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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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TLE3
transducin like enhancer of split 3

Gene

Official Symbol	TLE3
Official Full Name	transducin like enhancer of split 3
CGNC ID	6155
also known as	transducin-like enhancer protein 3\|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003641829
Polypeptide	XP_003641877
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.53242

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	415568
Ensembl Gene
KEGG	gga:415568

Entry 1

GEISHA Id	pgn1c.pk019.j5	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCCCACTCCCCACCAGAGAATGGCCTGGACAAAGCCCGTGGGCTGAAGAAGGGGGATGCACCCAACAGCCCGGCCTCGG TCGCCTCCTCCAGCAGCACTCCCTCCTCCAAGACTAAAGACTTGGGCCACAACGACAAATCATCAACGCCCGGACTCAA GTCCAACACTCCCACACCGAGGAACGATGCCCCAACCCCAGGGACGAGCAGCACCCCGGGGCTGAGGCCGATGCCCGGC AAGCCAAGCGGCATGGACCCACTGGCCTCAGCCCTGCGGACACCCATCTCCATCGCGGGTTCCTACGCAGCCCCGTTTG CCATGATGGGGCACCACGAGATGAACGGCTCTCTGACCAGCCCTGGTGCCTATGCTGGCCTGCACAACATCCCCCCGCA GATGAGTGCTGCCGCCGCCGCCGCTGCTGCCTATGGCCGGTCGCCAATGGTTGGCTTTGACCCACACCCACCCATGCGG GCCCCTGGCCTGCCCACCAGCCTGGCATCCATCCCTGGAGGGAAGCCAGCTTACTCGTTTCACGTCAGTGCTGATGGGC AGATGCAGCCGGTCCCCTTTCCCCACGACGCCCTGGCTGGCCCCGGCATCCCCCGGCACGCGCGGCAGATCAACACGCT GAGCCACGGTGAGGTGGTGTGCGCCGTCACCATCAACAACCCCACCCGGCACGTGTACACAGGTGGAAAAGGCTGTGTG

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 12

Forebrain
Lateral Plate Mesoderm
Neural Plate/Tube

13-18

stage 15

Forebrain
Hindbrain
Lateral Plate Mesoderm
Midbrain
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Spinal Ganglia and Nerves

19-22

stage 21

stage 22

Eye
Forebrain
Hindbrain
Lateral Plate Mesoderm
Limb Buds
Midbrain
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Cord

Entry 2

GEISHA Id	GRG2.VanHateren.2005	Data Source	Publication
Complete cDNA Template Probe	show CAGTCCAGCCTCCGTGGCGTCATCCAGCACGCGTCCCCATCGCGCACAAGGATGCGCCCACGGTGGAGAAGGCGGGGAC ACCAGCCTCAAGTCCAGCACCCCCACATCTCAGGGCGATGCCGTAGCCCCGGGATCCAGCAGTGCCCCACAGTTCCGCC CCTATTGCCGCCAAAGCCCCCGTGGACTCCCTGGTCCTGCCTGCTGTTCAACAAGGGACAATGGCCGGGGCGGGTGCTT ACGCCAGCCTGCACCTCGTGTCCCCGCAAGCTCAAACGGCACCGCGGCTGCCGGCAGCTACGGGCGGTCCCCGCTGGTT GGCTACGACCCTCACCCACACATGCGCGTGGCGGGGCTGGCGGCCGGTATGCAAGTGGGGACGTCGGGGAAACCCGCCT ACTCCTTCCATGTCAGTGCCGACGGGCAGATGCAGCCGGTGCCGTTCCCCCCTGACGCCCTCCTGGGCTCTGGCATCCC CCGGCACGCGCGGCAGCTGCACAGCCTGGCCCACGGCGAGGTGGTCTGCGCCGTCACCATCAGCAACTCCACGCGCCAC GTCTACACCGGGGGCAAAGGCTGCGTCAAGGTGTGGGACGTGGGGCAGCCGGGCACCAAGACGGCCGTGGCACAGCTGG ACTGCTTGAACCGCGACAACTACATCCGCTCCTGCAAGCTGCTCCCCGACGGCCGCAGCCTAATCGTGGGGGGGAGGCC AGCACTCTTGTCCATTTGGGACCTGGCCGCCCC
Citation	Van Hateren N, Belsham A, Randall V, Borycki AG. Expression of avian Groucho-related genes (Grgs) during embryonic development. Gene Expr Patterns. 2005 Aug;5(6):817-23.
Copyright	Copyright © 2005 Elsevier B.V. All rights reserved.
Comments	According to the authors, "RT-PCR was used to amplify cDNA fragments of 744 bp for Grg2 from HH stage 12 quail embryo mRNA. Primers used are the following: Grg2 forward 5′-CAAGAAGCACCAYGATGCAGAGC-3′, reverse 5′-GGNGCNGCCAGGTCCCAAATG-3′. Sequences were submitted to GenBank with the following accession number: AY834283. Sequence shown is Quail. Map shown is from chick.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Hensen's Node
Primitive Streak

