GEISHA - A Chicken Embryo Gene Expression Database
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ZEB1
zinc finger E-box binding homeobox 1

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolZEB1
Official Full Namezinc finger E-box binding homeobox 1
CGNC ID5487
also known asTCF8, zinc finger E-box-binding homeobox 1|TCF-8|delta EF1|delta-crystallin enhancer-binding factor|deltaEF1|transcription factor 8 (represses interleukin 2 expression), Zinc finger E-box-binding homeobox 1 , Transcription factor 8, Delta- crystallin enhancer-binding factor (Delta EF1). , Zfhx1a
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205131
PolypeptideNP_990462
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3548
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6935ENSG00000148516MIM:613270MIM:189909
Mouse21417ENSMUSG00000024238All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:1344313
Xenopus548525, 444391484654
Zebrafish114425, 100004929ENSDARG00000013207, ENSDARG00000016788ZDB-GENE-010621-1, ZDB-GENE-070912-124ZFIN:ZDB-GENE-010621-1, ZFIN:ZDB-GENE-070912-124
Gene Ontology
Molecular FunctionE-box binding, metal ion binding, sequence-specific DNA binding, more...sequence-specific DNA binding transcription factor activity
Biological Processnegative regulation of transcription, DNA-templated, positive regulation of neuron differentiation, more...transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene396029
Ensembl GeneENSGALG00000007260
KEGGgga:396029

Entry 1

GEISHA IdChEST935j15Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
TCAGATAACGTAGCTGGGTCCATGCTATCTTTATAAGAGTCTCTAAACACAGCAGTGGGAAGGCAAGTAGTAAAGAGGC
GAGTAGAAAGCTGGAAAAAAGAGCAGGAAGAAAAGTAGATGAAACAAAGTGGATTTTTCCAATTGATATACGTGTAGTC
AGCAAGTTTGGTACATAAGGCACCTGTCCCAGGCAAGATTTTGGAATGATTTGCCTTTTACCTTTGACATGATACAAGG
GCTTGTGCATGAAAGCGAACGTGAAAGCTCATTGATCTTAAATTTCCATCAGGATAGAAGAGCTGAAATGGTTTTGAGT
TTCAATAATTTTTATTGCAAGAAAAATGCCTCTTTTTCTAATCTATTTATATTCACACTTGTTTTGTACTCTGAGTTGC
ATCTGAGAATCTGTTTATCTTTTGATGTTCATTTTTCCTAAGAAGGTTACAAATACCTTTGTAGTTTAGCACCGTGCCC
TTGTATCCCTATGCAAGAAACCCAGGCTGACAATGCTGAGAGCAAACTGTTAAATACAATTACTTGTTGTTGGCAATAC
ATTCACCAACAGCATATTATAATGAAAGCAGCAGCACAGAGTTTAAAATATTACGTTTAAGGAATCCTTTTTTTGTTTG
TTTGTTTGTTTTTGTGCTTTATTTTCTAGGTAAAAGACCTCATGAGTGTGGAATCTGTAAAAAAGCCTTCAAACACAAA
CACCATTTGATCGAACACATGCGACTGCATTCTGGGGAGAAACCCTACCAATGTGACAAATGCGGGAAGCGCTTCTCAC
ACTCGGGGTCGTACTCTCAGCACATGAATCATCGCTACTCCTATTGCAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
Widespread Expression
 
19-20
stage 20
stage 20
Somites
Widespread Expression
 

Entry 2

GEISHA IdZEB1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGAGGAGGAGGAAGAAAAGGACG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGTGGCACTTACAGCACACAGGTCcDNA Template Length1082
Forward cDNA Template Probeshow
CCCCATCATCCCACCACACAGACAGGGCTTGATAGGCCAAGGAAGAAAAAGCCTCATATCATATCCCTCAAATTGGTAC
TACCTACCTCAAAACACAAATACCCACCACGGAATTTTGACGAACTTTGCCTGTCCTTACCGGGAATTAAACACGTGTA
AAGTCCCCGGCAAACAGAAACTCAACAACCAACCTTTTCAACCACCTTTTTAACCCCCTGGATAAAAAAACTTCGTTTC
TCCAACCACCGGCTTCCTAAGGGCAAAAAAAACCCTTAAAAGGAAAAAAGGGCTCAACAACAAAACCCAAGGTAAAAAC
CCCCACCTTTCAGGTTGAATTTACAAAGGTACCCCAACCCTGTTAAAGGTTTCGGCCAAAGGGAATTCCGTATGGCAAA
ATTTCCCCCTTTTAAAAAACCTAAAAAAACGGGGACCCGATTTAAGAAATGTTTTTCCCCTTAAAAAACAAAAAACCAA
AAAAACCCCCCCCAATTGGGCCCGGCTAAAAAAAATTTATTGACCCCCTAAACAGGAAAATTTTAAATGCGGGAAAAAA
AAAAAAAAGGGGCCCCAAGGATGTTGTTTATAAAAAAAAAAAGGGGTTTCCCCCCAACCACCGGTGATAAAACCCCTTT
TTTTCTCCCCAAAAAAACACCCCGGGGGTTTTTTTCACAAAAACCCCCGGCCCCGCGGGGGGAAAAAAAAACGTTGTTT
CCCCACAAAATTTTTAAGAAAAACGGGGGGGGAAAAAAAATA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Unlabeled
Stages 3 & 4.
4-6
stage 4
stage 5
stage 5
Early Mesoderm
Epiblast
Neural Plate/Tube
Primitive Streak
 
