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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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DACH1
dachshund family transcription factor 1

Gene

Official Symbol	DACH1
Official Full Name	dachshund family transcription factor 1
CGNC ID	12712
also known as	DACH, dachshund homolog 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001199446
Polypeptide	NP_001186375
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.79

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1602	ENSG00000276644		MIM:603803
Mouse	13134	ENSMUSG00000055639	All phenotypic alleles (2):Targeted, knock-out(2)	MGI:1277991
Xenopus	779442, 779068			980848
Zebrafish	791191	ENSDARG00000069440	ZDB-GENE-070427-2	ZFIN:ZDB-GENE-070427-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	373935
Ensembl Gene
KEGG	gga:373935

Entry 1

GEISHA Id	DACH1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-ACACGGTCTACACCAAGCTG-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGACACACTGCTGCTTCGATGA-3’	cDNA Template Length	714
Complete cDNA Template Probe	show ACACGGTCTACACCAAGCTGAAGCGCCTGGAGATCACGCCCGTGGTCTGCAACGTGGAGCAGGTCCGCATCCTGCGGGG GCTGGGGGCCATCCAGCCCGGCGTCAACCGCTGCAAACTCATCTCCCGGAAGGATTTCGAGACCCTCTACAACGACTGC ACCAACGCCAGTTCTAGACCTGGAAGGCCTCCTAAGAGGACTCAAAGTGTCACCTCTCCAGAGAATTCTCATATCATGC CACATTCTGTCCCAGGCCTAATGTCTCCTGGAATCATCCCGCCAACAGGCTTGACAGCAGCAGCTGCAGCAGCAGCAGC TGCCACCAATGCTGCCATAGCAGAAGCAATGAAAGTGAAAAAAATTAAATTGGAAGCTATGTCCAACTACCATGCAAAT AATAACCAGCATGGAGCAGACTCTGAAAATGGAGATCTGAATTCAAGTGTTGGATTGGAGCTTCCATTTATGATGATGC CCCACCCATTAATTCCTGTGAGCCTACCTCCAGCGTCTGTCACAATGGCAATGAGCCAGATGAATCACCTTAGTACCAT TGCCAACATGGCAGCAGCAGCACAAGTGCAGAGTCCTCCATCCAGAGTTGAGACATCTGTTATTAAGGAACGTGTTCCA GACAGCCCTTCTCCTGCTCCTTCTCTTGAAGAGGGCCGAAGACCTGGCAGCCACCCATCCTCTCATCGAAGCAGCAGTG TGT

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Unlabeled

7-12

stage 7

stage 10

stage 11

Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Crest
Neural Plate/Tube
Pharynx
Primitive Streak
Somites

13-18

stage 16

stage 18

Diencephalon
Ear/Otic Placode
Endoderm
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Midbrain
Nephric Ducts
Neural Plate/Tube
Oral Pharynx
Pharyngeal Arches and Clefts
Pharynx
Sclerotome
Somatic Mesoderm
Telencephalon
Ventricles
Wing Mesenchyme

infundibulum
nephrogenic mesenchyme

19-24

stage 22

stage 24

Cranial Ganglia
Ear/Otic Placode
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Mesencephalon
Mesonephros
Nasal Placode/Nerve
Neural Plate/Tube
Outflow Tract
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

