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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ARHGAP28
Rho GTPase activating protein 28

Gene

Official Symbol	ARHGAP28
Official Full Name	Rho GTPase activating protein 28
CGNC ID	10945
also known as	rho GTPase-activating protein 28
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_419140
Polypeptide	XP_419140
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.49221

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	79822	ENSG00000088756		MIM:610592
Mouse	268970	ENSMUSG00000024043	All phenotypic alleles (4):Targeted, other(4)	MGI:2147003
Xenopus	100488165			1013084
Zebrafish	492794	ENSDARG00000005872	ZDB-GENE-041114-147	ZFIN:ZDB-GENE-041114-147

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	421053
Ensembl Gene	ENSGALG00000014758
KEGG	gga:421053

Entry 1

GEISHA Id	ARHGAP28.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GTTCCTGAAGAAGGTGGTTG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGGCATAACTGATGTGCGGTATTC	cDNA Template Length	841
Forward cDNA Template Probe	show AAAATGGTCAGAACTGGATGATAATTCTTAATGCCAAAAGTAGCACATGATGAACATCTGTTGGACAGTATGGTAGAAA GGAATGATATCCTGTAGGTAGCTACCATTTTGTTTTCATCAGTGGCAAGAGGCGAGAGCTTCTTCAAATGTCAGGCATC ACAGTTGTTCATTTGGCCTTTGTCCAGTATGCTGCCGCCTTGTGCTTCAGCTTGCTTTTGGTTTTATCACCCATTCTGC CTGAGGATTTGCACGGTAAACATCTAACATGTATGCATCTGGATCCAAACAGTGCTGACCTATATTTCCTCCAACTTCA TGTAAACTTTGGATCTGGCTTCTCACATTCTGTGACAATCCACGGCTGTTTTCACAGTGGAATCGAGCCAGGATGTCTT TGGCTTTTGTTTGGCTGTTGAGTTGAATTGCCATAGAGACTTTTGAATGCAGTGGTGCATAAACTCTTATCACCCCCTC GGGTATGTCAGACTGCAGGTATGGGGGAAAAGTGACAGCTCCCTCTGGTCTTTCAGGTCTCTCTCTCTCCATGGTCTTT CTCCTTAGAAGTTTTCTCACTCCTTTGTCAAACATCAGCTGCCTCTTGCTGTTGTTTATTGCTGCCTCATTCATTTTCC TCACCTGGGAAATCAGGAAGGATGGAACTGTCCACAGGATATCCTGGTACCGAATTAAAAGCCGTACAATGTGTGCAGT GGTGGCAGCTGCTTGCATTTCTTGTTGGTTTGCACGTTTCCCTTTGTAGATGAAGAGGTTTGGTGCAACAATCATAGAA ACATTCCACAAATTCATTTTATTTTTCCCTTCATTAGCAACCACCTCTTTT

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Head Process
Lateral Plate Mesoderm
Paraxial Mesoderm

Low level of expression

7-12

stage 7

stage 8

stage 12

Extraembryonic Mesoderm
Head Process
Lateral Plate Mesoderm
Paraxial Mesoderm
Primitive Streak
Somites

13-18

stage 13

stage 15

stage 16

Anterior Intestinal Portal
Blood Vessels
Endocardium
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Midbrain
Myotome
Neural Crest
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somites

19-24

stage 21

Endocardium
Eye
Gut
Head Mesenchyme
Mesonephros
Myotome
Pharyngeal Arches and Clefts
Somites
Trunk Mesenchyme

25-27

stage 27

Allantois
Endocardium
Eye
Forebrain
Hindbrain
Midbrain
Pharyngeal Arches and Clefts
Somites

