GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

TNNC1
troponin C1, slow skeletal and cardiac type

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolTNNC1
Official Full Nametroponin C1, slow skeletal and cardiac type
CGNC ID49617
also known asPCTNC1, troponin C, slow skeletal and cardiac muscles|TN-C|cardiac troponin C|troponin C type 1 (slow)
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205133
PolypeptideNP_990464
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3041
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human7134ENSG00000114854MIM:192600MIM:191040
Mouse21924ENSMUSG00000091898All phenotypic alleles (2):Targeted, other(2) MGI:98779
Xenopus447990, 379410480514
Zebrafish353247, 415175ENSDARG00000011400ZDB-GENE-030523-1, ZDB-GENE-040625-62ZFIN:ZDB-GENE-030523-1, ZFIN:ZDB-GENE-040625-62
Gene Ontology
Molecular Functionactin filament binding, calcium-dependent protein binding, calcium ion binding, more...protein homodimerization activity, troponin I binding, troponin T binding
Biological Processcardiac muscle contraction, regulation of ATPase activity, regulation of muscle filament sliding speed, more...ventricular cardiac muscle tissue morphogenesis
Cellular Componenttroponin complex
Links to other databases
Entrez Gene396032
Ensembl GeneENSGALG00000001459
KEGGgga:396032

Entry 1

GEISHA IdTNNC1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTTATAAAAGCTTGCGGCCGCAGAATATATAAGGCGGCGGTTGAGCAG
Reverse cDNA Template PrimerGCTCTAGAAATTAACCCTCACTAAAGGGCAGAAGGGGTTTCAGAGATTCGcDNA Template Length580
Complete cDNA Template Probeshow
TTTTATAAAAAGCTTGCGGCCGCAGAATATATAAGGCGGCGGTGAGCATTGACAGAACAAAAAAATGAGTTTAAGGCTG
CCTTCGACATCTTCGTGCTGGGGGCAGAGGATGGCTGCATCAGCACCAAGGAGCTGGGGAAGGTGATGAGGATGCTGGG
GCAGAACCCCACCCCTGAGGAGCTGCAGGAGATGATTGATGAGGTGGATGAGGATGGCAGTGGCACTGTGGACTTTGAT
GAGTTCCTTGTTATGATGGTTCGGTGTATGAAAGATGACAGCAAAGGAAAAACTGAAGAGGAGCTCTCAGATCTCTTCA
GGATGTTTGATAAGAATGCTGATGGCTACATCGATCTTGAGGAACTGAAGATCATGCTACAGGCAACTGGAGAGACGAT
CACTGAGGATGACATAGAAGAACTGATGAAAGATGGGGACAAAAACAATGATGGCAGGATTGATCTATGAGCGAGTTCC
TGGAGTTCATGAAGGGAGTTGAATAAATCTGAAGCCAGATGGACAGCCCGAATCTCTGAAACCCCTTCTGCCCTTTAGT
GAGGGTTAATTTTCTAGAGCAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Area Pellucida
Low level expression.
4-6
stage 4
stage 6
Area Pellucida
Cardiovascular
Headfold
Neural Plate/Tube
Low level expression.
7-12
stage 7
stage 8
stage 9
Anterior Intestinal Portal
Area Pellucida
Head Process
Headfold
Heart Tube
Lateral Plate Mesoderm
Mesoderm
Neural Plate/Tube
Notochord
 
13-18
stage 13
stage 14
stage 15
stage 18
Heart
Lateral Plate Mesoderm
Myotome
Notochord
Somites
Sections pending.
sections pending.
19-24
stage 21
stage 23
stage 24
Allantois
Heart
Myotome
Somites
Sections pending.

Entry 2

GEISHA IdTNNIC1.Anderson.2020Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
TGACGCCCCCCGGCCCTTCGCCCTCCCTGCCCGGCCATGGATGACATCTATAAGGCGGCGGTTGAGCAGTTGACAGAAG
AACAAAAAAATGAGTTTAAGGCTGCCTTCGACATCTTCGTGCTGGGGGCAGAGGATGGCTGCATCAGCACCAAGGAGCT
GGGGAAGGTGATGAGGATGCTGGGGCAGAACCCCACCCCTGAGGAGCTGCAGGAGATGATTGATGAGGTGGATGAGGAT
GGCAGTGGCACTGTGGACTTTGATGAGTTCCTTGTTATGATGGTTCGGTGTATGAAAGATGACAGCAAAGGAAAAACTG
AAGAGGAGCTCTCAGATCTCTTCAGGATGTTTGATAAGAATGCTGATGGCTACATCGATCTTGAGGAACTGAAGATCAT
GCTACAGGCAACTGGAGAGACGATCACTGAGGATGACATAGAAGAACTGATGAAAGATGGGGACAAAAACAATGATGGC
AGGATTGACTATGACGAGTTCCTGGAGTTCATGAAGGGAGTTGAATAAATCTGAAGCCAGATGGACAGCCCGAATCTCT
GAAACCCCTTCTGCTCTGTGACTCAGCTCCTTGGTCCCATCCCCTGGCTGCCAGCATGAAGACTGAGCGCTGAGAAGGG
TGGCCATAGGGAACATAAAGCGCGTTGCTATCAAAAA
CommentsImages and probe sequence provided by Claire Anderson.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Unlabeled
section 3+
4-6
stage 4
stage 5
stage 6
Area Opaca
Early Mesoderm
Epiblast
Headfold
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
stage 5-
7-12
stage 8
stage 10
stage 10
stage 12
stage 12
stage 12
Atria
Heart Tube
Lateral Plate Mesoderm
Myocardium
Neural Plate/Tube
Notochord
Outflow Tract
Primitive Streak
Sinus Venosus
Somites
Ventricles
extraembryonic endoderm
section 50
stage 10+
stage 12+
stage 8+
13-15
stage 14
stage 15
Atria
Myocardium
Myotome
Notochord
Outflow Tract
Ventricles
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3041

Mouse

EmageMGI:98779
EurexpressMGI:98779
MGI GXDMGI:98779

Frog

Xenbase480514

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030523-1, ZDB-GENE-040625-62
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona