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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CDH19
cadherin 19

Gene

Official Symbol	CDH19
Official Full Name	cadherin 19
CGNC ID	10314
also known as	cad19, cadherin-19, cadherin19, cadherin-19\|cadherin 19, type 2, Cadherin-19 precursor
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001100287
Polypeptide	NP_001093757
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.23862

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	28513	ENSG00000071991		MIM:603016
Mouse	227485	ENSMUSG00000047216	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:3588198
Xenopus	100493723			6045914
Zebrafish			ZDB-GENE-130530-766	ZFIN:ZDB-GENE-130530-766

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	421029
Ensembl Gene	ENSGALG00000013775
KEGG	gga:421029

Entry 1

GEISHA Id	CDH19.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GGAGTTGTAAGTGGCTCATTGGTAG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGGGTTTGTGTGTTCTCAAGACAGCG	cDNA Template Length	878
Forward cDNA Template Probe	show GCTGAAATATCAAAAGCTTCTGGTGGTCCTCCTCACCACCTCCTTCATCATCATATCTGACAATGTTCTCTCTGAATTC TTCCACTTTCTCTGAAAAGAGAGTCTTCTTCCTCTGCTGTCTTATGCCTATAATCGCCAAAAAGAACACCAGGAGTATT AGTAGGCAAGCCAAAACAGCAACTAAAGCTTCTGTGCTGAGGCCTATGGAATACAGGAAAGCTCCATATCGACAGTATA AGGTGTTCACTTCAGTATCACAGTCACAGACAGTGACAGTGAGTGTATTTGTGCTTGTAAGTGGTGGAGATCCATTATC CAGAATTAAGATTGGCAAGAAGAAATAAAACTGCTCTNTTCTACTGAAGCCACTTCCTGCTGTGAAAATTCCAGCTGTG TTATCTTGATTATCTTTGACAGTAAAATGTGAGCTGTTTGTGGCCTGAGCCAATGAGAAGTAAAATCGGTGATTTTCTG CTGAATCATCTTTATCCACTGCACTGATGTTTTGAATTAGCTGACCAGGTACTGCATTTTCACAAACAAATGTTTCATA ATATTTAGAGAATTCTGGTGCATGGTCATTTACATCAAGAACTTGGATATATACATTTGCTTCTGAAATTTTTTCAGGA TTTCTAGTTTCTGTGGCTGTAACAGTTATGTTGTGCCAAGAAGCTTTCTCTCGGTCCAGAGGTTCAGTTGTAATGATTG TTCCATTGTGTTCATTGATGCTGAACAATCTCTTTAAATGCAAGCCTTGGACAATAGAATACCTGACTGAGCTGTCATC ATTGTCCAGATCTCTTGCGGATACAGTTCCTACCAATGAGCCNNTTNACAANCTCC

Stage

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Comments (click to highlight)

7-12

stage 10

Unlabeled

13-18

stage 18

Amnion
Eye
Forebrain
Foregut
Heart
Hindbrain
Midbrain
Notochord
Pharyngeal Arches and Clefts

19-24

stage 19

stage 23

Eye
Forebrain
Foregut
Heart
Hindbrain
Midbrain
Myotome
Notochord
Pharyngeal Arches and Clefts

25-27

stage 27

Atria
Spinal Ganglia and Nerves
Ventricles

Entry 2

GEISHA Id	Cad19.Jiankai.2007	Data Source	Publication
Complete cDNA Template Probe	show CCAAAGATATGGTTGGACAAGCAGGAGCATTTTCAGCAACGGCCACTGTTACCATCAACCTCTCTGACGTCAATGACAA TCCACCTAAATTTCAGCAGAGACTCTACTATTTGAATGTCTCCGAGGAAGCTCCTGTGGGCACAACTGTAGGCAGACTC TTGGCAGAAGACAGCGACATAGGGGAGAATGCAGCCATGAACTATTTCATTGAAGAAGATAGTTCAGATGTTTTTGGCA TCATTACTGATAGGGAGACTCAGGAAGGAATTATCATACTAAAGAAGAGAGTGGATTATGAGAGCAAGAGAAAACATAG TGTTAGAGTAAAAGCTGTAAACAGGTACATTGATGATCGTTTCCTTAAAGAAGGACCATTTGAAGACATAACTATTGTA CAAATCAGTGTGGTAGATGCTGATGAACCTCCAGTTTTCACCTTGGAGAGCTACGTGATGGAGATTGCTGAAGGAGTTG TAAGTGGCTCATTGGTAGGAACTGTATCCGCAAGAGATCTGGACAATGATGACAGCTCAGTCAGGTATTCTATTGTCCA AGGCTTGCATTTAAAGAGATTGTTCAGCATCAATGAACACAATGGAACAATCATTACAACTGAACCTCTGGACCGAGAG AAAGCTTCTTGGCACAACATAACTGTTACAGCCACAGAAACTAGAAATCCTGAAAAAATTTCAGAAGCAAATGTATATA TCCAAGTTCTTGATGTAAATGACCATGCACCAGAATTCTCTAAATATTATGAAACATTTGTTTGTGAAAATGCAGTACC TGGTCAGCTAATTCAAAACATCAGTGCAGTGGATAAAGATGATTCAGCAGAAAATCACCGATTTTACTTCTCATTGGCT CAGGCCACAAACAGCTCACATTTTACTGTCAAAGATAATCAAGATAACACAGCTGGAATTTTCACAGCAGGAAGTGGCT TCAGTAGAAAAGAGCAGTTTTATTTCTTCTTGCCAATCTTAATTCTGGATAATGGATCTCCACCACTTACAAGCACAAA TACACTCACTGTCACTGTCTGTGACTGTGATACTGAAGTGAACACCTTATACTGTCGATATGGAGCTTTCCTGTATTCC ATAGGCCTCAGCACAGAAGCTTTAGTTGCTGTTTTGGCTTGCCTACTAATACTCCTGGTGTTCTTTTTGGCGATTATAG GCATAAGACAGCAGAGGAAGAAGACTC
Citation	Luo J, Wang H, Lin J, Redies C. Cadherin expression in the developing chicken cochlea. Dev Dyn. 2007 Aug;236(8):2331-7.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	The accession number given in the paper is EF608155. Primers used to make the probe are: Cad19-anti-2 5-gctcctgcttgtccaaccatatctttgg-3 and Cad19-sense-2 5-gcataagacagcagaggaagaagactc-3.