7-12
stage 8
stage 8
Area Opaca
Lateral Plate Mesoderm
Neural Plate/Tube
extremely faint staining
very faint staining
13-18
stage 14
stage 16
Forebrain
Hindbrain
Midbrain
trapping
19-21
stage 20
stage 21
  

Entry 3

GEISHA IdZfhx1a.Tylzanowski.2003Data SourcePublication
Complete cDNA Template Probeshow
GCGAGAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGGAAGCAGGCGAACCCGAGGCGCAACAACGTCACCAATTA
CAATAACGTGATAGAAGCAAACTCAGATTCAGATGACGAAGATAAATTGCATATAGTGGAAGAAGAAAGTATAACTGAT
GCAGCAGACTGCGATGCAAGTGTGCCAGAAGATGACTTGCCAACAGACCACACCGTGTTACCAGAAAACAGTGAGAGGG
AAGGGAGCACAAACAGCTGCTGGGAAGATGAAGGAAAAGAAACAAAGGAAATCCTGGGGCCTGAAGCTCAGTCAGATGA
AGTTGGATGTACAGTAAAAGAAGATGAATGTGATTCTGATGCAGAAAATGAACAGAACCATGACCCTAATGTTGAAGAA
TTCCTTCAACAAGAAGATACAGCTGTTATTTACCCTGAAGCACCTGAGGAGGACCAGAGACAAGGCACACCAGAAGCTA
GTGGTCAGGATGAAAATGGAACGCCCGATGCATTTTCCCAGCTGCTCACCTGCCCGTACTGTGACAGAGGGTACAAACG
CTTCACCTCTCTGAAGGAACACATTAAATACCGCCATGAAAAGAACGAGGATAACTTCAGTTGCTCCCTCTGCAGTTAC
ACGTTTGCGTATAGAACACAGCTGGACCGCCACATGACGTCGCACAAGTCAGGACGAGATCAGAGACATGTGACGCAGT
CCAGTGGTAATCGAAAATTCAAGTGCACTGAATGTGGAAAAGCTTTTAAATATAAACATCATCTAAAGGAACACCTACG
AATTCACAGTGGAGAGAAGCCATATGAGTGCCCAAACTGCAAGAAACGTTTTTCCCATTCTGGTTCATACAGCTCACAC
ATAAGCAGTAAGAAGTGTATTGGTTTGATGCCCGTAAAGGGTCGAGCTCGGTCAGGGCTCAAGACGTCTCAGTGCTCCT
CCCCTTCCCTTTCTGCATCGCCCGGTAGCCCAGCAAGACCACAGATACGACAAAAGATAGAAAATAAACCCTTGCAAGA
GCAACTTCCTGTTAACCAAATTAAAACTGAACCTGTGGATTATGAATTCAAGCCCATAGTGGTTGCTTCAGGAATTAAT
TGTTCGACCCCTTTGCAGAATGGGGTTTTTAGTGGTGGTAGCCCGTTGCAGGCAACCAGTTCTCCTCAGGGTGTGGTGC
AAGCTGTTGTTCTGCCAACAGTGGGTCTGGTGTCTCCCATAAGCATCAACTTAAGTGACATTCAAAATGTACTTAAAGT
GGCAGTGGATGGTAATGTAATAAGGCAAGTATTGGAAAACAATCACGCTAATCTTGCATCCAAAGAACAAGAAACAATC
AGCAATGCATCTATACAACAAGCTGGCCATTCCCTCATTTCAGCTATCAGTCTTCCTTTGGTTGACCAAGATGGGACAA
CCAAAATTATCATCAACTACAGCTTGGAGCAGCCAAGTCAACTTCAGGTTGTTCCCCAAAATCTAAAAAAAGAACATTC
TGTTCCTACAAACAGTTGCAAAAATGAAAAGTTACCAGAAGATCTTACGGTGAAGTCTGAGAAAGATAAAAACTTTGAA
GGAGAGACCAACGATAGCACTTGTCTTCTTTGTGATGACTGTCCAGGAGATCTTAATGCACTTCAAGAATTAAAGCACT
ATGAAACAAAAAATCCTCCTCAGCTTCCCCAGTCCAGTGGAACAGAAGCTGAGAAGCCCAGCTCCCCTGCCCCATCAGA
AACTGGGGAGAACAACTTATCTCCTGGTCAGCCACCCTTAAAGAACCTTTTATCGCTCCTAAAAGCATATTATGCATTA
