GEISHA - A Chicken Embryo Gene Expression Database
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KDM5B
lysine demethylase 5B

Gene
Official SymbolKDM5B
Official Full Namelysine demethylase 5B
CGNC ID51429
also known asJARID1B, lysine-specific demethylase 5B|Jumonji, AT rich interactive domain 1B (RBP2-like)|histone demethylase JARID1B|jumonji/ARID domain-containing protein 1B|lysine (K)-specific demethylase 5B
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001031029
PolypeptideNP_001026200
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.7752
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human10765ENSG00000117139MIM:605393
Mouse75605ENSMUSG00000042207All phenotypic alleles (1):Targeted, other(1) MGI:1922855
Xenopus100488170856239
Zebrafish415256, 327168ENSDARG00000003098, ENSDARG00000057093ZDB-GENE-030424-1, ZDB-GENE-030131-5379ZFIN:ZDB-GENE-030424-1, ZFIN:ZDB-GENE-030131-5379
Gene Ontology
Molecular FunctionDNA binding, histone demethylase activity (H3-dimethyl-K4 specific), more...histone demethylase activity (H3-trimethyl-K4 specific), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, zinc ion binding
Biological Processhistone H3-K4 demethylation, histone H3-K4 demethylation, trimethyl-H3-K4-specific, more...regulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene421168
Ensembl Gene
KEGGgga:421168
GEISHA IdKDM5B.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAGGATCCAGCGGCTCAATG
Reverse cDNA Template PrimerTATCTGCGGTGATGTGGGCcDNA Template Length1171
Complete cDNA Template Probeshow
AGGATCCAGCGGCTCAATGAGTTGGAGGCCCAAACCCGCGTGAAGCTGAATTTCCTGGACCAGATTGCGAAGTTCTGGG
AGCTTCAGGGCTGCACGCTGAAAATTCCACACGTGGAGAGGAAGATCCTGGATTTATTTCAGCTTAACAGGCTGGTTGC
AGAGGAAGGAGGGTTTGATGTCGTTTGCAAGGAGAGGAAATGGACCAAAATCGCCACGAGGATGGGCTTTGCTCCTGGC
AAGGCTGTGGGTTCGCACATCCGCGCGCATTACGAGCGAATTCTCTATCCTTACAACTTGTTCCAGTCCGGAGCGAGCC
TGCTGTGTCTGCAGAAGCCGGATCTCACCAGCGACACGAAGGACAAGGAGTACAAACCCCACGACATCCCGCAGAGGCA
GTCGGTGCAGCCGTCCGAGAGCTGCCCTCCCGCGCGCCGAGCGAAGCGCCTGCGGGCCGAGGCAACCAACATTAAAACC
GAATCCGATTCTCCAGAGGTGAGAACGCACAACCTGAGACGCAGGATGGGCTGCGCACCTCCCAAGTGTGAGAACGAAA
AGGAAACGTACAGCGCAGTGAAGCTTGCAGAGAAGAGAGAGCACGCTGGGGAGCAGGAGAGGGACAAAGCCAAAGCCCG
ATCCAAAAAGCCCACCAGTGCTGTGGATTTGTATGTGTGTCTCTTATGTGGCAGTGGTAACGACGAGGACCGTCTCCTG
TTGTGTGATGGCTGTGATGACAGTTACCATACTTTCTGTTTAATTCCACCCCTTCACGATGTTCCCAAAGGGGACTGGA
GGTGCCCCCAGTGTTTGGCTCAGGAGTGCAATAAGCCTCAGGAAGCGTTTGGCTTTGAGCAGGCAGCTCGGGACTACAC
GCTGCGCACCTTCGGGGAGATGGCAGACGCCTTCAAGTCCGACTACTTCAACATGCCAGTCCACATGGTCCCCACTGAG
CTGGTCGAGAAGGAGTTCTGGAGACTCGTTAGCACCATTGAGGAGGACGTCACCGTGGAATACGGAGCTGATATCGCTT
CAAAGGAGTTTGGCAGTGGGTTCCCGGTTAGAGATGGGAAGTTCAAAGTGAGACCAGAGGAGGAGGAGTACCTCGATAG
TGGCTGGAATCTAAACAACATGCCTGTGATGGAGCAGTCTGTTCTTGCCCACATCACCGCAGATAT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Epiblast
 
4-6
stage 5
Area Opaca
Epiblast
Primitive Streak
 
7-12
stage 10
Anterior Intestinal Portal
Forebrain
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Primitive Streak
Somites
extraembryonic mesoderm
 
13-18
stage 14
stage 17
Blood Islands
Blood Vessels
Ear/Otic Placode
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Leg Mesenchyme
Midbrain
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Somites
Ventricles
Wing Mesenchyme
 
19-24
stage 19
stage 24
stage 24
stage 24
Foregut
Head Mesenchyme
Leg Mesenchyme
Lung
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme
 
25-26
stage 26
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Lung
Mesonephros
Midbrain
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.7752

Mouse

EmageMGI:1922855
EurexpressMGI:1922855
MGI GXDMGI:1922855

Frog

Xenbase856239

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030424-1, ZDB-GENE-030131-5379
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