GEISHA - A Chicken Embryo Gene Expression Database
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HOXD4
homeobox D4

Gene
Official SymbolHOXD4
Official Full Namehomeobox D4
CGNC ID52136
also known asChox-a, homeobox protein Hox-D4|homeobox protein Hox-A, Homeobox protein Hox-D4, Hox-D4, HOXD4, Chox-A
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001012293
PolypeptideNP_001012293
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.54375
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3233ENSG00000170166MIM:142981MIM:142981
Mouse15436ENSMUSG00000079277All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:96208
Xenopus100497379, 100380950478961
Zebrafish30329ENSDARG00000059276ZDB-GENE-980526-214ZFIN:ZDB-GENE-980526-214
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene424139
Ensembl GeneENSGALG00000023419
KEGGgga:424139

Entry 1

GEISHA IdChEST873m19Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AGATNTATAGGGCGATTGGAGCTCCCCGCGGTGGCGGCCGCGGCTCGAGCTTTAGCGGCCAAAAGTGGACGGTTTCTCG
TTATCTGGACGCTTTCATGCACACACACGCGCAGATTTTGTATGTGAGTGTGCGAGCGAGCGTGCGTGCCCACGTGTGC
ACACGTACGTGTTGAGGTCGCGAAGTGAATGAGAAGTTACTGATTGCCTAATTTTATTCAGCAGAACGAAATTCTGGTA
ACTTTTGGATGACCTCTGCGAGACAAAGACAGGACAGATCTATTGTACATCATATTGCCCTCTTCTTTGATGTCTTTTC
TTTTCCTCGCCTCCTTATCGGTTCCCTCCCTCCACGTCCCGCTCCGACTCCTCGCCCCGCATCTCTCTCGAGATTTTAT
TCGTATCGGAGCCCGGCGGCCATCCCGCCCGGCGGATGGGGCGGAGGGGTGGGGGGGTGAGGGGGAGGTGANGGCTCTG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Lateral Plate Mesoderm
Primitive Streak
 
7-12
stage 7
stage 7
stage 8
stage 8
stage 10
stage 11
stage 11
stage 12
stage 12
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Primitive Streak
Somites
Dorsal view.
Ventral view.
13-18
stage 17
stage 18
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Spinal Cord
Wing
 
19-24
stage 21
stage 22
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Spinal Cord
Wing
 
25-29
stage 25
stage 29
stage 29
stage 29
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Spinal Cord
Surface Ectoderm
Wing Mesenchyme
 

Entry 2

GEISHA IdHOXD-4.Reid.2002Data SourcePublication
Complete cDNA Template Probeshow
TCTCCTCCCGCGGCGCTGCGCGGAGCCGCTCGCAGCTGCCCCCCGGATTGCTACGCGGGCGCAAAATGGATTACAGCGA
TCGTCCCCGGCTCTTCGGCACGCGGGCGCTGCCGCCCACCGTGAACCCCAATTACAGCGGAGGGGAACCTAAGCGCTCC
CGAACAGCTTACACCAGGCAGCAAGTCCTAGAACTGGAAAAAGAATTTCATTTTAACAGGTACCTGACCCGGCGCCGCC
GTATCGAGATAGCGCACACTTTGTGTCTCTCTGAGCGCCAGATCAAGATCTGGTTTCAGAACAGAAGAATGAAGTGGAA
AAAAGACCACAAACTGCCCAACACTAAGGGCAGGTCTTCCTCCTCCGCTTCTAACCCCCACTTACAGACTGTTCCCAAG
GACCATCAGACTGACTTGACAACTTTATAGAAGAGGTGAAATTTTCCATTTCATCCTTCGATTCTGACCAGTACTGTAC
ATAAGTGACACTATCCAAGCAGAACCTGCGTGTAGCAGCCAAGGACTCGAGAAACTGCCATCTCTCCGTAAGGTACTGT
GGTACAAAGGAGACTGAATGACGCTACTCCGGACTTTATTTTATTTGCCTCTCGCTAGCACAGAAAGAAAGGGGGGAAA
AAAAGCATCATACAGGCAGTAGGAATTGGGAAAGTCTTAAACGAGACCTTCTGTCCATAAAAAGTAATAAATCATTGAA
AATGAAACTGTCCTGTGTTTCAGTTTGGGATTTGAAAGTGAAGGTTTGATGCTTTATTCTGGGATTTTATTATTATTAT
TTTGCTTTTAATTGTCTTTTTATCCCGCACAGCGAGTGTGATGCTTTTGGGGCAAGTCGAGGACAGGAAATTTATGGCA
CGGTCCTTTATTTGAACACAAAGCCTCGCGTTTGTGAACTTTTTTGTGCTGCTTTACCTTTACTTGGTGTAATGAAAAT
ACTCACTCATTTCCATAACGTCTCAGAAGATGTGCATAGGAATTAAGTGAAAACGGGTTATTTTGTGTCCTGATGGTGT
TAGCGTATTTATTTATTTGTTATGTAGAAGAGTGAAGATTAAAA
CitationReid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
CopyrightCopyright © 2007 UBC Press
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001233267).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 28
Hindbrain
Spinal Cord
Vertebrae
 