AATGCACAACCAAGCGCAGAAGAGCTTTCAAAAATCGCCGATTCCGTGAACCTACCACTGGATGTGGTAAAAAAGTGGT
TTGAAAAAATGCAAGCTGGACAAATTTCTGTGCAGTCTTCTGGACCATCTTCTCCTGAACAAGTTAAAATAAGCAGTCC
CACAGATAACGATGATCAAGCAGCAACTACAAATGAGAGTGAACCCCAGAACAGCACAAACAACTCACAAAATCCGGCC
AATACAAGTAAATCTCAGACTTCATCAGGGGGATCAACTCAGAATGGTTCGCGCAGTAGCACGCCATCCCCATCACCAC
TAAACCTTTCTTCATCAAGAAATTCACAGGGTTATACGTACACAGCAGAGGGTGTACAAGAAGAGCCACAAATGGAACC
TCTTGACCTTTCACTACCAAAGCAACATGGAGAACTGTTGGAAAGATCTACCATAACTAGTGTTTACCAGAACAGTGTT
TATTCTGTCCAGGAAGAACCTTTGAACTTAACTTGTGCAAAAAAAGAACCACAAAAGGACAACAGTATTACAGACTCTG
ATCCTATTGTAAATGTAATCCCACCAAGTGCCAATCCCATAAATATTGCTATACCTACAGTCACTGCCCAGTTACCTAC
AATTGTTGCCATTGCTGACCAGAACAGTGTTCCATGCTTGAGAGCTCTTGCTGCCAATAAGCAAACCATTTTGATTCCC
CAGGTGGCTTATACGTACTCTACTACAGTTAGTCCTGCAGTTCAGGAAACACCACCAAAACAGACCCAAGCCAACGGAA
GTCAGGACGAAAGGCAGGACACTAGCTCAGAAGGAGTATCGAATGTAGAAGATCAAAATGATTCTGATTCAACACCCCC
AAAGAAAAAGATGAGAAAGACAGAAAATGGGATGTATGCATGTGATTTGTGTGACAAAATATTCCAGAAGAGCAGCTCA
TTATTGAGACATAAGTATGAACACACAGGTAAAAGACCTCATGAGTGTGGAATCTGTAAAAAAGCCTTCAAACACAAAC
ACCATTTGATCGAACACATGCGACTGCATTCTGGGGAGAAACCCTACCAATGTGACAAATGCGGGAAGCGCTTCTCACA
CTCGGGGTCGTACTCTCAGCACATGAATCATCGCTACTCCTATTGCAAAAGAGAGGCAGAGGAGCGTGACAGCACAGAG
CAGGAGGAGGTGGGACAGGAGGTGCTCAGCAGCGAGCATGCTGGTGCCAGAGCATCGCCATCGCAGATCGACTCCGATG
AGAGAGAGAGTCTAACCAGGGAAGAAGAGGAAGATAGTGAAAAAGAGGAAGAGGAGGAGGAAGAAAAGGACGTAGAAGG
ACTTCAGGAAGAAAAAGAATGTAGAAAACTACAAGATGTAGAGGAGGAAGAAGAAGTAGAAGAAGAAGAAGAAGAAGAG
GAAGGGAAAACTGAAGGTAACAAGAACGATGACGTTGTAAATCGAGCAAGCAATGCAGAACCAGAAGTTATACAGAGCA
ATGGGCAGGTGTCAGAAGAAAAAACAAATAAAGCTTAAATGATAGTTTTTTCTATATGGAAAAAAATAAATCAGTAATG
AAGATCGTTCTATATTATACATGCTTTTCATGGAAACACGGTAGCCTGCATACTGTGATTTCTGTTCACTACTGTGTAA
AAAAATATATATATAAAAAAAAAGAAAAAAGAAAAAAAAAAGAAATCCAGGTGTGCCTGAACCTCAAACTTAGTAATTT
TTCACACAGTTTTCAAAGTTAGGAACAAGTTTGTAACATGAAGCAGATTAGAAAAATACAGTGACTCTGGAAGCAAAGG
TTTAACAGGTTGTAGGAAACCTGATTTATTAGACAAGCATCTGGCATTGTTTGTTTTATCAGTATTAATTCTCATTCTT
ACGTTCATTAATTTTTAAGCTGTACAATTGGGAGAGATTTATATGATTTTTTTTTTTTTTATGGCAAAACATTTCCTAA
ATCCGCTTCAGTATTTTATTATGTTTTTAAAATGTGAGAACTTCTGCACTACAGAATTCCCTTCTGCAGAAACCTCTAA
CAGTGCTTGGCTACCTTTGTAAATTCAACCTAGAAGGTAGCGGTTATAACATTAGATGTTGTAGTAGAGCATATTATCA
