GEISHA - A Chicken Embryo Gene Expression Database
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SPDEF
SAM pointed domain containing ETS transcription factor

Gene
Official SymbolSPDEF
Official Full NameSAM pointed domain containing ETS transcription factor
CGNC ID2014
also known asSAM pointed domain-containing Ets transcription factor
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_425831
PolypeptideXP_425831
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human25803ENSG00000124664MIM:608144
Mouse30051ENSMUSG00000024215All phenotypic alleles (5):Targeted, knock-out(3) Targeted, other(2) MGI:1353422
Xenopus779866491204
Zebrafish100003543ENSDARG00000029930ZDB-GENE-090529-1ZFIN:ZDB-GENE-090529-1
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene428271
Ensembl GeneENSGALG00000002792
KEGGgga:428271
GEISHA IdSPDEF.UApcrData SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
ATGGGCAGCCCCAGCCCCCCCGGCACCCCCTTCTGCCTGCACTACTTCGACATGCTCTACTCGGAGGACGTCGCATGGG
CTGCCAAAGGGATGGGGGAGACCTCCCAGAGCGGCACCCCGGGGGGGCGAGGGGAGGTGAAGAAGGAGCCGGAGCAGTG
CCCCATCATCGACAGCCAAGGTTTGGGGCTGGGGGGCGATGGGGAGCTGCAGGGGGGGCTGCCCTTGGAGGAGCACTCG
CTGGAGCAGATGCAGAGCATGGTGGTGGGCGAAGTGCTGAAGGACATCGAGACGGCGTGCAAGCTGCTCAACATCGCCG
CAGACCCAGCAGATTGGAGCCCCGGCAACGTGCAGAAGTGGATCCTATGGACGGAGCATCAGTACCGGCTGCCGCAGCT
CGGGAAGTCCTTCCAGGAGCTGTCGGGGAAGGAGCTGTGCGCGATGTCGGAGGAGCAGTTCTGCCAACGCTCGCCCCTC
TGCGGGGATGTCCTCCACGCACACCTCGACATCTGGAAGTCGGCTGCGTGGATGAAGGAAAAAGCTGCCCCAGGGGACG
TGAGATACTGCGGGGGTGACAGCGGATGGGCGGACAGCGAGGTGGACTCGTCCTGCGCCGGGCAACCCATCCACCTCTG
GCAGTTTCTGAAGGAGCTGCTGCTGAAACCCCACAACTACGGGCGCTTCATCCGTTGGCTCAACAAGGAGAAAGGGATC
TTCAAGATCGAGGACTCGGCGCAGGTGGCGCGTCTATGGGGCATCCGCAAGAACCGCCCGGCCATGAACTACGACAAAC
TGAGCCGCTCCATCCGGCAGTACTACAAAAAGGGCATCATCCGGAAACCCGACATCTCGCAGCGCCTCGTCTACCAGTT
TGTGCACCCGCTCTGA
CommentsProbe designed by Dr. Matt Salanga, University of Arizona. Insufficient information provided to verify exact sequence used to synthesize probe. Sequence above was obtained from NCBI (XM_425831.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Area Pellucida
Headfold
Hensen's Node
Neural Plate/Tube
Notochord
Primitive Streak
 
7-12
stage 7
stage 7
stage 8
stage 8
stage 10
Anterior Intestinal Portal
Anterior Neuropore
Head Mesenchyme
Headfold
Neural Plate/Tube
Notochord
Dorsal view.
Ventral view.
13-18
stage 13
stage 18
Anterior Intestinal Portal
Foregut
Head Mesenchyme
Lateral Plate Mesoderm
Midgut
Neural Plate/Tube
Paraxial Mesoderm
Pineal Gland
 
19-24
stage 20
stage 20
stage 21
stage 21
Allantois
Foregut
Midbrain
Midgut
Pineal Gland
 
25
stage 25
Allantois
Foregut
Midgut
Pineal Gland
 

Mouse

EmageMGI:1353422
EurexpressMGI:1353422
MGI GXDMGI:1353422

Frog

Xenbase491204

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-090529-1
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