31-44
stage 35
stage 44
stage 44
Dermis
Spinal Cord
Surface Ectoderm
Comparison of several genes

Entry 3

GEISHA IdHOXD4.Hughes.2011Data SourcePublication
Complete cDNA Template Probeshow
TCTCCTCCCGCGGCGCTGCGCGGAGCCGCTCGCAGCTGCCCCCCGGATTGCTACGCGGGCGCAAAATGGATTACAGCGA
TCGTCCCCGGCTCTTCGGCACGCGGGCGCTGCCGCCCACCGTGAACCCCAATTACAGCGGAGGGGAACCTAAGCGCTCC
CGAACAGCTTACACCAGGCAGCAAGTCCTAGAACTGGAAAAAGAATTTCATTTTAACAGGTACCTGACCCGGCGCCGCC
GTATCGAGATAGCGCACACTTTGTGTCTCTCTGAGCGCCAGATCAAGATCTGGTTTCAGAACAGAAGAATGAAGTGGAA
AAAAGACCACAAACTGCCCAACACTAAGGGCAGGTCTTCCTCCTCCGCTTCTAACCCCCACTTACAGACTGTTCCCAAG
GACCATCAGACTGACTTGACAACTTTATAGAAGAGGTGAAATTTTCCATTTCATCCTTCGATTCTGACCAGTACTGTAC
ATAAGTGACACTATCCAAGCAGAACCTGCGTGTAGCAGCCAAGGACTCGAGAAACTGCCATCTCTCCGTAAGGTACTGT
GGTACAAAGGAGACTGAATGACGCTACTCCGGACTTTATTTTATTTGCCTCTCGCTAGCACAGAAAGAAAGGGGGGAAA
AAAAGCATCATACAGGCAGTAGGAATTGGGAAAGTCTTAAACGAGACCTTCTGTCCATAAAAAGTAATAAATCATTGAA
AATGAAACTGTCCTGTGTTTCAGTTTGGGATTTGAAAGTGAAGGTTTGATGCTTTATTCTGGGATTTTATTATTATTAT
TTTGCTTTTAATTGTCTTTTTATCCCGCACAGCGAGTGTGATGCTTTTGGGGCAAGTCGAGGACAGGAAATTTATGGCA
CGGTCCTTTATTTGAACACAAAGCCTCGCGTTTGTGAACTTTTTTGTGCTGCTTTACCTTTACTTGGTGTAATGAAAAT
ACTCACTCATTTCCATAACGTCTCAGAAGATGTGCATAGGAATTAAGTGAAAACGGGTTATTTTGTGTCCTGATGGTGT
TAGCGTATTTATTTATTTGTTATGTAGAAGAGTGAAGATTAAAA
CitationHughes MW, Wu P, Jiang TX, Lin SJ, Dong CY, Li A, Hsieh FJ, Widelitz RB, Chuong CM. In search of the Golden Fleece: unraveling principles of morphogenesis by studying the integrative biology of skin appendages Integr Biol (Camb). 2011 Apr;3(4):388-407. Epub 2011 Mar 24.
Copyright© Royal Society of Chemistry 2011
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_001233267.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-29
stage 26
stage 26
stage 29
Surface Ectoderm
dorsal epidermis

