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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HS6ST3
heparan sulfate 6-O-sulfotransferase 3

Gene

Official Symbol	HS6ST3
Official Full Name	heparan sulfate 6-O-sulfotransferase 3
CGNC ID	53245
also known as	heparan-sulfate 6-O-sulfotransferase 3
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003640546
Polypeptide	XP_003640594
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428025
Ensembl Gene
KEGG	gga:428025

Entry 1

GEISHA Id	HS6ST3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GTTCTTTTCTGTAAACCCGCAGTC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGGATAAGCAGCAATAACACCGTTGG	cDNA Template Length	1072
Forward cDNA Template Probe	show `AAAAAGAANCAGCAGGCATTGGAAAACAACATTTGGGAAATAAGGGGATAAATTTTCAAACTTGACTTCTTTTCCTGCA GCACATTTAACTTTTAATGAGTGGCTAAAAACTTCAATTCTGAAAATAAGTGAGAAATGTGCATCCACATCAGGTACTC CACTATCTCTAATTAGTAAATGTGTAAGGTAAAAGCCATTCATGCATGCAATAATATACTTTCAGCATCTCGATTTAGC AGCCACGTTGAGGCACTTAGAGAAATTTCCTCCTAATGCTTTAGATTTATGCTAGAAGAAGGAGGAAAA`

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 11

Sinus Venosus
Unlabeled
Ventricles

13-18

stage 14

stage 16

stage 18

Dermomyotome
Ear/Otic Placode
Forebrain
Foregut
Heart
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Sinus Venosus

19-24

stage 22

stage 23

Sinus Venosus
Spinal Cord
Spinal Ganglia and Nerves
Ventricles

25-27

stage 27

Atria
Endocardium
Foregut
Leg Mesenchyme
Outflow Tract
Spinal Cord
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	HS6ST3.Anderson.2021	Data Source	Direct Submission
Complete cDNA Template Probe	show TGCGCATGCTGGCAGATCTCAGCCTGGTGGGATGCTACAACTTGACTTTTATGAACGAGACTGAGAGAAACGTGATTCT TCTCCAAAGCGCCAAGAACAATCTGAAAAATATGGCCTTCTTTGGGCTGACAGAATTTCAGAGGAAAACACAGTATCTC TTTGAGAGGACATTCAACCTGAAATTCATTTCCCCATTCACCCAGTTCAACGTCACACGGGCCTCCAATGTGGACATCG GTGAGGATGTGCGGCGACGGATAGAGGAGCTGAACTTCTTAGACGTGCAGCTTTACGACTACGCCAAGGACCTGTTCTT GCAGCGCTTCCAGTACTCCAAGCAAGAGGAACATCAGCTGAACCGCCTAAAGAGGCGAGAGGAGCGGAGGCTGCTGCGG GAGCAGAGAGCTCACCAGTGGCCAAGGGAAGAGGCAGCAGAAGTAGCTGTTACTGAAGATTATAATAGCCAGGTTGCAC GGTGGTAACGCTCCTCCATCTTGTCTAACCCATGGGAGGATCAGAGAGGCTGATTCTTTGTGCAGCTCGGCTGCCTGGA AGTCAGCCAAGGAAGGCCAATCACCATAGTGAATGATACAGCATCTGACAGCTAACCTTCCTTGTATCAGTTTTTCTTG CTTTCTGTCAGTAAGAAGAATATATTTTTTTTCTCCGTGTACATTCATTGGTGTTATTAATAGCAGTAGAAGAGATTCC TATCCAAACAGACTTCCTTCCAAACCCTAAGCTGTGAGAATGGGTTGAAGAGAGAGCTGTGTCTATGACATTAACAGAC GTACCCTCTACAATCTGAGCTACCAAAACTTGTGCAGACATGAATCAAAATTGAAAAAAAAAAAAAAAAAGTTTTGATG CCTC
Comments	Images and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST935c22. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Ear/Otic Placode
Forebrain
Foregut
Head Mesenchyme
Heart
Hindbrain
Intermediate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Somites

stage 13

Forebrain
Foregut
Head Mesenchyme
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Somites

Entry 3

GEISHA Id	HS6ST3.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show TCTGCGCATGCTGGCAGATCTCAGCCTGGTGGGATGCTACAACTTGACTTTTATGAACGAGACTGAGAGAAACGTGATT CTTCTCCAAAGCGCCAAGAACAATCTGAAAAATATGGCCTTCTTTGGGCTGACAGAATTTCAGAGGAAAACACAGTATC TCTTTGAGAGGACATTCAACCTGAAATTCATTTCCCCATTCACCCAGTTCAACGTCACACGGGCCTCCAATGTGGACAT CGGTGAGGATGTGCGGCGACGGATAGAGGAGCTGAACTTCTTAGACGTGCAGCTTTACGACTACGCCAAGGACCTGTTC TTGCAGCGCTTCCAGTACTCCAAGCAAGAGGAACATCAGCTGAACCGCCTAAAGAGGCGAGAGGAGCGGAGGCTGCTGC GGGAGCAGAGAGCTCACCAGTGGCCAAGGGAAGAGGCAGCAGAAGTAGCTGTTACTGAAGATTATAATAGCCAGGTTGC ACGGTGGTAACGCTCCTCCATCTTGTCTAACCCATGGGAGGATCAGAGAGGCTGATTCTTTGTGCAGCTCGGCTGCCTG GAAGTCAGCCAAGGAAGGCCAATCACCATAGTGAATGATACAGCATCTGACAGCTAACCTTCCTTGTATCAGTTTTTCT TGCTTTCTGGTCAGTAAGAAGAATATATTTTTTTCTCCGGTGTACATTCATTGGTGTTATTAATAGCAGTAGAAGAGAT TCCTATCCAAACAGACTTCCCTTCAAACCCTAAGCTGTGAGAATGGGTTTGAAGAGAGAGCTTGGGTCTATGACN
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.