GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

ACTB
actin, beta

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolACTB
Official Full Nameactin, beta
CGNC ID49855
also known asBact, actin, actin, cytoplasmic 1|Bact; actin|beta-actin|cytoplasmic 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205518
PolypeptideNP_990849
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.48207
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly41885FBgn0000047
Human60ENSG00000075624MIM:607371MIM:102630
Mouse11461ENSMUSG00000029580All phenotypic alleles (12):Targeted, knock-out(2) Targeted, other(10) MGI:87904
Xenopus407952, 398459490882
Zebrafish57934, 57935ENSDARG00000037746, ENSDARG00000037870ZDB-GENE-000329-1, ZDB-GENE-000329-3ZFIN:ZDB-GENE-000329-1, ZFIN:ZDB-GENE-000329-3
Gene Ontology
Molecular FunctionATP binding, kinesin binding, nitric-oxide synthase binding, Tat protein binding
Biological Process
Cellular Componentcytoplasm, cytoskeleton, extracellular vesicular exosome, MLL5-L complex, more...NuA4 histone acetyltransferase complex, ribonucleoprotein complex
Links to other databases
Entrez Gene396526
Ensembl GeneENSGALG00000009621
KEGGgga:396526

Entry 1

GEISHA IdACTBcyto.Ruzicka.1988Data SourcePublication
Complete cDNA Template Probeshow
GGAACAACNNGGCCGCCTCGCGCCGCCCGCCCCGGCTCTGACTGACCGCGTTACTCCCACAGCCAGCCATGGATGATGA
TATTGCTGCGCTCGTTGTTGACAATGGCTCCGGTATGTGCAAGGCCGGTTTCGCCGGGGACGATGCCCCCCGTGCTGTG
TTCCCATCTATCGTGGGTCGCCCCAGACATCAGGGTGTGATGGTTGGTATGGGCCAGAAAGACAGCTACGTTGGTGATG
AAGCCCAGAGCAAAAGAGGTATCCTGACCCTGAAGTACCCCATTGAACACGGTATTGTCACCAACTGGGATGATATGGA
GAAGATCTGGCACCACACTTTCTACAATGAGCTGAGAGTAGCCCCTGAGGAGCACCCTGTGCTGCTCACAGAGGCTCCC
CTGAACCCCAAAGCCAACAGAGAGAAGATGACACAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTATGTAGCCA
TCCAGGCTGTGCTGTCCCTGTATGCCTCTGGTCGTACCACTGGTATTGTGATGGACTCTGGTGATGGTGTTACCCACAC
TGTGCCCATCTATGAAGGCTACGCCCTCCCCCATGCCATCCTCCGTCTGGATCTGGCTGGCCGTGACCTGACGGACTAC
CTCATGAAGATCCTGACAGAGAGAGGCTACAGCTTCACCACCACAGCCGAGAGAGAAATTGTGCGTGACATCAAGGAGA
AGCTGTGCTACGTCGCACTGGATTTCGAGCAGGAGATGGCCACAGCTGCCTCTAGCTCTTCCCTGGAGAAGAGCTATGA
ACTCCCTGATGGTCAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCCGAGGCCCTCTTCCAGCCATCTTTCTTG
GGTATGGAGTCCTGTGGTATCCATGAAACTACCTTCAACTCCATCATGAAGTGTGATGTGGATATCCGTAAGGATCTGT
ATGCCAACACAGTGCTGTCTGGTGGTACCACAATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCT
GGCACCTAGCACAATGAAAATCAAGATCATTGCCCCACCTGAGCGCAAGTACTCTGTCTGGATTGGAGGCTCTATCCTG
GCCTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGATGAATCCGGACCCTCCATTGTCCACCGCA
AATGCTTCTAAACCGGACTGTTACCAACACCCACACCCCTGTGATGAAACAAAACCCATAAATGCGCATAAAACAAGAC
GAGATTGGCATGGCTTTATTTGTTTTTTCTTTTGGCGCTTGACTCAGGATTAAAAAACTGGAATGGTGAAGGTGTCAGC
AGCAGTCTTAAAATGAAACATGTTGGAGCGAACGCCCCCAAAGTTCTACAATGCATCTGAGGACTTTGATTGTACATTT
GTTTCTTTTTTAATAGTCATTCCAAATATTGTTATAATGCATTGTTACAGGAAGTTACTCGCCTCTGTGAAGGCAACAG
CCCAGCTGGGAGGAGCCGGTACCAATTACTGGTGTTAGATGATAATTGCTTGTCTGTAAATTATGTAACCCAACAAGTG
TCTTTTTGTATCTTCCGCCTTAAAAACAAAACACACTTGATCCTTTTTGGTTTGTCAAGCAAGCGGGCTGTGTTCCCCA
GTGATAGATGTGAATGAAGGCTTTACAGTCCCCCACAGTCTAGGAGTAAAGTGCCAGTATGTGGGGGAGGGAGGGGG
CitationRuzicka DL, Schwartz RJ. Sequential activation of alpha-actin genes during avian cardiogenesis: vascular smooth muscle alpha-actin gene transcripts mark the onset of cardiomyocyte differentiation. J Cell Biol. 1988 Dec;107(6 Pt 2):2575-86.
Copyright© The Rockefeller University Press,
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205518.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 5
Ubiquitous
 