TTTAAAGTGTATTGTTAGCCTTAAGAAAGCAGATGATAGAAGAACCGAAGTTTCTTACTCATGTGGTTAAAAATGTAGT
TGAAAAGATTGTTGTTGAGTTCTGATTGCAGGGACTAACAGTGTTAATACCGGTAAGGACAGCAAAGTCGTCAAAATCA
GTGTTTGTAATTGTGTTTTGAGTATGTAGTAACAATATGAAGGATATGATATGAAGCTTTGTATCTCCTTTGGCCTTAT
GCAAGACCTGTGTGCTGTAAGTGCCATTTATCAGTATTACAAAGGCTCTCACCGGCCTTTCTCCAATGCGTGGCCTACA
ATAACTAGCATTTGTTGATTTGTATCAAACTTCTAATCTAATCATGGGGGAAAAAACACTCAGCCATCAGAGAAGTAAG
AACACTGGTATCTTTCATTATTTAATTATTTGGTGGTATTTTTGGTTAATACCTGACTTGCAGAATTTCTCTACGATAA
TTACAAGGGAAATTTTCTAATCTGCTTTATTGCTTTATCAGTTTACTTTAATTTCAGACACATACATGACATGTTATCT
GGCTCATAAGTATTTTCAAATGTTAGTTATTATGGACCCCATTTATTAACAATGTTAGCTGATTTTTACCTATCAGTAT
TATTTTATTTCTTTTAGTTTATAGATCTGTGCAACATTTTGTACTGTATGTCTCCAAACCTGGCAGTATTAATACCCTT
CTTACTGACATATGTACCTTTTTAGTTTTAGAAAACTTTTATATTTATGTGTCTTATTTTTATATTTCTTTATTTATTA
CACAGTGTAGTGTATAATACTGTAGTTTGTATTAATACAATAATATATTTTAGTATGAAAATTTGGAAAGTTGATAAGA
TTTAAAGTAGAGATGCAATCGGTTCTCTTGCATTGAGATTTGATTTAACAGTGTTATGTTAACATTTATACTTGCCTTG
GACTGTAGAACAGATGAATTAAAATGGGAATGTATTAATTTTACAATTGCAATCAATTCATTTTACCTTTACCCAGTTT
TTAATATAAAGCTCTTAAATTTTGAAATTCACTGTGTGACTAATAGCATGATGCTCTGCAGTTTTATTAAGAGATTAGC
CTAACCATAAAACTCTCATTTCCTTAGTAAGCCAAATTAGAGTAATCTTATAAACAGTGTTGGGAACAACGTTTAACTT
TTTTGTGCCAATTTGTTCCTGTATTCATGTATGTATGTTACAAATCTGAAACTTCATTTTTAAGTTCCTTGTTACATCA
TGGTCATTTTCTAGTTTTTTACCAGACTCCCCATCTCACAATAAAATACGTCAACAA
CitationTylzanowski P, De Valck D, Maes V, Peeters J, Luyten FP. Zfhx1a and Zfhx1b mRNAs have non-overlapping expression domains during chick and mouse midgestation limb development. Gene Expr Patterns. 2003 Mar;3(1):39-42. Erratum in: Gene Expr Patterns. 2003 Jun;3(3):383.
CopyrightCopyright © 2003 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205131).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 30
Leg Mesenchyme
 
31-34
stage 32
stage 32
stage 32
stage 32
stage 32
stage 34
Leg Mesenchyme
green=Zfhx1b
green=collagen II
red=Zfhx1a
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3548

Mouse

EmageMGI:1344313
EurexpressMGI:1344313
MGI GXDMGI:1344313

Frog

Xenbase484654

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-010621-1, ZDB-GENE-070912-124
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