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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SNAI1
snail family transcriptional repressor 1

Gene

Official Symbol	SNAI1
Official Full Name	snail family transcriptional repressor 1
CGNC ID	6068
also known as	zinc finger protein SNAI1\|snail homolog 1\|snail like protein, snail
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205142
Polypeptide	NP_990473
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3851

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	34906			FBgn0001983
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	396047
Ensembl Gene
KEGG	gga:396047

Entry 1

GEISHA Id	SNAI1.UAPCR	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATGCCAGCAAGAAGCCCAACTAC
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGCGACCCAAAGATGTCCAGATGG	cDNA Template Length	832
Complete cDNA Template Probe	show GCCAGCAAGAAGCCCAACTACAGCGAGCTAGAGAGCCAGACCGTGCTGGCTGCCCCGCTGCTGTATGAGACGTGTGCAC TGTCCGTCATCCCTCCACCCGAAGTGCTGGGCCCTGGGGCCTATTACCCGCCGCTGGTGTGGGATGCTGGTCTGCTCTC CAGCCTCTTCCCAGCTGGCCTGGGCACCGAGGCAGAGGCAGCAGGCGGTGCGGCACCAGCCCTGGACCTGACAACACTC TCTAGTGAGGAGGATGAGGGCAAGAGCTCGGGGCCGCCCAGCCCGGCCTCAGCCCCTGCTGCTGCTGAGCGGTTCCGCT GTGCCCAGTGCGCCAAGGCCTACTCCACCTTTGCTGGGCTCTCCAAGCACAAGCAATTGCACTGCGATGCTCAGACCAG GAAATCCTTCAGCTGCAAGTACTGCGAGAAGGAGTATGTGAGCCTGGGGGCTCTCAAGATGCACATCCGGAGCCACACG CTGCCCTGTGTCTGCAAGATGTGCGGCAAGGCCTTCTCCCGGCCCTGGTTGCTGCAGGGCCACATCCGAACGCACACTG GTGAAAAGCCCTTTTCCTGTACACATTGCAACCGGGCCTTTGCTGACCGTTCTAATCTGCGCGCCCACCTGCAGACCCA TTCAGATGTAAAGAAGTACCAGTGCAAAACCTGCTCCCGGACTTTCTCCCGTATGTCGCTGCTGCACAAGCACGAAGAG ACGGGCTGCTCAGGGGCACGCTGAGGACCAGCACTCCTTTCCCGTGCAGATACATGTATTGTACCTAGTGTTTGTAGGA GTTAGTTCCCTCCGTGCTGCCGTTGCCATGCACCTCGGACCGTACGCAGCCACAAGATCTACACGCTCCTATCCTGTGC TCCTGTGCAACCTCAAGGCCTAATCCTGCACCCATCTGG

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Area Opaca
Epiblast
Lateral Plate Mesoderm
Paraxial Mesoderm
Splanchnic Mesoderm

7-12

stage 7

stage 8

stage 9

stage 11

stage 12

Anterior Intestinal Portal
Blood Vessels
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Paraxial Mesoderm
Somites

HH 8-

13-18

stage 15

stage 16

Blood Vessels
Head Mesenchyme
Lateral Plate Mesoderm
Pharyngeal Arches and Clefts
Somites

19-24

stage 20

Leg
Pharyngeal Arches and Clefts
Somites
Wing

25-26

stage 25

stage 26

Ear/Otic Placode
Eye
Face Mesenchyme
Leg Mesenchyme
Nasal Placode/Nerve
Oral Pharynx
Outflow Tract
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Tail
Wing Mesenchyme