7-12
stage 10
  
13
stage 13
stage 13
Ubiquitous
 

Entry 2

GEISHA IdACTB.Lin.2012BData SourcePublication
Complete cDNA Template Probeshow
CGCCCCGGCTCTGACTGACCGCGTTACTCCCACAGCCAGCCATGGATGATGATATTGCTGCGCTCGTTGTTGACAATGG
CTCCGGTATGTGCAAGGCCGGTTTCGCCGGGGACGATGCCCCCCGTGCTGTGTTCCCATCTATCGTGGGTCGCCCCAGA
CATCAGGGTGTGATGGTTGGTATGGGCCAGAAAGACAGCTACGTTGGTGATGAAGCCCAGAGCAAAAGAGGTATCCTGA
CCCTGAAGTACCCCATTGAACACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCACCACACTTTCTACAA
TGAGCTGAGAGTAGCCCCTGAGGAGCACCCTGTGCTGCTCACAGAGGCTCCCCTGAACCCCAAAGCCAACAGAGAGAAG
ATGACACAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTATGTAGCCATCCAGGCTGTGCTGTCCCTGTATGCCT
CTGGTCGTACCACTGGTATTGTGATGGACTCTGGTGATGGTGTTACCCACACTGTGCCCATCTATGAAGGCTACGCCCT
CCCCCATGCCATCCTCCGTCTGGATCTGGCTGGCCGTGACCTGACGGACTACCTCATGAAGATCCTGACAGAGAGAGGC
TACAGCTTCACCACCACAGCCGAGAGAGAAATTGTGCGTGACATCAAGGAGAAGCTGTGCTACGTCGCACTGGATTTCG
AGCAGGAGATGGCCACAGCTGCCTCTAGCTCTTCCCTGGAGAAGAGCTATGAACTCCCTGATGGTCAGGTCATCACCAT
TGGCAATGAGAGGTTCAGGTGCCCCGAGG
CitationLin J, Redies C. Histological evidence: housekeeping genes beta-actin and GAPDH are of limited value for normalization of gene expression. Dev Genes Evol. 2012
Copyright© Springer-Verlag Berlin Heidelberg 2012
CommentsThe cDNA template used to generate the probe was obtained by PCR as described in Lin et al. ACTB (NCBI accession number: NM_205518); the forward primer for ACTB was 5'-CGCCCCGGCTCTGACTGACC-3' and the reverse primer was 5'-CCTCGGGGCACCTGAACCTCTC-3' (expected length 819 bp).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
stage 12
Notochord
Spinal Cord
 
13-18
stage 17
Ubiquitous Embryonic
 
19-24
stage 19
stage 23
stage 23
Notochord
Spinal Cord
Ubiquitous Embryonic
 
25-30
stage 26
stage 29
stage 29
stage 29
Aorta
Heart
Lung
Spinal Cord
Spinal Ganglia and Nerves
Ubiquitous
Crop
31-40
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 34
stage 36
stage 40
Arteries
Blood Vessels
Central Nervous System
Dermis
Feathers/Scutae
Gizzard
Gut
Heart
Liver
Lung
Myotome
Renal
Spinal Cord
Spinal Ganglia and Nerves
Surface Ectoderm
Widespread Expression
me, meninges
tect, tectum
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.48207

Mouse

EmageMGI:87904
EurexpressMGI:87904
MGI GXDMGI:87904

Frog

Xenbase490882

Fruit Fly

BDGPFBgn0000047

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-000329-1, ZDB-GENE-000329-3
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona