Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

CNR1
cannabinoid receptor 1

Gene

Official Symbol	CNR1
Official Full Name	cannabinoid receptor 1
CGNC ID	53418
also known as	cannabinoid receptor 1\|CB1 cannabinoid receptor\|cannabinoid receptor 1 (brain)
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001038652
Polypeptide	NP_001033741
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.42802

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1268	ENSG00000118432		MIM:114610
Mouse	12801	ENSMUSG00000044288	All phenotypic alleles (8):Targeted, knock-out(5) Targeted, other(3)	MGI:104615
Xenopus	100497761, 373759			962200
Zebrafish	404209	ENSDARG00000009020	ZDB-GENE-040312-3	ZFIN:ZDB-GENE-040312-3

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428633
Ensembl Gene
KEGG	gga:428633

Entry 1

GEISHA Id	CB1.Stincic.2008	Data Source	Publication
Complete cDNA Template Probe	show TACCACTTCATCGGCAGCCTAGCTGTGGCCGACCTCCTGGGCAGTGTGATTTTTGCCTACAGTTTTGTGGATTTCCATG TTTTCCACCGGAAGGATAGCCCCAATGTCTTCTTGTTCAAACTGGGTGGAGTTACAGCCTCCTTCACCGCCTCTGTAGG TAGCCTTTTCCTCACGGCAATAGACCGGTACATCTCTATACACAGGCCGCTAGCTTATAAAAGGATTGTTACCCGACCA AAGGCTGTCGTAGCATTTTGTGTGATGTGGACCATCGCTATCGTAATAGCCGTTCTTCCTCTGCTCGGCTGGAACTGCA AAAAGCTCAACTCTGTTTGTTCGGACATATTCCCTCTCATCGATGAGACGTACCTGATGTTCTGGATTGGGGTCACCAG CATCCTCTTGTTGTTCATTGTCTATGCCTACATGTACATTCTGTGGAAGGCTCACAGCCACGCCGTTCGCATGTTGCAG CGAGGCACGCAGAAAAGCATAATCATTCAGTCGACGGAGGATGGTAAGGTACAGATCACTAGACCCGATCAAACTCGTA TGGACATCAGGTTAGCCAAAACCTTGGTCCTTATCCTAGTTGTTCTAATCATATGCTGGGGCCCTCTCCTTGCCATCAT GGTGTACGATGTCTTTGGGAAAATGAACAAGCTCATCAAGACTATCTTTGCCTTTTGCAGTATGCTGTGC
Citation	Stincic TL, Hyson RL. Localization of CB1 cannabinoid receptor mRNA in the brain of the chick (Gallus domesticus). Brain Res. 2008 Dec 15;1245:61-73. Epub 2008 Sep 20.
Comments	The sequence below was obtained from NCBI (acc # AF480088) using the information provided in the publication.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-44