Entry 2

GEISHA Id	Snail.Graham.2007	Data Source	Publication
Complete cDNA Template Probe	show GTGGCGCTTGGCAGTACGATGCCGCGCTCGTTCCTGGTGAAGAAGCACTTCTCGGCCAGCAAGAAGCCCAACTACAGCG AGCTAGAGAGCCAGACCGTGCTGGCTGCCCCGCTGCTGTATGAGACGTGTGCACTGTCCGTCATCCCTCCACCCGAAGT GCTGGGCCCTGGGGCCTATTACCCGCCGCTGGTGTGGGATGCTGGTCTGCTCTCCAGCCTCTTCCCAGCTGGCCTGGGC ACCGAGGCAGAGGCAGCAGGCGGTGCGGCACCAGCCCTGGACCTGACAACACTCTCTAGTGAGGAGGATGAGGGCAAGA GCTCGGGGCCGCCCAGCCCGGCCTCAGCCCCTGCTGCTGCTGAGCGGTTCCGCTGTGCCCAGTGCGCCAAGGCCTACTC CACCTTTGCTGGGCTCTCCAAGCACAAGCAATTGCACTGCGATGCTCAGACCAGGAAATCCTTCAGCTGCAAGTACTGC GAGAAGGAGTATGTGAGCCTGGGGGCTCTCAAGATGCACATCCGGAGCCACACGCTGCCCTGTGTCTGCAAGATGTGCG GCAAGGCCTTCTCCCGGCCCTGGTTGCTGCAGGGCCACATCCGAACGCACACTGGTGAAAAGCCCTTTTCCTGTACACA TTGCAACCGGGCCTTTGCTGACCGTTCTAATCTGCGCGCCCACCTGCAGACCCATTCAGATGTAAAGAAGTACCAGTGC AAAACCTGCTCCCGGACTTTCTCCCGTATGTCGCTGCTGCACAAGCACGAAGAGACGGGCTGCTCAGGGGCACGCTGAG GACCAGCACTCCTTTCCCGTGCAGATACATGTATTGTACCTAGTGTTTGTAGGAGTTAGTTCCCTCCGTGCTGCCGTTG CCATGCACCTCGGACCGTACGCAGCCACAAGATCTACACGCTCCTATCCTGTGCTCCTGTGCAACCTCAAGGCCTAATC CTGCACCCATCTGGACATCTTTGGGTCGAGGGTGGGACTCCCATGAGAGGTCGCCACGAGGCCTGGAGCATATGCAGCA CCTTGCAGGTGACACTGCATCTCGATCACAGTGTTGGCATTCGCATGTGACTGT
Citation	Graham A, Blentic A, Duque S, Begbie J. Delamination of cells from neurogenic placodes does not involve an epithelial-to-mesenchymal transition. Development. 2007 Dec;134(23):4141-5. Epub 2007 Oct 24.
Copyright	Published by The Company of Biologists 2007
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205142).

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Head Mesenchyme
Somites

Cranial Mesoderm
Post-migratory Neural Crest

Entry 3

GEISHA Id	Snail.Garcia-Castro.2000	Data Source	Publication
Complete cDNA Template Probe	show GTGGCGCTTGGCAGTACGATGCCGCGCTCGTTCCTGGTGAAGAAGCACTTCTCGGCCAGCAAGAAGCCCAACTACAGCG AGCTAGAGAGCCAGACCGTGCTGGCTGCCCCGCTGCTGTATGAGACGTGTGCACTGTCCGTCATCCCTCCACCCGAAGT GCTGGGCCCTGGGGCCTATTACCCGCCGCTGGTGTGGGATGCTGGTCTGCTCTCCAGCCTCTTCCCAGCTGGCCTGGGC ACCGAGGCAGAGGCAGCAGGCGGTGCGGCACCAGCCCTGGACCTGACAACACTCTCTAGTGAGGAGGATGAGGGCAAGA GCTCGGGGCCGCCCAGCCCGGCCTCAGCCCCTGCTGCTGCTGAGCGGTTCCGCTGTGCCCAGTGCGCCAAGGCCTACTC CACCTTTGCTGGGCTCTCCAAGCACAAGCAATTGCACTGCGATGCTCAGACCAGGAAATCCTTCAGCTGCAAGTACTGC GAGAAGGAGTATGTGAGCCTGGGGGCTCTCAAGATGCACATCCGGAGCCACACGCTGCCCTGTGTCTGCAAGATGTGCG GCAAGGCCTTCTCCCGGCCCTGGTTGCTGCAGGGCCACATCCGAACGCACACTGGTGAAAAGCCCTTTTCCTGTACACA TTGCAACCGGGCCTTTGCTGACCGTTCTAATCTGCGCGCCCACCTGCAGACCCATTCAGATGTAAAGAAGTACCAGTGC AAAACCTGCTCCCGGACTTTCTCCCGTATGTCGCTGCTGCACAAGCACGAAGAGACGGGCTGCTCAGGGGCACGCTGAG GACCAGCACTCCTTTCCCGTGCAGATACATGTATTGTACCTAGTGTTTGTAGGAGTTAGTTCCCTCCGTGCTGCCGTTG CCATGCACCTCGGACCGTACGCAGCCACAAGATCTACACGCTCCTATCCTGTGCTCCTGTGCAACCTCAAGGCCTAATC CTGCACCCATCTGGACATCTTTGGGTCGAGGGTGGGACTCCCATGAGAGGTCGCCACGAGGCCTGGAGCATATGCAGCA CCTTGCAGGTGACACTGCATCTCGATCACAGTGTTGGCATTCGCATGTGACTGT
Citation	García-Castro MI, Vielmetter E, Bronner-Fraser M. N-Cadherin, a cell adhesion molecule involved in establishment of embryonic left-right asymmetry. Science. 2000 May 12;288(5468):1047-51.
Copyright	Copyright © 2000, The American Association for the Advancement of Science
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205142).

