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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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EDAR
ectodysplasin A receptor

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	EDAR
Official Full Name	ectodysplasin A receptor
CGNC ID	12611
also known as	tumor necrosis factor receptor superfamily member EDAR\|ectodysplasin A1 receptor, EDAR
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001012611
Polypeptide	NP_001012629
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.22980

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	10913	ENSG00000135960	MIM:129490	MIM:604095
Mouse	13608	ENSMUSG00000003227	All phenotypic alleles (9):Spontaneous(4) Chemically induced(1) Targeted, other(2) Transgenic(2)	MGI:1343498
Xenopus	448544, 380208			945378
Zebrafish	796370		ZDB-GENE-070117-2062	ZFIN:ZDB-GENE-070117-2062

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428015
Ensembl Gene
KEGG	gga:428015

Entry 1

GEISHA Id	EDAR.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-AAGAATGTGCAGGGGCTACC-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGGCTGCATGCCATCTGTCATG-3’	cDNA Template Length	756
Complete cDNA Template Probe	show AAGAATGTGCAGGGGCTACCTCTGGCATTTCAGCCATTTTCCCGAGCACGTCTGGCACAAGTACTTTCTCACCTTACCA GCATGCTCACAAAGCAGACCTTTCAGGACAAGGACATCTGGCTACAGCTCTGATAATTGCAATGTCTACCATATTCATA ATGGCTATTGCCATTGTCCTCATCATCATGTTTTACATTGTGAAAACCAAACCTTCTGCTCAAGCCTGTTGCAAGAGTC ACTCAGTAAAAAATGTCGAAGCTCAGGCTAATACTCAAGAAGAGAAGAAAGAAGTACAAGATAATGTTGTGATATTCTC TGAGAAAGAAGAGTTTGAAAAACTTACAGCAACTCCAGCTAAGGCTGCTAAAAGTGAAAACGATGCATCTTCTGAGAAT GAACGACTTCTAAGTCGTAGCATGGATAGTGATGAAGAAGCTGCAGTTGACAAGCAAGGGACACCAGAGAGATGCTTGT TATCATTAGTGCATTTGGCCAGAGATAAATCTTCCACAAGCAATAAATCAACTGGGATTCAAAGTCGAAGAAAGAAGAT ACTTGATGTGTACGCTAACGTGTGCGACGTTGCAGAAGGCCTGAGCCCTACGGAGCTGCCTTTTGACTGTCTGGAGAAG ACCAGCCGAATGCTCAGTTCAACATACAATACTGAGAAGGCCATAGTGAAAACGTGGCGTCACCTTGCTGAGAGCTTTG GGCTGAAGAGGGACGAAATTGGTGGCATGACAGATGGCATGCAGC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Unlabeled

7-12

stage 8

stage 9

stage 11

Head Mesenchyme
Neural Plate/Tube

13-18

stage 16

stage 17

Ubiquitous Embryonic
extraembryonic ectoderm

19-24

stage 21

stage 24

Eye
Foregut
Head Mesenchyme
Leg Mesenchyme
Lung
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme

25-26

stage 26

Foregut
Head Mesenchyme
Leg Mesenchyme
Mesonephros
Pharyngeal Arches and Clefts
Sclerotome
Ventricles
Wing Mesenchyme

Entry 2

GEISHA Id	Edar.Drew.2007	Data Source	Publication
Complete cDNA Template Probe	show GTAAAATATCAAGAGAACATGGCTCACCTGGGTGAATGTAAATGGACTCATGTGTTCCCTTTTCTGGTGGTTTCCTTGG TGTACTCTGCCAGCGCTGAATACTCCAACTGCGGTGAGAACGAATACTACAACCAAACCACTGGCATGTGCCACGACTG CCCCAAATGTGAGCCGGGTGAAGAGCCGTACATGACATGTGGGTATGGCACCAAAGATGAGGACTATGGCTGCATTCCC TGCCCATCAGAGAAGTTTTCCAGAGGAGGTTACCAGATATGCAGGAGGCACAAGGACTGCGAGGGATTCTTTCGAGCCA CTGTCCTGACACCAGGCGATCAAGAGAACGATGCAGAGTGCGGGCCTTGTCTCCCAGGTTACTACATGCTGGAAAACAG ACCTCGAAACATATACGGAATGGTTTGCTACTCATGCTTGTTGGCACCTCCTAACACCAAAGAATGTGCAGGGGCTACC TCTGGCATTTCAGCCATTTTCCCGAGCACGTCTGGCACAAGTACTTTCTCACCTTACCAGCATGCTCACAAAGCAGACC TTTCAGGACAAGGACATCTGGCTACAGCTCTGATAATTGCAATGTCTACCATATTCATAATGGCTATTGCCATTGTCCT CATCATCATGTTTTACATTGTGAAAACCAAACCTTCTGCTCAAGCCTGTTGCAAGAGTCACTCAGTAAAAAATGTCGAA GCTCAGGCTAATACTCAAGAAGAGAAGAAAGAAGTACAAGATAATGTTGTGATATTCTCTGAGAAAGAAGAGTTTGAAA AACTTACAGCAACTCCAGCTAAGGCTGCTAAAAGTGAAAACGATGCATCTTCTGAGAATGAACGACTTCTAAGTCGTAG CATGGATAGTGATGAAGAAGCTGCAGTTGACAAGCAAGGGACACCAGAGAGATGCTTGTTATCATTAGTGCATTTGGCC AGAGATAAATCTTCCACAAGCAATAAATCAACTGGGATTCAAAGTCGAAGAAAGAAGATACTTGATGTGTACGCTAACG TGTGCGACGTTGCAGAAGGCCTGAGCCCTACGGAGCTGCCTTTTGACTGTCTGGAGAAGACCAGCCGAATGCTCAGTTC AACATACAATACTGAGAAGGCCATAGTGAAAACGTGGCGTCACCTTGCTGAGAGCTTTGGGCTGAAGAGGGACGAAATT GGTGGCATGACAGATGGCATGCAGCTGTTTGACCGCATCAGCACAGCGGGCTACAGCATCCCGGAACTGCTCACCAAAC TGGTACAAATCGAGCGGTTGGATGCTGTCGAGTCTCTGTGTGCAGATATTCTGGAGTGGGCACAAGCAATGCCTGCTCC TGAACCAGCAGTGACGTCCTGA
Citation	Drew CF, Lin CM, Jiang TX, Blunt G, Mou C, Chuong CM, Headon DJ. The Edar subfamily in feather placode formation. Dev Biol. 2007 May 1;305(1):232-45. Epub 2007 Feb 16.
Copyright	Reprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
Comments	As information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# NM_001012611.1) [Authors said: cEdar: entire ORF and 43 nt of 5′ and 3′UTRs]