Entry 2

GEISHA Id	ARHGAP28.Roy.2013	Data Source	Publication
Complete cDNA Template Probe	show CTTTGTGATCATAGGCTGAGAAAGAACTTACTGCCGCTAGGAGCATGAAGAAGTTGAGTTTCAGAAGGACTCTGCCCTG CTCCCTTAAGGATAGCACCAAGGATTTGTTCTGCTGCGAGAAAATCTCTTCCTCGCTGCCGAAGAATTAATAGGATGCT TTCCAATGAGTCAATGCCAACAAGTCCTCCAGCATTCACTCGCTCCAACTCTCAGGCCTCCGTGGACAGCACCTCCATG GAGGACTTCTGGTGCGAAGTGGAGAGCATCAAGGAGAGCAGTGAAGATGGGCCTGAAGAAGCAACACTCTTGGAGTTCA AACCTGCTGACGAAGGGGAACTGGAGGCTGAGTGGCTGCAGGATGTAGGCTTATCTACCCTGATCTCAGGAGCTGAGGA GGAGGATGGCCAAGCCCTGCTGTCCACTTTGACCCGAACACAAGCTGCTGCTGTACAGAAGAGGTACAACACATACACT CAGACCCTGAGGAAGAAGAACAAGCACACGGTCCGGGATGTGCGAGATATCTTTGGCACCAGTGACTCTTCTCCCACAT TTGAGACAGTTCCAGTGTCACCAGTTCCTTCTAATGGTATCCAGCTTCCTGGGCAGAAGCCAGTTTGGAAATCAGTTAG CTCTAATAGCTGTCTAGACTGTGGACTAGATAAAGGCAGTTCGTCTATAACAGAAGAGCTCTCCTATGAGGTCTCTTTC TCAGAATCCATTACAGTCCTCCCAAAAACCCGAGAGTGGACAAAGAGCCAGAGGTTCAAAAAGGAAGACTCTGCTTTGC CAAAATTCATTGTTCGGAAAAGCCGATTTGGACTGACAGAGGTTGGAGATCTCTCTCCTGAAGACATGAAGAAGATCCG CTACCTCTCCCTGATTGAGCTAACAGCCTTCTACGATGCCCTGGGTGTGGAGCTGAAGAGGAACCGTGCGGAGAGAGTG CGGAGACGAGAAAACGGTCTTTTTGGAGTCCCCCTCACAGTGCTTCTGGAGAATGATCAGAAGAAGGTTCCTGGAATAA AAGTTCCTCTCATCTTCCAAAAGTTGCTGCTCAAGCTTGAGGAAACTGGTTTAGAAACTGAAGGAATTCTTCGAGTGCC CGGATCTGCCTCCAGGGTTAAGAATCTCCATCAAGAACTTGAGGCAAAATTTTATGAAGACACATTTGACTGGAATCAA GTACGAAACAACGATGCAGCAGGACTGCTTAAAATGTTTATAAGAGAACTCCCAAGTCCACTATTCACAGTGGAATATC TGCCTGCTTTCATCACCTTAGTGGAAAAAATCCCCAAGATCAAGTTACAGCTTCAAGCTTTGCATCTGTTGATCATGCT GCTGCCTGAAGCCAACAGGGACACAGCTAAGGCCTTCCTTCAGTTCCTGAAGAAGGTGGTTGCTAATGAAGGGAAAAAT AAAATGAATTTGTGGAATGTTTCTATGATTGTTGCACCAAACCTCTTCATCTACAAAGGGAAACGTGCAAACCAACAAG AAATGCAAGCAGCTGCCACCACTGCACACATTGTACGGCTTTTAATTCGGTACCAGGATATCCTGTGGACAGTTCCATC CTTCCTGATTTCCCAGGTGAGGAAAATGAATGAGGCAGCAATAAACAACAGCAAGAGGCAGCTGATGTTTGACAAAGGA GTGAGAAAACTTCTAAGGAGAAAGACCATGGAGAGAGAGAGACCTGAAAGACCAGAGGGAGCTGTCACTTTTCCCCCAT ACCTGCAGTCTGACATACCCGAGGGGGTGATAAGAGTTTATGCACCATTGCATTCAAAAGTCTCTATGGCAATTCAACT CAACAGCCAAACAAAAGCCAAAGACATCCTGGCTCGATTCCACTGTGAAAACAGCCGTGGATTGTCACAGAATGTGAGA AGCCAGATCCAAAGTTTACATGAAGTTGGAGGAAATATAGGTCAGCACTGTTTGGATCCAGATGCATACATGTTAGATG TTTACCGTGCAAATCCTCAGGCAGAATGGGTGATAAAACCAAAAGCAAGCTGAAGCACAAGGCGGCAGCATACTGGACA