Quail

4-6

stage 4

Head Process
Hensen's Node
Primitive Streak

Quail

7-12

stage 7

stage 8

stage 11

Dermomyotome
Forebrain
Head Process
Hindbrain
Midbrain
Myotome
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Primitive Streak
Somites

Figure 2 includes HH stages 3, 4 and 7 and compares Grg1-5 gene expressions during gastrulation and neurulation.
Quail
Roof Plate
Ventricular Zone

13-18

stage 14

Forebrain
Hindbrain
Midbrain
Paraxial Mesoderm
Widespread Expression

Quail

19-24

stage 20

stage 22

stage 24

Limb Buds
Myotome
Spinal Ganglia and Nerves
Wing
Wing Mesenchyme
Wing Muscles

DRG
Dorsal Muscle Masses
Figure 3 includes HH stages 8, 11, 14, and 20 and compares Grg gene expressions during somitogenesis.
Figure 4 include HH stages 20 and 24 and compares Grg1-5 gene expressions in the fore-limb bud.
Quail
Ventral Muscle Masses

Entry 3

GEISHA Id	GRG3.VanHateren.2005	Data Source	Publication
Complete cDNA Template Probe	show `CTCCATCGCGGGTTCCTACGCAGCCCCATTTGCCATGATGGGGCACCATGAGATGAATGGCTCTCTGACCAGCCCCGGT GCCTATGCTGGCCTGCACAACATCCCCCCACAGATGAGTGCTGCAGCCGCCGCCGCCGCTGCCTATGGCCGGTCGCCAA TGGTGAGCTTTGGAGCTGTTGGCTTTGACCCACACCCACCCATGCGGGCCCCTGGGCTGCCCACCAGCCTGGCATCCAT CCCTGGAGGGAAGCCAGCTTACTCGTTTCATGTCAGCGCTGATGGGCAGATGCAGCCGGTCCCCTTTCCCCACAACGCC GTGGATGGTCCCGGTATCCCCCGGCACGCGCGGCAGATCAACACGCTGAGCCATGGTAAGGTGGTGTGTGCTGTTACCA TCAGCAACCC`
Citation	Van Hateren N, Belsham A, Randall V, Borycki AG. Expression of avian Groucho-related genes (Grgs) during embryonic development. Gene Expr Patterns. 2005 Aug;5(6):817-23.
Copyright	Copyright © 2005 Elsevier B.V. All rights reserved.
Comments	According to the authors, "RT-PCR was used to amplify cDNA fragments of 405 bp for Grg3 from HH stage 12 quail embryo mRNA. Primers used are the following: Grg3 forward 5′-CTCCATCGCGGGTTCCTACG-3′ reverse 5′-GGGTTGCTGATGGTMACMGC-3′. Sequences were submitted to GenBank with the following accession number: AY834284. Sequence shown is quail. Map shown is best match in chick.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida
Primitive Streak

Junctional Endoblast
Quail

4-6

stage 4

Primitive Streak

Posterior Blastoderm
Quail

7-12

stage 7

stage 8

stage 11

Dermatome
Forebrain
Head Process
Hindbrain
Midbrain
Myotome
Neural Plate/Tube
Primitive Streak
Somites

Figure 2 includes HH stages 3, 4 and 7 and compares Grg1-5 gene expressions during gastrulation and neurulation.
Head Fold
Posterior Blastoderm
Quail
Ventral Ventricular Zone

13-18

stage 14

Forebrain
Hindbrain
Midbrain
Paraxial Mesoderm
Somites

Quail

19-24

stage 20

stage 22

stage 24

Dermomyotome
Limb Buds
Neural Plate/Tube
Wing
Wing Mesenchyme
Wing Muscles

Dorsal and Ventral Muscle Masses
Figure 3 includes HH stages 8, 11, 14, and 20 and compares Grg gene expressions during somitogenesis.
Figure 4 include HH stages 20 and 24 and compares Grg1-5 gene expressions in the fore-limb bud.
Posterior
Quail

Entry 4

GEISHA Id	Grg3.Houghton.2003	Data Source	Publication
Complete cDNA Template Probe	show GGTGGGCGGGGGGGACGACGCACCGTCCTCTTTCCCCCCCCCCCTCCCCGGACCCCCTCCCCCCTCCGCTCTTTGTTCC GCCGCCGGCCCCCCCCGGCCATGTACCCGCAGGGTCGGCACCCGGCCCCCCACCAGCCGGGCCAACCGGGCTTCAAATT CACCGTGGCCGAATCGTGCGATCGGATCAAGGACGAGTTTCAGTTCCTGCAGGCGCAGTACCACAGCCTGAAAGTGGAG TACGACAAGCTGGCCAACGAGAAGACCGAGATGCAGCGCCATTACGTGATGTACTACGAAATGTCCTACGGGCTCAACA TCGAGATGCACAAACAGACAGAAATTGCTAAAAGGCTGAATACCATTTTAGCACAGATTATGCCTTTTCTGTCACAAGA GCACCAACAGCAAGTTGCACAGGCTGTTGAACGTGCCAAGCAAGTGACAATGACGGAGTTGAATGCTATCATCGGGGTA CGTGGACTTCCCAATCTGCCTCTCACCCAGCAGCAGCTCCAGGCGCAGCACCTCTCCCACGCCGCCCATGGGCCCCCGG TCCAGCTGCCTCCGCACCCCTCCGGCCTGCAGCCCCCCGGCATCCCACCCGTCACCGGCAGCAGTTCGGGGCTGCTGGC GCTCGGTGCGTTGGGCAGCCAGGCACACCTGGCCGTCAAGGATGAGAAGAACCACCACGACCTGGACCACAGAGAGCGG GACTCGAGCGCGAATAACTCCGTTTCGCCCTCGGAAAGCCTGAGAGCCAGTGAGAAGCACCGGAGCTCCACAGACTACA GCATTGACTCCAAAAAGCGGAAAGCAGAGGAGAAGGACAGCATGAGCCGATATGACAGCGATGGTGACAAAAGCGATGA CCTCGTCGTTGATGTCTCCAACGAGGACCCCGCCACCCCCCGGGTCAGCCCGGCCCACTCCCCACCAGAGAATGGCCTG GACAAAGCCCGTGGGCTGAAGAAGGGGGATGCACCCAACAGCCCGGCCTCGGTCGCCTCCTCCAGCAGCACTCCCTCCT CCAAGACTAAAGACTTGGGCCACGTATGTGCCATGCTGTGCCCTGCCACAGGGCTCTCCAAAACCCCCCTGGCAGCTGG ACTTCACTCTTTACATTTTATTTTTTTGGTTTTTTTCTGCATCCAGAACGACAAATCATCAACGCCCGGACTCAAGTCC AACACTCCCACACCGAGGAACGATGCCCCAACCCCAGGGACGAGCAGCACCCCGGGGCTGAGGCCGATGCCCGGCAAGC CAAGCGGCATGGACCCACTGGCCTCAGCCCTGCGGACACCCATCTCCATCGCGGGTTCCTACGCAGCCCCGTTTGCCAT GATGGGGCACCACGAGATGAACGGCTCTCTGACCAGCCCTGGTGCCTATGCTGGCCTGCACAACATCCCCCCGCAGATG AGTGCTGCCGCCGCCGCCGCTGCTGCCTATGGCCGGTCGCCAATGGTTGGCTTTGACCCACACCCACCCATGCGGGCCC CTGGCCTGCCCACCAGCCTGGCATCCATCCCTGGAGGGAAGCCAGCTTACTCGTTTCACGTCAGTGCTGATGGGCAGAT GCAGCCGGTCCCCTTTCCCCACGACGCCCTGGCTGGCCCCGGCATCCCCCGGCACGCGCGGCAGATCAACACGCTGAGC CATGGTGAGGTGGTGTGCGCCGTCACCATCAGCAACCCCACCCGGCACGTGTACACAGGTGGAAAAGGCTGTGTGAAGA TCTGGGACATCAGCCAGCCTGGCAGCAAGAGCCCCATCTCTCAGCTGGACTGCCTGAACAGGGATAACTACATCCGCTC CTGCAAGCTGCTCCCCGACGGCCGCACGCTGATCGTTGGGGGGGAGGCCAGCACGCTCACCATCTGGGACCTGGCCTCC CCCACGCCCCGCATCAAGGCTGAGCTCACCTCCTCGGCGCCCGCCTGCTACGCGTTGGCCATCAGCCCCGACGCCAAAG TCTGCTTCTCCTGCTGCAGCGACGGCAACATCGCCGTGTGGGACCTGCACAACCAGACCCTGGTCAGGCAATTCCAAGG CCACACAGACGGTGCCAGCTGCATAGACATCTCACACGATGGTACGAAGCTGTGGACGGGGGGGCTGGACAACACGGTG