Stage

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Location (click to highlight)

Comments (click to highlight)

25-30

stage 28

stage 30

Feathers/Scutae

31-36

stage 34

stage 36

Feathers/Scutae

Entry 3

GEISHA Id	EDAR.Houghton.2005	Data Source	Publication
Complete cDNA Template Probe	show GTAAAATATCAAGAGAACATGGCTCACCTGGGTGAATGTAAATGGACTCATGTGTTCCCTTTTCTGGTGGTTTCCTTGG TGTACTCTGCCAGCGCTGAATACTCCAACTGCGGTGAGAACGAATACTACAACCAAACCACTGGCATGTGCCACGACTG CCCCAAATGTGAGCCGGGTGAAGAGCCGTACATGACATGTGGGTATGGCACCAAAGATGAGGACTATGGCTGCATTCCC TGCCCATCAGAGAAGTTTTCCAGAGGAGGTTACCAGATATGCAGGAGGCACAAGGACTGCGAGGGATTCTTTCGAGCCA CTGTCCTGACACCAGGCGATCAAGAGAACGATGCAGAGTGCGGGCCTTGTCTCCCAGGTTACTACATGCTGGAAAACAG ACCTCGAAACATATACGGAATGGTTTGCTACTCATGCTTGTTGGCACCTCCTAACACCAAAGAATGTGCAGGGGCTACC TCTGGCATTTCAGCCATTTTCCCGAGCACGTCTGGCACAAGTACTTTCTCACCTTACCAGCATGCTCACAAAGCAGACC TTTCAGGACAAGGACATCTGGCTACAGCTCTGATAATTGCAATGTCTACCATATTCATAATGGCTATTGCCATTGTCCT CATCATCATGTTTTACATTGTGAAAACCAAACCTTCTGCTCAAGCCTGTTGCAAGAGTCACTCAGTAAAAAATGTCGAA GCTCAGGCTAATACTCAAGAAGAGAAGAAAGAAGTACAAGATAATGTTGTGATATTCTCTGAGAAAGAAGAGTTTGAAA AACTTACAGCAACTCCAGCTAAGGCTGCTAAAAGTGAAAACGATGCATCTTCTGAGAATGAACGACTTCTAAGTCGTAG CATGGATAGTGATGAAGAAGCTGCAGTTGACAAGCAAGGGACACCAGAGAGATGCTTGTTATCATTAGTGCATTTGGCC AGAGATAAATCTTCCACAAGCAATAAATCAACTGGGATTCAAAGTCGAAGAAAGAAGATACTTGATGTGTACGCTAACG TGTGCGACGTTGCAGAAGGCCTGAGCCCTACGGAGCTGCCTTTTGACTGTCTGGAGAAGACCAGCCGAATGCTCAGTTC AACATACAATACTGAGAAGGCCATAGTGAAAACGTGGCGTCACCTTGCTGAGAGCTTTGGGCTGAAGAGGGACGAAATT GGTGGCATGACAGATGGCATGCAGCTGTTTGACCGCATCAGCACAGCGGGCTACAGCATCCCGGAACTGCTCACCAAAC TGGTACAAATCGAGCGGTTGGATGCTGTCGAGTCTCTGTGTGCAGATATTCTGGAGTGGGCACAAGCAATGCCTGCTCC TGAACCAGCAGTGACGTCCTGA
Citation	Houghton L, Lindon C, Morgan BA. The ectodysplasin pathway in feather tract development. Development. 2005 Mar;132(5):863-72. Epub 2005 Jan 26.
Copyright	copyright is held by the authors. Published by the Company of Biologists Ltd.
Comments	The probe was amplified by PCR using the following primers: 5′-CTICCIGGITAC/TTAC/TATG-3′ and 5′-C/TTGCATICCA/GTCIGTCAT-3′ and was extracted from NCBI Acc# NM_001012611.1.