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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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AHR
aryl hydrocarbon receptor

Gene

Official Symbol	AHR
Official Full Name	aryl hydrocarbon receptor
CGNC ID	8232
also known as	aryl hydrocarbon receptor
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204118
Polypeptide	NP_989449
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3264

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	196	ENSG00000106546		MIM:600253
Mouse	11622	ENSMUSG00000019256	All phenotypic alleles (14):Other(4) Targeted, knock-out(2) Targeted, other(8)	MGI:105043
Xenopus	613065, 398659			983106
Zebrafish	554265, 246224	ENSDARG00000023537, ENSDARG00000020046	ZDB-GENE-050922-1, ZDB-GENE-020531-2	ZFIN:ZDB-GENE-050922-1, ZFIN:ZDB-GENE-020531-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	373907
Ensembl Gene
KEGG	gga:373907

Entry 1

GEISHA Id	ChEST258o19	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show `NNTGGGCGATTGGAGCTCCACCGCGGTGGCGGCCGCGGGCTAGCACCACCTTATGCATGTAGGCAAGAATTTGTTCCTT ACAAGCAACCCACAGCAATGATGCCTCAGCTTTCTAACTTTTCCCAAATGGATTTCCCTGTAGCAGGTCTTGACAGATC AGCCTATTCTGCTTCTTCCAACTTGGAGGATTTTCTCGGTTGTTTGCAGCAGGTCCCTGAAAACCTTGACTGTGGGATA AATTCTGAGTCGGTTATGTTAACCCCCCAAACATGTTATGCAGGTGCCGTTTCTATGTACCAGTGCACACAAGAAGCA`
Comments	AHR : No specific expression detected for stages 3-12.

no images

Entry 2

GEISHA Id	AHR.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AAGACGGGTGAGAGTGGAATGAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGACGGGTTGAAGATGTGTGGCAG	cDNA Template Length
Forward cDNA Template Probe	show ATACTTATCACATCTAACTGAGAGGGATATGCTTCATTTACATTTCCTCCATTGAAGCCATTTTGGAACTTGTTTAACA ATGTTTGCTGATTTGCCATCATGGGATCATATTGCATTTGATCCATGCAGTTTGGCTGTGCTTCTTGTGTGCACTGGTA CATAGAAACGGCACCTGCATAACATGTTAGGGGGGTTATCATATCCGACTCAGAATTTATCCCACAGTCTAGGTTTTCA GGGACAAGCTGCAAACAACCAATAAAATCCTCTAAGTTGGAAGAAGCAGAATAGGCTGATCTGTCAAGACCTGCTACAG GGAAATCCATTTGGGAAAAGTTAGAAAGCTGAGGCATCATTGCTGTGGGTTGCTTGTATGGAACAAATTCTTGCCTACA TGCATAAGGTGAAGCGTTTACTTCTGATTTGTAAGAAAACTCAGCAGCAGTGGCTTGCATGCCAGGGAACGTGTATTGC TGGGGCTGCTGCGGTGAGCAAAGAGGCATGCTGGTGCCAGAGCTCCAATTTGTGAACATCCCATTGACTTGCATATGTT TCATTTTCTGACAGAGCTGCTGCTGTTGCTGTTGCTGCTGCTCCATGAGCTGTTTCTGATGCTGATGAATTTGATGCTG ATCTAATTCTTGCTGTACCAAGCAACCGGCATTCTGGACCAGGGGCTGCTGCTGATTACAGCCCGAATATAAGAAGTCA GACTTATTTAAGGAATCCTGCACATAAGTCAAGATTTCATCAGTTATGTCGATGTCCCCAATATCATCCATACCAGATA ATTCAGTTTTAAAAACTCCTCATCCTGCTGAATACACTTTAAATCTTCAAAGTCAATACCCAGATTTTTCATGATGCTG TACAAATCATTTGTTTTGTTATCTTGAAAAACCCTGCATTTCCTCCAGAAATGGCCACTACTGTCCTGGGAAACCTCCA TAAATTCCGGCTTGAAATATTGGAACTTCCGCCGGTAGGAAGCATCTGTCCATTCACTGCCTAAAAACCCCCCANTTCA TCCTGCTGTCTGAAAAAATTCCCTCAAGAAAATTTTGTTAATCTGAAGAAAAAAAAAAAACACCTCTTCCTTAAATGGC CCAGGAGAATTGGACCCCAAACCCCAGAAGGGATTTTCCCCTTTCCCGGGGGTTTTCCCTGGCGAAAGACCCAAACCGG AACAAGAATTTACTTTAAAACCCCCCCGGGAAAAAGAAGAACCACGACCCCCCGAAATTCCCTCTTTCTGAAAGCTTTG GAAAAAAA
Comments	No specific expression detected stages 3-12.

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Allantois
Cranial Ganglia
Spinal Ganglia and Nerves

19-24

stage 20

stage 21

Allantois
Cranial Ganglia
Head Mesenchyme
Lung
Retina
Somites
Spinal Ganglia and Nerves

stage 25

Allantois
Cranial Ganglia
Head Mesenchyme
Leg Ectoderm
Lung
Retina
Spinal Ganglia and Nerves
Wing Ectoderm

Entry 3

GEISHA Id	AHR.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CCCAAATGGATTTCCCTGTAGCAGGTCTTGACAGATCAGCCTATTCTGCTTCTTCCAACTTGGAGGATTTTCTCGGTTG TTTGCAGCAGGTCCCTGAAAACCTTGACTGTGGGATAAATTCTGAGTCGGTTATGTTAACCCCCCAAACATGTTATGCA GGTGCCGTTTCTATGTACCAGTGCACACAAGAAGCACAGCCAAACTGCATGGATCAAATGCAATATGATCCCATGATGG CAAATCAGCAAACATTGTTAAACAAGTTCCAAAATGGCTTCAATGGAGGAAATGTAAATGAAGCATATCCCTCTCAGTT AGATGTGATAAGTAATTCACAGACTGCCACACATCTTCAACCCGTTCATCATCCAACAGAGCCCAGATCCTTCCCAGAT TTGGCATCTAGTGGATTTATGTAATTCAGATCTAGAGTTCCATCTATGATTTTTGTCTGGGTATCAGGCTGCTCTGAGG AAAAGCTTGATGAGTCTGTCTTTCAACATTGGACTTCAACAGCTAAATTAGATTTTGAAAAACTGAGGTTGATTGCACT AAGTACTGGTGGATGTGTAATCCAAGACCCTAACTTTTTAGTGTGGCAGGTGGATTTAAAACTCTTAACTTAAAAGTAT GCACATGCTGTTTTCCATCAGACTGACTGTGTCATTGTGGTATGGATTACATATGTACTAAAGACTATGTCATGCTATA CAACATAAGATAAGGCAAATGGTTTGTTATTTAGAAAAATTGATTGGGCACTTTACAAATAGCATCATTGGCACAAGGA AGGTAATTTCACACTTGGGATTATTTCCAGACTTTATGCAAAAAAGAATCGATATC
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.