CGCTCCTGGGACCTGCGGGAAGGGCGGCAGCTGCAGCAGCACGACTTCACCTCCCAGATCTTCTCGCTGGGGTACTGCC CCACGGGAGAGTGGCTGGCGGTGGGCATGGAGAGCAGCAACGTGGAAGTGCTGCACCACACCAAGCCGGACAAGTACCA GCTGCACCTGCACGAGAGCTGCGTCCTGTCCCTCAAGTTCGCCTACTGCGGTAAATGGTTCGTGAGCACGGGGAAGGAC AACCTGCTCAACGCATGGAGGACGCCCTACGGGGCAAGCATCTTCCAGTCCAAGGAATCCTCGTCGGTCTTAAGCTGCG ACATTTCAGCGGATGACAAATACATCGTCACGGGCTCTGGGGACAAGAAGGCCACAGTCTACGAGGTCATCTACTGAGG GGACGCAGTGGCGGTGCCGCAGGCTCGGCGCTGGAGCGGCGCTCGGGGCAGCACTGGGCTGGGATCTCTCGCTGGAGCT GCACCTCCGTGCCCGCCCGGCACCCACACGGATGTACCTGGAGGTCTGCAGACATGGCACACACACACACGTCGGAGCC CTGAACGAATTCTTGGTTTGGTTTTAGGGTTTGGGGCTGTTGGTTTTTTTTTTTTTCCCCATTTTTTTGGTCTTTTTTT TTTTTTGGTCTCCCGGTTCTCTCCGTCTGCGCTTTGGTGGCACTCTAAAGGACTTCTTTTTTTTACCGTGACTTCTTTT TTTTTTTCCTTTTGGTGCATCCCACATTAAGACTTGTGAAAAATGTAAATACCGGACTAGTACATAGCATGGGAAGGGT GGGGGACCCTCCCGGTACACTAGGTGTGTATTTTCGTCTGCTGTAATTGTATTCCACTGATGGTTTTGGTGGTGGCAAT TTTTCTTATTATTTTTCCCCCCTCCCCGCTCCCCCCCTTCCCCCCCCCCCTCTCCCAATGCATCTATTTGGGATGCAAC CTGGACTGAGCAAAGCGTCCTCTTGGTGAAGTCGTCCCTCCCGTCGTCCCCGTGCGTTGGTGGCTGTTGTGTGTGCGGA CGCTGTCGGGGCTGTGCTGAGCTCTGTCGGATCCCCGGCTGCTGCCGGACGTCGGCGACACAATCACCTTTTTTTATAT GGATTTTTTTTTGTTGTGCTCGTATGTTTGAAGAGAAAAGGGGAAGCCCACGATCCGGGAATCATCCGCTCGAACCCTT CTTGGTCTTCGGACATAAAGCAACGAGGAGTGATTTCAAAGAAAGCATAGTAAAATTCAGCTCAGGGAGCCACGAAAGA TAATAGCAACTTAATGTGTTTTGTATTCAAATGAAAGTAAAGAATTAGAATTGATAACCTTTAAAATACAGTTTTTTTA AAGCAAAGCTGACTAACAAGTAGGGTTTGTGTGTGGTGGGGGGACGGGGCTTGGGTAGGGTCCTGTGGCTGTATGGGCC CGTGTCTGCTGGGCTGTAGGTCCCAATGGAGCAACCCCCCATATCCCTGCACAGGCCTGCGGTGCAGCGTTTTGTACTA AAGGGGTTAAAAAAGGACAAGAAAACGGGAAATAAAAGTATTTGTGTAGCGGAAGCGCTCACCCTGTATTGTAGCACAC GGAAGAGGATTTTGATACTACGTTTTTTATGGATTATTTTTTTTAATTGTTGTTTCCCCCCCCCTCCCCCCTATTGTAA CCCAGTGGAGGACTGAGGAGGGTGATGGTGAGGATGTGGGCACCGCTGCGGCCAGCAGGGAGATGCAGTGGGGCAGAGA GGAGCTGTGGTGGGAAATGGCCTCTCCCCCTCAGGTCGGTGCTTCTGAGCTTTTTTGGCCTTTTACTGTGCAAAACCCA AGGGAAGAACCCAGGCTGATGGTGGCTGCCCTGCGTGGCTCCTTGGTGCGAGCCCGGATTGAGGAGCTGGGATTGATCT GTGCGCTCATTACCCAAGGAGGAAAGGGGAGAAATGCTTTTTATGACTGCAGCAGAGGGACGGTTTGAAGGGGGGTCGG GCTGAGCTAAAGGACTGCACAGCCCCATCCTGCAGCTCTGTGTGCTGTGCTGCCGCCCTGCAGGGCTGCACCCACGGCC CTATGGAGCATCCTCTGCTCTGCGGCACTGGAAGGGCTCGGAGCACCCCAGGGCTGTGCCTCCAGGCTGGGCTCTGCCT GCGTTGGTGCTTTGTTTTCCTCCAACCCCCCCTCTGTGGAACTGTGCATAGCGGAGCTGGCAGCGGGGCGCTGAGTCGG ACCTCTCCACTTGACACCAAAGTATGTAGCAAACCTGTACAGCTGTTAATAACTACAACTGGCTTTTGTATAAAAGGGG AGAGAGAGAGAAAAAAAAAA
Citation	Houghton L, Freeman A, Morgan BA. Expression and regulation of Groucho-related genes in the embryonic chicken feather bud. Dev Dyn. 2003 Apr;226(4):587-95.
Copyright	Copyright © 2003 Wiley‐Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_025153951.1). Grg3 is also known as TLE3 in NCBI.