AAGGCCAAATGAACAACTGTGATGCCTGACATTTGAAGAAGCTCTCGCCTCTTGCCACTGATGAAAACAAAATGGTAGC TACCTACAGGATATCATTCCTTTCTACCATACTGTCCAACAGATGTTCATCATGTGCTACTTTTGGCATTAAGAATTAT CACTCCAGTTTCTGGACCATTTGAATACCGCACATCAGTTATGCTTTCCTATGGATTGTGCTTGTGCTAGAGTTGGCCC AGGAGTTGAGGAGGACAGACCAAGGTACGGAGGCACAGAAAATAGCCCATCATATATGGAGTTCTTTGTTTCCTGACCT GGCATTGGAACATGGATTCTGCAGGAGGAAATAATCCAGTGGCATCCAAGGATGCATGAAACACTACCGACCACAACGT AACACAGAGGCATCACAGAGACATTCAAGGAGAAGGTATCTGTCAAGCACAAAACAGAGGATCTCAACCAGCAGCAGTG CCAAGAAGGAGCCATGTGACAAAATCAAACATTTCTGCCAAAAGTAAACCTGTGCAGAGTGTGTTACTGCAATATTTAT ATCTCTCAGTCACTCCTCATGAGTATTTGGTGCTGGGGAAGGGAGGGAGGGAGGCAAGGGGAAGAACTACTGTGTAGAC AGCTACACTGCTTTATGTATGTACCACTGTATATATTACTATCAGTCTTCTGAAACCGTCTGTCTGGATCTCGTTACTG TGTGCATTTGTAGCACCACAAACCATTTCCTCCGTCCTTCCCTGTCTCACACACAAGCTTCATGACATGAATGGTAGGT GAGAAGACATATTTTCTGGCTCCATCTTTTACTTTATATTCTCAGATTTAAGTCTGTGTAATGCCACACTATGAGTTAT GTGTTAATGGTGCCACTTACGGACATCATGTTTTTCATTAAATGTTATAGTTTCTTAATTTGTAAACTAATTATTTTTC TTTTATTTTAGCTTCAGTATGTAGGCAGTTTTTATACTATTCACCTGCATTGAGAAGAAATATCTTCACCCAGATCTTG TATGGCATGGCACAGAGAAAAAGCTTCCAATGAGAAGAGGGGTTTAATACTCTTATTTAGCTTTTTCACAACGGGGACC TTAAGACCACAGCCAAACCAGGCCCAGTTGTGCTAGGTTTTCTACAAATACATAGTAAACTGCAGCTACTTTTGCTGGT TGCGTGCAGTCTGTGAAAACATGTAGGGTGACAAGAGAACAGTGGGTTCTAACTGCATTGACAGTATAGAGTAGGAAAT ATAAGGCAGGATGTCTAGTTGGCAGCCAATCACTAGGGTGAGCACCATTCTTCACCCAACCATCTGGTTCTGGGCTATT CTTTATGTAAATAAATAATGTGAAGTAAATAATGTTTGTTGAGTAAGGAATACACAGGTCTCTGTAAAACAGCAAATAT TTTTTCATCTTTGTCTTATCAAAAGAATGGGAACACCTTCAAACACACTGCAGTGTTACCATCATCACACAGGTGTGTT GCACAGTGAATTCACCCACTGTGGTCAGCTAGTACTGTTCATTATCTGGACACACAGATGAGCCTGAAGCCGATGCTTC AGGTACCAACTAGCAATGTAAAAGCCTTCTGAACCAAGTCTTCTAGGTAAACATAGAGTATACTGTACTATAGAGAAAC CCTGTAGGTTGTGACAAGCTTCTGAAGCTTCATGATGATGATGATTTTCACATTTGAGAAACCCTAGTTCCGGTTCAAA GCAAATTGGGATCTGCACTCGTTAATTTTCTTTGTTCGTGTTCAGTGAAAGAAATCACCTTCTCATCTGCACTCTTACC AGCAACAACATCTACAAAGGGCAGATCCTGCCTTTCTGTTTTTCCTTCTTTAGATAAAATACAAACTTTAGCAGTGTTG TTGGGTTTTTTGTCTACTTTAAAATGTGTATAATTTTTAACTTCCTGTTGTTTTCTTTTTCTTTATCATAACACTAATG GGTGCATAGTTGCAGCCAGGCTAAGTCTAGGACAGTTTTGTTATAAAATGCACTACTTATTTTGACAACTATTTATTTT ACGTGTAAGAGGGAGAGAGAGTAAAACTGTGGTTTGCTCATAGGCCTAGTTATTAATGTTTTGTCATGTGCTTTTTTCC