stage 25

Central Nervous System
Cranial Ganglia
Ear/Otic Placode
Eye
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Mesonephros
Midbrain
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	DACH1.Litsiou.2005	Data Source	Publication
Complete cDNA Template Probe	show ATGGCCGTTCCGGCTGCGCTGATCCCTCCGGCCCCGCTGGTCCCCCCTCAGCCTCCGGTCTCAACTTCTGCCGCCTGCA CCACCACCACCACCACCTCCTCGGCGGCCGCCACCTCCTCTCCGGCTCCGGCCATCGCTCCCCCGCCGCCCGCCTCGGG GACAAACCTATTCCGCCCGGAGCCCATCGCAGCGCCGGCGGCGGCGGCGGCCACAGTCACCTCCACCGCCACCACCACC ACCACCGGAGGCAGCGGCGGAGGCGGCGGCAGCGGCGGCGGCGGCGGCAGCCCCAGCCTGGGCAGCGGCACCGGCGGCG GCACCTCCGGCACCTCCACGCCCAACGCCGGCGCGGCCGGCAGCCTGCCCGGCAAGCCCGTGTACTCGACCCCGTCCCC GGTGGAGAACACCCCCCAGAATAACGAGTGCAAGATGGTGGATCTGAGGGGGGCCAAAGTGGCCTCCTTCACCGTGGAG GGCTGCGAGCTCATCTGCCTGCCCCAGGCGTTCGACCTCTTCCTGAAGCACTTGGTGGGGGGCTTGCACACGGTCTACA CCAAGCTGAAGCGCCTGGAGATCACGCCCGTGGTCTGCAACGTGGAGCAGGTCCGCATCCTGCGGGGGCTGGGGGCCAT CCAGCCCGGCGTCAACCGCTGCAAACTCATCTCCCGGAAGGATTTCGAGACCCTCTACAACGACTGCACCAACGCCAGT TCTAGACCTGGAAGGCCTCCTAAGAGGACTCAAAGTGTCACCTCTCCAGAGAATTCTCATATCATGCCACATTCTGTCC CAGGCCTAATGTCTCCTGGAATCATCCCGCCAACAGGCTTGACAGCAGCAGCTGCAGCAGCAGCAGCTGCCACCAATGC TGCCATAGCAGAAGCAATGAAAGTGAAAAAAATTAAATTGGAAGCTATGTCCAACTACCATGCAAATAATAACCAGCAT GGAGCAGACTCTGAAAATGGAGATCTGAATTCAAGTGTTGGATTGGAGCTTCCATTTATGATGATGCCCCACCCATTAA TTCCTGTGAGCCTACCTCCAGCGTCTGTCACAATGGCAATGAGCCAGATGAATCACCTTAGTACCATTGCCAACATGGC AGCAGCAGCACAAGTGCAGAGTCCTCCATCCAGAGTTGAGACATCTGTTATTAAGGAACGTGTTCCAGACAGCCCTTCT CCTGCTCCTTCTCTTGAAGAGGGCCGAAGACCTGGCAGCCACCCATCCTCTCATCGAAGCAGCAGTGTGTCCAGCTCTC CTGCACGGACTGAGAGCTCTTCAGACAGAATCCCTGTCCATCAGAATGGGCTATCTATGAACCAAATGCTGATGGGTTT GTCACCTAATGTCCTTCCTGGGCCTAAAGAAGGTGATCTGGCTGGTCATGACATGGGACATGAGTCAAAAAGAATACAC ATTGAGAAAGATGAGACCCCGCTCTCCACACCAACCGCAAGAGACAGCCTTGACAAACTTTCTCTAACTGGGCATGGGC AACCACTACCTCCAGGTTTTCCATCTCCTTTTCTATTCCCTGATGGATTGTCCTCCATAGAGACCCTTCTGACTAACAT CCAGGGTCTACTAAAGGTTGCTATAGACAATGCTAGAGCTCAAGAGAAACAAGTCCAACTGGAAAAGACAGAGCTGAAG ATGGAGCTCTTCAGGGAACGAGAACTGAGGGAAACACTTGAAAAACAGTTGGCCGTGGAGCAGAAAAATAGAGCAATAA TTCAGAAAAGGTTAAAGAAGGAAAAGAAGGCAAAGAGGAAATTGCAGGAAGCACTTGAATTCGAGACTAAACGACGGGA GCAAGCAGAACAGACACTGAAACAAGCAGCTTCAACAGATAGTCTCAGGGTCCTAAATGACTCTCTGACCCCAGAGATA GAAGCTGACCGCAGTGGGGGCAGAACAGATGCTGAAAGGACAATACAAGATGGAAGACTTTATTTGAAAACTACTGTCA TGTATTGAATTTTTCCTGCTGAAGATACCTGTGCTACGGTAAAGAACTTTGCAGTAAGACATTCACCCAAATGGAGTTC TGTGGGAACAAAATGTTTTCAACTTCATTTACCAATGTTCTTCAAAAATGTAAGGAATTCTGCAAGAGTGTCCTCCTTT GGTTATCTCCTGTGGCTCAAGCCAGAGCTCTAGAGAATGTTTGTAAATGTACAGTAGCACTCTTCTTACAGTGAAAATC TTCATCTGTGCACCGGACTATTGTACCAAAACTACAGGCAGGTCAGAACAAGGTTGAGTATTCCCTTTTTCAAGGAATG CAGACTCTGTCCTCCTCTGATGATTCTATATTTGAGCACATCAAATGATCCTTCCAGCGGTGTCGAAGTACACTTACAG ACTGTTATATCATACCGAAACCAGCAAGACAGCTCAGAAATGAACTTGTAGAGGGCATAAGAGGACTCTTATTTAAAAA AAAAAAAGAAAAAAAGAAAAAAAGTAAAAA
Citation	Litsiou A, Hanson S, Streit A. A balance of FGF, BMP and WNT signalling positions the future placode territory in the head. Development. 2005 Sep;132(18):4051-62. Epub 2005 Aug 10
Copyright	Authors hold the copyright. Published by the Company of Biologists Ltd.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001199446.1

