GEISHA - A Chicken Embryo Gene Expression Database
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HOXB2
homeobox B2

Gene
Official SymbolHOXB2
Official Full Namehomeobox B2
CGNC ID53816
also known ashomeobox protein Hox-B2
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_003642792
PolypeptideXP_003642840
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3212ENSG00000173917MIM:142967
Mouse103889ENSMUSG00000075588All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:96183
Xenopus100038155, 733446478524
Zebrafish30338ENSDARG00000000175ZDB-GENE-990415-103ZFIN:ZDB-GENE-990415-103
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene429940
Ensembl GeneENSGALG00000025774
KEGGgga:429940

Entry 1

GEISHA IdHOXB2.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGATGAAGCACAAGAGGCAAACACAG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGACGGGATGGGGTGATTGAATGCcDNA Template Length537
Forward cDNA Template Probeshow
NCCGGAAANNNNNNNCAAAATAAGGGGAGATTGGGTTGTTTTGGGGTGACCCCTCTCGTTTGGAGAGCTGGAGCGGCTC
GGGGTGGGACAGCTTGGGATAAACAAAAAAAAAAGGAGGGAGAGCCGGGGGGGACCCCTTTTGGAAATTTAAATTGTTG
CAAATCTTGGGAACAAAGGGCCCGGGAAAAAAATCCCAAATTTCCCCCCAAAAAGGGAGGGGAACTCCCCAGGGATCCC
TGCAAACCCGAAAAAACTTCCGGGCAGAATTTTCCCAAAAGAATGTTAATTTCCGGCACCAAAGGAAACCCCGGGTTCT
GGGAAAACCCAACCCCCAAGGGGGGGGCCCCGGGCCAATCGTTCCCCCAAGGGTTGGGGGGTTCCTCGGCTTGCCCCCC
CCGTTAGGGCCCGGGGAAGGGCCCCAACGGGGGGTTTTCCTCGCCCTCTTCCGGGGTTTCGTTGCCCTCTCCAAGGCGG
GGGAAACCAATTCCCCCTCCGGGGGGTTTTTTGACCGGGTTTGCCCCCTGGGGCTTAACAAA
CommentsNo expression detected at or before stage 4.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
Early Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
 
7-12
stage 9
stage 10
Intermediate Mesoderm
Neural Plate/Tube
Rhombomeres
 
13-18
stage 13
stage 13
stage 15
stage 17
Hindbrain
Intermediate Mesoderm
Lung
Myotome
Neural Plate/Tube
Rhombomeres
Somatic Mesoderm
Somites
Spinal Cord
 
19-24
stage 21
stage 22
stage 23
stage 24
Anterior/Second Heart Field
Hindbrain
Lung
Myotome
Rhombomeres
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Section taken just above the heart.
25
stage 25
Anterior/Second Heart Field
Hindbrain
Lung
Myotome
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
 

Entry 2

GEISHA IdHOXB2.Barak.2012Data SourcePublication
Complete cDNA Template Probeshow
GAACCATCATCATCACTGCCATAAAAACTGAGGCCCTCAGATTTCTTCCTCTCTTCCCCTCCTCCTTCCTCCCCCCTCC
CGCTTTTTAAACCCTGGGCCCTGGAAAAGCCATGAATTTTGAATTTGAGAGGGAGATCGGGTTTATAAATAGCCAGCCT
TCGCTCGCAGAGTGCCTGACGTCTCTTCCCGCTGTCCTGGAGACATTTCAAACTTCATCAATCAAGGACTCGACATTAA
TTCCTCCTCCTTTTGAGCAAACCGTCCTCAGCCTGAATCCTTGTTCCAGCAGCCAGGCAAGACCGAGGAGCCAAAAAAG
AGCATCCCATGGCCTGCTCCAGCCTCAGCCTCCGGCACAGCCCGGCCCCTTGGCAGCGGAATTCCCCTGGATGAAGGAG
AAGAAATCGTCCAAGAAAGCTACCCAGGCTCCATCCTCGTCTTCCTCTTCTTTCCCCCCATCATCTTCCTCGGTGCCGA
TCCCCGCCGCAGGATCTCCTGCAGACACGCAGGGGTTGGCAGACAGCAGCGGCTCTAGGAGGCTCCGGACAGCGTACAC
CAACACACAGCTCCTGGAGCTGGAGAAGGAATTCCACTTCAACAAATACCTCTGCAGGCCCCGTCGGGTGGAAATCGCG
GCTTTGCTCGACCTGACCGAGCGACAAGTCAAAGTGTGGTTCCAGAACCGCAGGATGAAGCACAAGAGGCAAACACAGT
ACAAAGAACCCCCCGACGGGGACATCGCTTACCCCGGCCTGGACGAGGGCAGCGAAGCCACGGATGAGGCCGAGGAGAG
CCCCGCGTTGGGGCCGTGCCCGGGGCCGTACCGGGGTGCGCAGCCCGAGCAGCCCCGCAGCCCTCGGGGTACCGATCGG
CCCGGAGCCCCCCCCTCGGAGCTCGGCTTTCCCGAGAGCCAGGGCTCGCCTTGGTTGCCGGAACTCAGCATCCTCTCGG
CAGAGTCCTGCCTGCAGCTCTCTCCGGCTCTGCAGGACTCCTTGGAGAGTCCCCTCCACTTCTCGGAGGAAGATCTGGA
CTTTTTTACCAGCGCACTTTGTACCATAGATCTGCAACACTTCAATTTCCAATAGCGGTCCCCGCCTGTCTCTCTCTCT
TTTTTTTTTTGTTTATCCCTTTCTGTCCCACCCCGAGCCGCTCCAGCTCTCCAAACGAGAGGGGGTCACCCCAAAAACA
AACCCAAATCATCCCGCATTCAATCACCCCATCCCGTTCGACGGACATTTTAAAGCTCTTCAAGTTGAGGGACCCGAAT
CTCAGCCGCAGTATTTATTTGAGAAGGCTCATATAAAAAGAGCTTTTTATTTACAAGATAAATTAGTTGCTAAATGGTA
GGCTTGTTCCTTATTTATTTTAAAGGAGGCACCCAATAGTTTCCATGCGCATCAGAGATGACCGCCCTCGAGAGAAAAC
CATTGTGAATCCTCCAAGCGACTTTCTCAGGAATCAGAATGAGCCTTTTAGATTTCTTAAGGAAATAATAATGAGAAAA
AAGCAGAGGAATTTTCGTTCCTCCTTTTTAAGTTTTAGATGTAGATTATTTATTCAGATCCTTTAATAGCAAATGGCAA
ATTATTTATTGTACATTATTTTCATAGAGTAAATAAATGCCTTTATAAAACCGAGGGAA
Citation Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_003642792.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 6
stage 6
Epiblast
Lateral Plate Mesoderm
Primitive Streak
 
7-11
stage 7
stage 7
stage 8
stage 8
stage 9
stage 9
stage 10
stage 10
stage 11
stage 11
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
Somatic Mesoderm
Somites
Tail
 

Mouse

EmageMGI:96183
EurexpressMGI:96183
MGI GXDMGI:96183

Frog

Xenbase478524

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-103
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