TGATTCCAGTTAGTTCCCTCTGTGACCGTGGACAATCCTTTCTGCCATGCTGCCCTCCTTATAAAGGTAATATGAGAAT TAGTTGGAGTCAAATTCTGCTCTCAGACACAGCCAAACAGCTTCACTAACAGAGCAAGAATTATAAATATCCATCTAGG AAGGACAAACTAAGTAAAGGGATTTTATATGGAAAGTGCTTTGAAAACAAAGAGCATAACATAAATGCTAAGCACCATT GTATTTATAACCAACAAAAAAGCTTTTATGACTATATGGAAAGTCTGAAGATTAGCTAAAGAATTTGAAATATCATGGC AAATAAGGCAACTCTTTCTATAGTACCACCTTCAGACAAACACACTGACTTTCATCATCTTCTCACTCAGACTGTGTTC TCAGGTCTGTACACAGGAAGGAAAAGTAGAGTACTTGTGCATTCAGGACCCTGAAATGAGGACTTCATCAAAAAATGTA TCTTAAATATCATTGTTCTCTGCACTGAATACAAGGGGTTATTAGAAGACTTTCACCTTTTACCACTTCGCCACTTAGA AAAGAAAAATCTGAGGGAATGAAATCTGTTCTGTGAACCCTTATTTCATACTAAGGTTGCCCATAACTTTCTAAGACGT GCGCATTAGTAAATGACCTCGACTTTCCAAACAGTACCCCAAGTACTATAGTATGGCCAAACACCTGCTGTCACTGAAA CAGAATGGCACAATACTTTTTTGATATGAATGAACCTAATGATCCATGTGTACTGCAGTTAATATTGTTAAACATTAAG TTGTGTCGTGTTGGTGTGGTACACTAACTTGAACTCATATGCAGCAAAGCAAACAATCTCACCAGTATTTTTTAATGCA AAGTTTCAACTTTAGGCCTTAGAATTCAAGATGCTGACGGGGAGCCTGGAATTTTGCTCCTCCTAGCAGTAATTCAATT AAAAACAAAGATGTGGTAATATTGTCACCTAAAAAAGAGCAATGTATGTGAAAGCTATTAGCCAGAATGTGGCAGCAAG CAGGAAGAAACTTGTTCAACAAATTCCAAAGATGCCTCAAACATCGATATTCTCCAACTAATATATTCCATGGTTCTAG AAAGACAGCATTTCACTTGTCCACACATACAGAATGCTGCAAGAAATAGGTATTGGAAGCAAACTGGAATGCTCTCACC TGTTCATACAGCTAAGGTCATTATAACGTGTGCATGTGTGCAAATGTGTCTGCATCTGCATCTAATAAAAACTACCTCA CTTCCCATTTTCCAGGAACAATATTTTGGCTTAGAGGTTTAATATTCCAAAGCTTTCTATTAGTAATTATACCTCTGTA TTAGTCTTTTACATAGATAAAATATTTCTTGCTGTAGGGGACAGGACTTGGAAATAACCTCTATATATTAAAAAGCATA TTCGAGGGTAGGGACAAAACTATCCAAACCCTGCTGCCTCACTGACTGCTTGTAATGTGAACCTTATCAGACCACATCT TGGGGTTAAAAGACAACAAACACAAACAGTGTTTCAGTTTTTATTTTTCAATGGCTTTCCATTAATGTCTGTCTTCTCT GGAAAATAATACAATGCCACTAAGCAAAGCAAAATGTCTGCATGTACATTTTCCTTACGCTCCTTTTTATAATGTTAAG TGTTTTGTTGATGTAAGCCCACATATTAGTGTATTCTGTACAGCAGAATGTGTCCATTGTATTTGTATTCATGTCAAAA ATAAAAACAGTACCAACAAAAAAATCTC
Citation	Roy P, Kumar B, Shende A, Singh A, Meena A, Ghosal R, Ranganathan M, Bandyopadhyay A. A Genome-Wide Screen Indicates Correlation between Differentiation and Expression of Metabolism Related Genes. PLoS One. 2013 May 22;8(5):e63670
Copyright	This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_004939751.1