no images

Entry 5

GEISHA Id	Tle3.Zwane.2015	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show `GTTTTAGGGTTTGGGGCTGTTGGTTTTTTTTTTTTTCCCCATTTTTTTGGTCTTTTTTTTTTTTTGGTCTCCCGGTTCT CTCCGTCTGCGCTTTGGTGGCACTCTAAAGGACTTCTTTTTTTTACCGTGACTTCTTTTTTTTTTTCCTTTTGGTGCAT CCCACATTAAGACTTGTGAAAAATGTAAATACCGGACTAGTACATAGCATGGGAAGGGTGGGGGACCCTCCCGGTACAC TAGGTGTGTATTTTCGTCTGCTGTAATTGTATTCCACTGATGGTTTTGGTGGTGGCAATTTTTCTTATTATTTTTCCCC CCTCCCCGCTCCCCCCCTTCCCCCCCCCCCTCTCCCAATGCATCTATTTGGGATGCAACCTGGACTGAGCAAAGCGTCC TCTTGGTGAAGTCGTCC`
Citation	Zwane TB, Nikitina NV. Spatiotemporal expression analysis of Prdm1 and Prdm1 binding partners in early chick embryo. Gene Expr Patterns. 2015 Jan;17(1):56-68. Epub 2015 Feb 17. DOI: 10.1016/j.gep.2014.12.003.
Copyright	Copyright © 2014 Elsevier B.V.
Comments	Authors indicated the probe for Tle3 was amplified by PCR using the following primers: 5'-GTTTTAGGGTTTGGGGCTGT-3' and 5'-GGACGACTTCACCAAGAGGA-3'. Above sequence was extracted from NCBI accession number XM_025153951.1.