stage 44

Forebrain
Hindbrain
Isthmus/MHB
Midbrain

cerebellum
post hatch 10 days

Entry 2

GEISHA Id	CNR1.Anderson.2020	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show AGGATTTCCTCAGATGTCTTGTTCCATCCTCCAAGTCTCTTTGAAACCAACAAGACTGAGGTTATGAAGTCAATCCTAG ATGGCCTTGCAGATACAACTTTCCGAACAATTACGACAGATCTCCTTTACGTGGGCTCCAACGATATCCAGTACGAAGA CATGAAAGGCGACATGGCATCCAAGCTGGGATACTACCCCCAGAAGTTCCCTCTCTCCTCCTTTAGGGGTGATCCTTTC CAAGAAAAAATGACTGCAGGAGATGATCCCCTGCTAAGCATTATTCCCTCAGACCAGATCAATATCACAGAGTTTTACA ACAAATCCTTGTCCACGTTTAAGGAAAATGAGGAGAACATACAGTGTGGGGAGAACTTCATGGATATGGAGTGCTTTAT GATCCTAAATCCCAGCCAGCAGCTGGCCATCGCTGTGCTGTCGCTCACCCTGGGCACCTTCACAGTCCTAGAGAACCTC CTGGTCCTGTGTGTTATCCTCCACTCCCGAAGCCTGCGATGTAGACCCTCTTATCATTTCATAGGCAGCCTGGCTGTGG CCGACCTCCTGGGCAGCGTGATTTTTGTCTACAGTTTTGTTGATTTCCATGTTTTCCACCGGAAGGACAGCCCCAACGT CTTCTTGTTCAAGCTGGGTGGAGTTACAGCCTCCTTCACCGCCTCCGTAGGTAGCCTTTTTCTCACGGCAATAGACCGG TACATATCTATACACAGGCCACTAGCTTACAAAAGGATTGTAACCCGACCAAAGGCTGTCGTTGCGTTTTGTGTGATGT GGACCATCGCCATTGTAATAGCTGTTCTTCCGCTGCTCGGCTGGAACTGCAAAAAGCTCAACTCTGTGTGTTCAGACAT ATTCCCTCTCATCGATGAGACGTACCTGATGTTCTGGATTGGGGTCACCAGCGTCCTCTTGCTGTTCATTGTCTATGCC TATATGTACATACTGTGGAAGGCGCACAGCCACGCTGTTCGCATGCTTCAGCGCGGCACGCAGAAAAGCATAATCATTC AGAGTACGGAGGATGGTAAAGTACAGATCACTAGACCTGATCAAACTCGTATGGACATCAGGTTAGCCAAAACCTTGGT CCTTATTCTAGTCGTTTTAATCATATGCTGGGGCCCTCTCCTCGCCATAATGGTGTACGATGTCTTTGGGAAAATGAAC AAGCTCATCAAGACTGTCTTTGCCTTCTGTAGCATGCTCTGTCTGCTGAATTCGACAGTGAATCCCATCATCTACGCTC TGAGGAGCAAGGACTTGCGACATGCCTTCCGGAGCATGTTCCCCACCTGCGAAGGGACTGCACAGCCTCTGGATAACAG CATGGAGTCTGACTGCCAGCACAAACACGCCAACAACGCGGGAAACGTGCACAGGGCTGCTGAGAGCTGCATTAAGAGC ACAGTTAAGATTGCCAAAGTGACCATGTCTGTCTCCACAGACACGACTGCTGAAGCATTGTAAGTCAGAGACTTCTCAG CGTTGTGAGAAAAGGAGTTGGTTAAAAAAAAAAAAATAATAATTCAACAACAGAGAATACCAAACCCGTGGCTTAACGT GTTTGTACCTCCCTGTAATATCTTTTTGGTTTGTCATTGTAGGCTAAGCAATGGTTGTGTTAAGAGCATTACCATCCGC CAGTTCTTTGAGTTTTACAATTAGGGATCCAAGCTAAATTTTCAAAAGTTGTTTGGTTGTTTCTTTTTCCCCCTCAAAA AGTGTTTACTGGATAATAGCAAGTTTCCTGCAAGAACACAGGAAAAACACCAAGCTAGCAAAAGTTCCTTTTAGGGGTG CGAAGAAAAATTGTGAAACCTAATTGAAAACGAATGCATCCTAAATCAGTACCATTCAATAAGAAAAAGCCTTGTCATC ATGCTGTCCATCTCAATGTGAAATGTATTTCATGTCTGTAAGTAATAGGAGTTTTTGATTTTTTCCAAAAGCGGCAGTG CTGAGTTTTAGAAGTTTTGTAAAATGTGTTGTGTCCTGTGAATTGTATGCTGTTTTATTATGTGTTATTGATATTTGTC CGATTAAACAAAGTGATAAGGTAGATTTATGTGGAAATAATGTGAAATGTGATATGTAAACCCCATTGAAAACACTTAC TGTATTTGAAGAGTTCCTATGAGCTATTTTGGAAATTTTACACTTCTAGTGGTCTTCTGTGGACTTAGGGGAAAGGCTT CATGTTCTTTTACTAAAATTACTTCCCTACTACCTTTTATTTTCACATGCATATGAGAATAACAGCAACAAAGGAATAG AGGAGGAATATAAGAAAGGAATGCACTGGTTCAGACTTTTAAATACCGCTGCGTTTATACAGAAGGACATTTACTGTTG TACAGACTTATCTCCCTTCTCTTGGGTGTTGTGTGACTATGAACACTGAAAGCAGAGGTCCCGGATTTTGGCTCCTTGT GTCACATGTTGGTGCTGGACCACTGAAGACAGCATGTGTCTGGTTCCGCGTGCGATGTAATCACTGTGCCGTCGATGTA TACTTGAAGTGTGTCGCATTCCTGTATCCCAGGTTTAAGCCAATTCAGAGCCTGAGATGCCGGACTTCAGCCTTCACTC AGAGAGGGGGGAAGTATTGTCAGATTTAGGCATTTTCTTATTGTGTGAGCGTGTATATAAATAAATATCTATGTGTGTG TACGCGTGTGTGCGTGTGTGTATGTAAGTATAATAAGTGTGAGTCACGGTAGCATAACTAAGATAGGACACTATGACCA AATGTAAGCTGTATTTCTTGTTGCACGCTTTGCACACAAATTCTGTTTCTAAAATTGAGTTCTTCCAACTGATTACTGG CGAAGGTACCGTATTACGAACATACAGATCCAACACTGAGGGGTGTATCCATGTGCTAGAGGAAACAACCTTCCAGCTG TGCTTGAGAATGAAATGCAGCGAGGCAGAGATGGGTGTGAGCCAGCACTGACCACTGGAGTGGCTGCTGAGGGCGTTCT GGAAATGGAGGACGCCAGAAATAAAGGAGCGTTTCAATCCATACGTATTCTGATCTGATTGTGTGAAACGAGGTGAGTC TTGCTGTGAAACCAGGATACAGAGGACAAGGTGTGATTTCATCAGCTTCGAGGAAGGTGAAGTTACTCATAAAAGTGGA GACTCTGCTCTGTAGTGGGATTGTGTTTGACACCTGGAATTTCCACAAGGAGAATGTTGCTAGTCTTTAAGGCATGGAT ATTGTCTAACACTGAAGGTACTGTGTCCTGTTCTCTGCTGCCTTCCTTTTTTGGGCTGTTTCCTTATGCCCCTCCTGGC TGCTTTCTGCCAAAATGGCTGTGAGTGTGGCCTAGCCCGCTAGCTGCCTGGTGTACGCCACAGGTGGACTGACTCCCTC AGTGACACTGGGCCAGCAGAGCTGCTGTCCTGCAGAGGGCTTACATAGGGAAGGAGGGCAGGGTGGTAGCTTTGAGGTT GCTGGCCACCAGGATGTCTCCATGGTGTTTGGAAGTTGTAGTGCAGGCCAGAGCAGCTGGTAGCACAAAAGGCCAAGCT GAGCTTAGCTGGCAGCTCTTCGGTGGCAGAGGTGGTTGTGAGTTCAGGGCGCTCAGATGCTGTGTGTGATGGCACCTGG CAGAGATCTCCTCAGGAGAGGTACTGGGCAGCAAAAGTTATGGGGGTATTCTCTTCCACCTCCCTCCCTGCAGCTAACC TGAGTGGTGGGACACGACATCCCGCCCCTGAGTGGGCCAGCGCAGGTCTCTCTCGTATCTAGATGTAGTCCTTCCTAGA GCAATCCTCTTGGAGAGGAGGGGGGAATCCCACTTAAATGTAAAGGTATTTTAAGAGCCATTTTTGAAACTGTCTTCTT GTGAATTAAATGCAAACTTTGTGGACTTTCGTTGTGTATTTGAGTTCTAAATTTTATGTGATAAATCATGGGACAATGG GGCTGTCTTGGCACTTAACTTGGTGCTTACTGATAGAATAAGAAATAGCATCCTGTGAAACGTTACCGTCTATCATCAG GATCTTCATTTGCATAATGAGTTTTTCTAAAGCTCTGGGAGCTGTGTCGGTTCACTTAGAACCATTTATTCAAGAGGTG GCAACCATTTGCCTACAAGTTGCACATGGAGTGGGACGGCCAATTCATTAGCAAAACCTGCTGCCGTTCCGAGATAAGC TGTACTTCACCTTCAGCTCTAGCAGTTCCCCATTTGCAGCTGACTACCTTCACCTAGCGATAGCACAGCCAACCTGTGC TCCACGGCCACCCACACTGTCACCACCCAACCAGCGATAGTCACCATTATGTGTACCTGAAAACTCCAAATGTCGTATA GCTGTAAGAAGATCATTTGTGTTACATGCGTGCAGAGTTAGATTCTCAACAGTCTTGATTGTATATTTGTATAATATAA TCTCCGCGACGCTGTGCAATCGATATCCGCGTTTTCTTGCACTGGTCTCTGGATGAAAATTGTAGTGTGTCTGTTGCGA GATAGACAGCGCATTTTGCCTGCTGTTACTGGGCTGAATGTATGTAAATAAGTGGGAAAAACAAACGTCATCTGTACAA GCAGTGGCCTAAAAGTCTGTAATTGTAGAGTAGGGCAATTGTTGAAGTTGCTGTGACATCTCAAATACTACCTTTGAAT AAACTGTTTACAAGGTCTCTTGAGATGCTGTCTCATAGTGAAAGGAAAATACTTCCCTGTGATAATATAAGGTAAAGAG ATGGGGCTACCCGAGCTTTTTATTTCCAGTGTTTGAAAGTGGAGAACATAACTCTTTATTGTCTGTAAATCTTACATTA TTACTTCCTCTTAGAAGAATATTGTATCATTAGATGTTTGTTTGAGCTGGTAACATCCTTGCAACTGCTGCAATATTTT TCATTAGCAACCTGTATAATAGTTTGTACACAAGTACTGTTCAGATTGTCATGAAAAGTAGCTTTGACCATTTACCTAC CAGTAGCAGAATAGTATTTCTGTAAGATTTCCAGTGTACTACTACCATATCATATTTTATTTCTATAATGTAATTAAAC TGTTATTTATTCAAGGAAAAAAAGAAGCATTCCTCTACTTTTTTTTTGTTTTCCAAATTTTGAGGTAATGAGGAAGCCA CGTGATGATGCTGCCTCATCCCACAATCTGGTGCTCTACGTTTTGTTTATAAATTTGTCTGTCAGATTCTGAAACAACT GCTTAAACAACTTGACGACAGGTTGTCAAGCTCTGTGGGGTTTAATTGTACGCTGATATCTTTGAAGGAGGAGGTAGAT TATGTATTTGTGTATTCAGTACTATGGAGACGAGAGAAATGACATAGTTAAAACTGAATCTCCTGCTCCATTATGTAGG CAATTTCCCCTTTCCTCTGTATTAGCAAAAAATGCAATAAATCTCTTTTGCCTTCGTCA
Comments	Images provided by Claire Anderson. As insufficient information was provided to verify sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number: NM_001038652.1 ). Related paper: Begbie J, Doherty P, Graham A. Cannabinoid receptor, CB1, expression follows neuronal differentiation in the early chick embryo. J Anat. 2004 Sep;205(3):213-8.