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Ectoderm
Neural Crest

7-8

stage 8

Ectoderm
Neural Crest

Entry 3

GEISHA Id	DACH1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGGACACTTTGTGCGTTCGGCGCTCACTCCGTCCCTGCTCTGCTCTCCCGCTGCCGCAGCACCTGAGCGGGGCTGTCCC CCTTCTCTTCCCCCTCCTCCTCCCTTCTCCTCTCCTTTTTTTTTTTTTTTTTTTTTTTAATAGATATATATTTTTTTTT AATTTTCCCCCTTCTCCTGCGCGCGTGTGTGGGAACTTTCCCCCTCCCTGCCCCCCCCCGCCGTATATGTGACCATGGC CGTTCCGGCTGCGCTGATCCCTCCGGCCCCGCTGGTCCCCCCTCAGCCTCCGGTCTCAACTTCTGCCGCCTGCACCACC ACCACCACCACCTCCTCGGCGGCCGCCACCTCCTCTCCGGCTCCGGCCATCGCTCCCCCGCCGCCCGCCTCGGGGACAA ACCTATTCCGCCCGGAGCCCATCGCAGCGCCGGCGGCGGCGGCGGCCACAGTCACCTCCACCGCCACCACCACCACCAC CGGAGGCAGCGGCGGAGGCGGCGGCAGCGGCGGCGGCGGCGGCAGCCCCAGCCTGGGCAGCGGCACCGGCGGCGGCACC TCCGGCACCTCCACGCCCAACGCCGGCGCGGCCGGCAGCCTGCCCGGCAAGCCCGTGTACTCGACCCCGTCCCCGGTGG AGAACACCCCCCAGAATAACGAGTGCAAGATGGTGGATCTGAGGGGGGCCAAAGTGGCCTCCTTCACCGTGGAGGGCTG CGAGCTCATCTGCCTGCCCCAGGCGTTCGACCTCTTCCTGAAGCACTTGGTGGGGGGCTTGCACACGGTCTACACCAAG CTGAAGCGCCTGGAGATCACGCCCGTGGTCTGCAACGTGGAGCAGGTCCGCATCCTGCGGGGGCTGGGGGCCATCCAGC CCGGCGTCAACCGCTGCAAACTCATCTCCCGGAAGGATTTCGAGACCCTCTACAACGACTGCACCAACGCCAGTTCTAG ACCTGGAAGGCCTCCTAAGAGGACTCAAAGTGTCACCTCTCCAGAGAATTCTCATATCATGCCACATTCTGTCCCAGGC CTAATGTCTCCTGGAATCATCCCGCCAACAGGCTTGACAGCAGCAGCTGCAGCAGCAGCAGCTGCCACCAATGCTGCCA TAGCAGAAGCAATGAAAGTGAAAAAAATTAAATTGGAAGCTATGTCCAACTACCATGCAAATAATAACCAGCATGGAGC AGACTCTGAAAATGGAGATCTGAATTCAAGTGTTGGATTGGAGCTTCCATTTATGATGATGCCCCACCCATTAATTCCT GTGAGCCTACCTCCAGCGTCTGTCACAATGGCAATGAGCCAGATGAATCACCTTAGTACCATTGCCAACATGGCAGCAG CAGCACAAGTGCAGAGTCCTCCATCCAGAGTTGAGACATCTGTTATTAAGGAACGTGTTCCAGACAGCCCTTCTCCTGC TCCTTCTCTTGAAGAGGGCCGAAGACCTGGCAGCCACCCATCCTCTCATCGAAGCAGCAGTGTGTCCAGCTCTCCTGCA CGGACTGAGAGCTCTTCAGACAGAATCCCTGTCCATCAGAATGGGCTATCTATGAACCAAATGCTGATGGGTTTGTCAC CTAATGTCCTTCCTGGGCCTAAAGAAGGTGATCTGGCTGGTCATGACATGGGACATGAGTCAAAAAGAATACACATTGA GAAAGATGAGACCCCGCTCTCCACACCAACCGCAAGAGACAGCCTTGACAAACTTTCTCTAACTGGGCATGGGCAACCA CTACCTCCAGGTTTTCCATCTCCTTTTCTATTCCCTGATGGATTGTCCTCCATAGAGACCCTTCTGACTAACATCCAGG GTCTACTAAAGGTTGCTATAGACAATGCTAGAGCTCAAGAGAAACAAGTCCAACTGGAAAAGACAGAGCTGAAGATGGA GCTCTTCAGGGAACGAGAACTGAGGGAAACACTTGAAAAACAGTTGGCCGTGGAGCAGAAAAATAGAGCAATAATTCAG AAAAGGTTAAAGAAGGAAAAGAAGGCAAAGAGGAAATTGCAGGAAGCACTTGAATTCGAGACTAAACGACGGGAGCAAG CAGAACAGACACTGAAACAAGCAGCTTCAACAGATAGTCTCAGGGTCCTAAATGACTCTCTGACCCCAGAGATAGAAGC TGACCGCAGTGGGGGCAGAACAGATGCTGAAAGGACAATACAAGATGGAAGACTTTATTTGAAAACTACTGTCATGTAT TGAATTTTTCCTGCTGAAGATACCTGTGCTACGGTAAAGAACTTTGCAGTAAGACATTCACCCAAATGGAGTTCTGTGG GAACAAAATGTTTTCAACTTCATTTACCAATGTTCTTCAAAAATGTAAGGAATTCTGCAAGAGTGTCCTCCTTTGGTTA TCTCCTGTGGCTCAAGCCAGAGCTCTAGAGAATGTTTGTAAATGTACAGTAGCACTCTTCTTACAGTGAAAATCTTCAT CTGTGCACCGGACTATTGTACCAAAACTACAGGCAGGTCAGAACAAGGTTGAGTATTCCCTTTTTCAAGGAATGCAGAC TCTGTCCTCCTCTGATGATTCTATATTTGAGCACATCAAATGATCCTTCCAGCGGTGTCGAAGTACACTTACAGACTGT TATATCATACCGAAACCAGCAAGACAGCTCAGAAATGAACTTGTAGAGGGCATAAGAGGACTCTTATTTAAAAAAAAAA AAAGAAAAAAAGAAAAAAAGTAAAAAGAAAAAAAAAGAAAAAATTGATACATTCAGTTTTCAGACTATGATCGTGGGTT TTCTTCTAAAGACATTTTTCCACATGCTTTCTGAGAGACCAACACATGTATGTAAATCTACGTTAAGTAAAATGGAATT TTGTGTAAGTGAAAAGAAATGCTGAATGTAAACAAACTGTTTTACTATTCACAAAGTCTCTTTTCCTAAAATAATAATA AAAAAATACAATTAAAAGAGTAATAATTTCTCATTGTAAACTGGCAGGGGTTTGTGAAATAAAAGACTTCTTATCAAAC TGTTGGTCACATGTACAGTATATAACACAAATCACACAAGGAAGGTATTATGTATGCAGTAGAAATCTAGCGTTTAGGA AATGAAAAATTTTAGATAATATTGTTTTGTCACCCTGTTGGTCAGAAAGACACCTTTCTAGTTTTAACGCATGCAGGCA TGTAAATATTTGTCCTGGAGTCACAGTATTAATGAATGAGATCTTAAGCATCTGGTAACAAGTCAGAATTATGTATCAG CCACTTTTATTTGTATATTGAGCCCTGGTTAGTGCCCTGGTTAGTGCACTTTTAAGAATGGACTGTGGCTGAGCAGCAA GTCAAAATGCCAGAAATATTTTTATATGTTAATGTCATATTACGTCAATGTTGCTAAAAAAAGAAAACCTAACAAACAC TTGATGTATCAGTCCAATTCCACGTAGAACTGAGTGATACAGTTGAAGTCTGTTGTCCCTCCCACCTTGTCATAGGGAC TGGTGGTTATGTGTTACTTTCACTGTCTTTATAAAAGCTACAATATGTGTTTTCACCTTTGTGCTGATAACTGGAAGTA AACTGCAACACAGTGCTTATTACATGACTAAAAATTATCTTCTTTGCTTTGCATACTTTTGGGTTACCCCTTTAAAGAC TGATTTTGTGAATCAGTGCTATTACTGTAAGTTTTGTGATTATGCTTTCTTCATCTTTCATGTTTTATGCATATAAAAT ATTATTTATTACATGGAAACATATCAAAATCTTAAATGTCTAAGATGCCTAACTTAAAACAAATGTTTCTTTAAAAATA GTTCTGATTGGATATTAATATTATTTTGTCAAAAAAAAAAAATCTAATGTTTTGTAAACTCTAGCACTGAGCTTCTATA GTTAGTAGGTCTTCCTTGCAATACTGGTACACATTTATTTTGTGCAGTTCATATTTACTCCATCACAATCCTTTTTTAA CAATAGAAAATATGTATATAAAAGTTCACATCATGGTAATTTTTTTTAAAGAAATACTGAGCAATATTTTTCATTAAAT ATTGTTATCTAATACTTTATAGTGACATTATTTTCTAACCATGATTTTTTCGTAATTTTCGTAATTGCCTGAACACTTA TGAGATTCTGTACTCCAGTTTTTTCATATGCAGTCTTTAAAGGGTTAACAGCTGTAAAGTTAGATGGATTTGTGTCAAG CTTTTTAATCATTCATATCTGAAAGAGAATTAAAAGCCTACAACTGAAATATGTAGTAGCATCTACCATTGCTCTGCTC CTTGCATAGAGTCAGCTGTAAGTAGGTTTTAGTAGTTTTACGGTATATACTTTCAAGACCTTTGGGAATGCCTCATTGT TTGGCTTGGTACATAAATGGAAATGTTAAGGTTTAAGGGGGAACCAATTTATAAGCTGGATGTTTAGAAAGAATCTTGC TAAAACCAGTGTAAATATTACAGACCATGAGATGTTAACGTAAGTTGAATTTTTTGCCCCTCTTTAGTTATACAGGTTT TGGGTTGGTATTTTGTTTTTTATTTCAAATTTTGTTTTGTTTTGTTTTGTTTTCATAGATGATGAAGAAAAGTTGTGCT CATGTTATTGTTTATATGCTTTTGTAATCTTAAAGATATTAATGTCTAGTTGTTCTATATTATAACCATATTTGCGCTC TATGCAAGCCCTTGGAACAGAACATACTCATCTTCATGTAGGACCTATGAAAATTGTCTATTTTTATCTATATATTTAA AGTTTTCTAAAAATGAAAAAAAGGTTATTACGAATTTTGTTGTACAAAATCTGTACAAAAATCTGTTTTTACATCATAA TGCAAGAATTGGAAATTTTTCTATGGTAGCCTAGTTATTTGAGCCTGGTTTCAATGTGAGAACCACGTTTACTGTTATT GTATTTAATTTTCTTTTCTTTTCAACAATCTGCTAATAAAACTGTCTGAAATCTC
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001199446 ).