Stage

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Location (click to highlight)

Comments (click to highlight)

7-9

stage 9

Lateral Plate Mesoderm
Somites

asymmetrical in the LPM

Entry 4

GEISHA Id	SNAIL1.Delfini.2009	Data Source	Publication
Complete cDNA Template Probe	show GTGGCGCTTGGCAGTACGATGCCGCGCTCGTTCCTGGTGAAGAAGCACTTCTCGGCCAGCAAGAAGCCCAACTACAGCG AGCTAGAGAGCCAGACCGTGCTGGCTGCCCCGCTGCTGTATGAGACGTGTGCACTGTCCGTCATCCCTCCACCCGAAGT GCTGGGCCCTGGGGCCTATTACCCGCCGCTGGTGTGGGATGCTGGTCTGCTCTCCAGCCTCTTCCCAGCTGGCCTGGGC ACCGAGGCAGAGGCAGCAGGCGGTGCGGCACCAGCCCTGGACCTGACAACACTCTCTAGTGAGGAGGATGAGGGCAAGA GCTCGGGGCCGCCCAGCCCGGCCTCAGCCCCTGCTGCTGCTGAGCGGTTCCGCTGTGCCCAGTGCGCCAAGGCCTACTC CACCTTTGCTGGGCTCTCCAAGCACAAGCAATTGCACTGCGATGCTCAGACCAGGAAATCCTTCAGCTGCAAGTACTGC GAGAAGGAGTATGTGAGCCTGGGGGCTCTCAAGATGCACATCCGGAGCCACACGCTGCCCTGTGTCTGCAAGATGTGCG GCAAGGCCTTCTCCCGGCCCTGGTTGCTGCAGGGCCACATCCGAACGCACACTGGTGAAAAGCCCTTTTCCTGTACACA TTGCAACCGGGCCTTTGCTGACCGTTCTAATCTGCGCGCCCACCTGCAGACCCATTCAGATGTAAAGAAGTACCAGTGC AAAACCTGCTCCCGGACTTTCTCCCGTATGTCGCTGCTGCACAAGCACGAAGAGACGGGCTGCTCAGGGGCACGCTGAG GACCAGCACTCCTTTCCCGTGCAGATACATGTATTGTACCTAGTGTTTGTAGGAGTTAGTTCCCTCCGTGCTGCCGTTG CCATGCACCTCGGACCGTACGCAGCCACAAGATCTACACGCTCCTATCCTGTGCTCCTGTGCAACCTCAAGGCCTAATC CTGCACCCATCTGGACATCTTTGGGTCGAGGGTGGGACTCCCATGAGAGGTCGCCACGAGGCCTGGAGCATATGCAGCA CCTTGCAGGTGACACTGCATCTCGATCACAGTGTTGGCATTCGCATGTGACTGT
Citation	Delfini MC, De La Celle M, Gros J, Serralbo O, Marics I, Seux M, Scaal M, Marcelle C. The timing of emergence of muscle progenitors is controlled by an FGF/ERK/SNAIL1 pathway. Dev Biol. 2009 Sep 15;333(2):229-37. Epub 2009 May 13.
Copyright	Copyright © 2009 Published by Elsevier Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205142.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-20

stage 20

Dermomyotome
Myotome
Trunk Mesenchyme

Entry 5

GEISHA Id	SNAII.Darnell.2010	Data Source	Publication
Complete cDNA Template Probe	show GTGGCGCTTGGCAGTACGATGCCGCGCTCGTTCCTGGTGAAGAAGCACTTCTCGGCCAGCAAGAAGCCCAACTACAGCG AGCTAGAGAGCCAGACCGTGCTGGCTGCCCCGCTGCTGTATGAGACGTGTGCACTGTCCGTCATCCCTCCACCCGAAGT GCTGGGCCCTGGGGCCTATTACCCGCCGCTGGTGTGGGATGCTGGTCTGCTCTCCAGCCTCTTCCCAGCTGGCCTGGGC ACCGAGGCAGAGGCAGCAGGCGGTGCGGCACCAGCCCTGGACCTGACAACACTCTCTAGTGAGGAGGATGAGGGCAAGA GCTCGGGGCCGCCCAGCCCGGCCTCAGCCCCTGCTGCTGCTGAGCGGTTCCGCTGTGCCCAGTGCGCCAAGGCCTACTC CACCTTTGCTGGGCTCTCCAAGCACAAGCAATTGCACTGCGATGCTCAGACCAGGAAATCCTTCAGCTGCAAGTACTGC GAGAAGGAGTATGTGAGCCTGGGGGCTCTCAAGATGCACATCCGGAGCCACACGCTGCCCTGTGTCTGCAAGATGTGCG GCAAGGCCTTCTCCCGGCCCTGGTTGCTGCAGGGCCACATCCGAACGCACACTGGTGAAAAGCCCTTTTCCTGTACACA TTGCAACCGGGCCTTTGCTGACCGTTCTAATCTGCGCGCCCACCTGCAGACCCATTCAGATGTAAAGAAGTACCAGTGC AAAACCTGCTCCCGGACTTTCTCCCGTATGTCGCTGCTGCACAAGCACGAAGAGACGGGCTGCTCAGGGGCACGCTGAG GACCAGCACTCCTTTCCCGTGCAGATACATGTATTGTACCTAGTGTTTGTAGGAGTTAGTTCCCTCCGTGCTGCCGTTG CCATGCACCTCGGACCGTACGCAGCCACAAGATCTACACGCTCCTATCCTGTGCTCCTGTGCAACCTCAAGGCCTAATC CTGCACCCATCTGGACATCTTTGGGTCGAGGGTGGGACTCCCATGAGAGGTCGCCACGAGGCCTGGAGCATATGCAGCA CCTTGCAGGTGACACTGCATCTCGATCACAGTGTTGGCATTCGCATGTGACTGT
Citation	Darnell DK, Stanislaw S, Kaur S, Antin PB. Whole mount in situ hybridization detection of mRNAs using short LNA containing DNA oligonucleotide probes. RNA. 2010 March; 16(3): 632637.
Copyright	Copyright © 2010 RNA Society
Comments	Probes were multiple LNAs whose sequences can be found at http://rnajournal.cshlp.org/content/suppl/2010/01/08/rna.1775610.DC1/Supp_figs_S1_S3.pdf. NCBI (acc #NM_205142.1) is given for reference only.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

stage 12

Neural Crest

13-18

stage 15

Blood Vessels

19-24

stage 23

Wing Mesenchyme

25-30

stage 30

Wing Mesenchyme

Entry 6

GEISHA Id	SNAIL-1.Dady.2012	Data Source	Publication
Complete cDNA Template Probe	show GTGGCGCTTGGCAGTACGATGCCGCGCTCGTTCCTGGTGAAGAAGCACTTCTCGGCCAGCAAGAAGCCCAACTACAGCG AGCTAGAGAGCCAGACCGTGCTGGCTGCCCCGCTGCTGTATGAGACGTGTGCACTGTCCGTCATCCCTCCACCCGAAGT GCTGGGCCCTGGGGCCTATTACCCGCCGCTGGTGTGGGATGCTGGTCTGCTCTCCAGCCTCTTCCCAGCTGGCCTGGGC ACCGAGGCAGAGGCAGCAGGCGGTGCGGCACCAGCCCTGGACCTGACAACACTCTCTAGTGAGGAGGATGAGGGCAAGA GCTCGGGGCCGCCCAGCCCGGCCTCAGCCCCTGCTGCTGCTGAGCGGTTCCGCTGTGCCCAGTGCGCCAAGGCCTACTC CACCTTTGCTGGGCTCTCCAAGCACAAGCAATTGCACTGCGATGCTCAGACCAGGAAATCCTTCAGCTGCAAGTACTGC GAGAAGGAGTATGTGAGCCTGGGGGCTCTCAAGATGCACATCCGGAGCCACACGCTGCCCTGTGTCTGCAAGATGTGCG GCAAGGCCTTCTCCCGGCCCTGGTTGCTGCAGGGCCACATCCGAACGCACACTGGTGAAAAGCCCTTTTCCTGTACACA TTGCAACCGGGCCTTTGCTGACCGTTCTAATCTGCGCGCCCACCTGCAGACCCATTCAGATGTAAAGAAGTACCAGTGC AAAACCTGCTCCCGGACTTTCTCCCGTATGTCGCTGCTGCACAAGCACGAAGAGACGGGCTGCTCAGGGGCACGCTGAG GACCAGCACTCCTTTCCCGTGCAGATACATGTATTGTACCTAGTGTTTGTAGGAGTTAGTTCCCTCCGTGCTGCCGTTG CCATGCACCTCGGACCGTACGCAGCCACAAGATCTACACGCTCCTATCCTGTGCTCCTGTGCAACCTCAAGGCCTAATC CTGCACCCATCTGGACATCTTTGGGTCGAGGGTGGGACTCCCATGAGAGGTCGCCACGAGGCCTGGAGCATATGCAGCA CCTTGCAGGTGACACTGCATCTCGATCACAGTGTTGGCATTCGCATGTGACTGT
Citation	Dady A, Blavet C, Duband JL Timing and kinetics of E- to N-cadherin switch during neurulation in the avian embryo DEVELOPMENTAL DYNAMICS. Volume 241, Issue 8, August 2012, Pages: 13331349.
Copyright	Copyright © 2012 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205142.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Primitive Streak

7-10

stage 7

stage 10

Central Nervous System
Lateral Plate Mesoderm
Somites

Entry 7

GEISHA Id	SNAI1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCAGCGGGCGGTGGCGCTGGGCGAGTACGATGCCGCGCTCGTTCCTGGTGAAGAAGCACTTCTCGGCCAGCAAGAAGCC CAACTACAGCGAGCTAGAGAGCCAGACCGTGCTGGCTGCCCCGCTGCTGTATGAGACGTGTGCACTGTCCGTCATCCCT CCACCCGAAGTGCTGGGCCCTGGGGCCTATTACCCGCCGCTGGTGTGGGATGCTGGTCTGCTCTCCAGCCTCTTCCCAG CTGGCCTGGGCACCGAGGCAGAGGCAGCAGGCGGTGCGGCACCAGCCCTGGACCTGACAACACTCTCTAGTGAGGAGGA TGAGGGCAAGAGCTCGGGGCCGCCCAGCCCGGCCTCAGCCCCTGCTGCTGCTGAGCGGTTCCGCTGTGCCCAGTGCGCC AAGGCCTACTCCACCTTTGCTGGGCTCTCCAAGCACAAGCAATTGCACTGCGATGCTCAGACCAGGAAATCCTTCAGCT GCAAGTACTGCGAGAAGGAGTATGTGAGCCTGGGGGCTCTCAAGATGCACATCCGGAGCCACACGCTGCCCTGTGTCTG CAAGATGTGCGGCAAGGCCTTCTCCCGGCCCTGGTTGCTGCAGGGCCACATCCGAACGCACACTGGTGAAAAGCCCTTT TCCTGTACACATTGCAACCGGGCCTTTGCTGACCGTTCTAATCTGCGCGCCCACCTGCAGACCCATTCAGATGTAAAGA AGTACCAGTGCAAAACCTGCTCCCGGACTTTCTCCCGTATGTCGCTGCTGCACAAGCACGAAGAGACGGGCTGCTCAGG GGCACGCTGAGGACCAGCACTCCTTTCCCGTGCAGATACATGTATTGTACCTAGTGTTTGTAGGAGTTAGTTCCCTCCG TGCTGCCGTTGCCATGCACCTCGGACCGTACGCAGCCACAAGATCTACACGCTCCTCATCCTGTGCTCCTGTGCAACCT CAAGGCCTAATCCTGCACCCATCTGGACATCTTTGGGTGCAGGGTGGACTCCCATGAGAGGCGCCACGAGGCCTGGAGC ATAGCAGCACCTTGCAGGTGACACTGCATCCTGGCATGCCACCAGTGTTGGGCATTGCAACTGTGTAGCTCTGGGGGTT GCTCTTTTCTTTTCTTTTCTTTTTTTTTCTTTTTTTTTTTTTTTCCGTAACCACTTGGTAATTTCTAAGAACCAGTATT TTCTTTAATGAAAGACAAAGTGTTAACACAACCTCTTTCCCTCTGCCTCGATTGTGTATAAGCTGCAAGTAGAAGGTGT AACTATGCAATAATACGGTATCACATTAGTTGTGAAGCAGCTGCTTCTCCCTAGCACAATGACAATTTGCAATGCCTAC AAGATTAACGGTGTCCATAAAAGGCATTGGTAGCTATTTCAAACAAGAATCCTGTTTACAGAGCAGCTATGCACTCAAG CACCTGTTAATATGACTCTTAACAACTGCTTTTCAAAGAGGACTGTGACTAATAGCCGGCACTTGTCAGCTGATACAAT GGTGGCCTGTCCAAAGGCTGCCCACCGACAGGTGTGTGCCAGAAGTGCTATTTATGGTTATTGACAGGTGCCTCCTGAA TGCGTCTCTTTGGACATTGTTTTTACAGAATCATAACAAAGAGGATGTTTACGTTTCAAAGGTACACTGGTATTTATAT TTTTGTGCCATGATTTTGTACTGATAAAACTTTTATATAATTATATACAGTTTATTGATATTCAATAAAATGGTTAATT TATAA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205142 ).