Entry 4

GEISHA IdHOXD4.Guidato.2003Data SourcePublication
Complete cDNA Template Probeshow
CTTTAGCGGCCAAAAGTGGACGGTTTCTCGTTATCTGGACGCTTTCATGCACACACACGCGCAGATTTTGTATGTGAGT
GTGCGAGCGAGCGTGCGTGCCCACGTGTGCACACGTACGTGTTGAGGTCGCGAAGTGAATGAGAAGTTACTGATTGCCT
AATTTTATTCAGCAGAACGAAATTCTGGTAACTTTTGGATGACCTCTGCGAGACAAAGACAGGACAGATCTATTGTACA
TCATATTGCCCTCTTCTTTGATGTCTTTTCTTTTCCTCGCCTCCTTATCGGTTCCCTCCCTCCACGTCCCGCTCCGACT
CCTCGCCCCGCATCTCTCTCGAGATTTTATTCGTATCGGAGCCCGGCGGCCATCCCGCCCGGCGGATGGGGCGGAGGGG
TGGGGGGGTGAGGGGGAGGTGAGGGCTCTGCTCAGACAAAGGCTGCCCGCACCTGGGGGCAGGGAGGCGGCCGCACGCG
GGGAATGGCCCCAAAACTCCGGGATCGGCCCCGGAGGGCGAAGCCCGCCGCGGAGGGGTCGCTCAGCTCCGCGTATATT
ATTTAGTTAAATTCGTGGAAATTCTGAGGCGCACACAAATCCGGTGATCGGCTCCCCGCCTCCCCATTGGCCGGGCCGG
TCACATGCACGCCTAACTTTATTCAGTTGACAGCAAGTAGGAGGGCTCTATGGAAGGAGAAAAAAAGACAACACGAGAA
AAATTAGTATTTTCTACCTTCCGAAATTAATGGCCATGAGTTCGTATATGGTGAACTCTAAGTATGTGGATCCCAAATT
TCCTCCTTGCGAGGAATATTTGCAGAGCAGCTACCTAGGCGAGCAGGGGGCCGAGTATTACGGGGCCTCGCAGGGCTCC
GATTTCCAGCACCAGGGGCTCTACCCACGGTCAAACTACAGCGAGCAGCCCTTTGGCTGCGCCGGTGCCCAGGGCTCCG
CCGTGCAGCCGCGGGGTCACGGACAGGAGCAGTCCGCCCCTCCGAGCCACTTCCCCGGCCAAGCCGAGCATTGTCCTCC
GCCTCCAATGTCCAACTCCCGAGCCTGCGGCCAGCAGCCAGCCCTCAAAGCCCCCCACGGGTCAGCAGTTAAGCAGCCA
GCAGTAGTTTATCCCTGGATGAAGAAAGTCCATGTTAACTCGGTGAACCCCAATTACAGCGGAGGGGAACCTAAGCGCT
CCCGAACAGCTTACACCAGGCAGCAAGTCCTAGAACTGGAAAAAGAATTTCATTTTAACAGGTACCTGACCCGGCGCCG
CCGTATCGAGATAGCGCACACTTTGTGTCTCTCTGAGCGCCAGATCAAGATCTGGTTTCAGAACAGAAGAATGAAGTGG
AAAAAAGACCACAAACTGCCCAACACTAAGGGCAGGTCTTCCTCCTCCGCTTCTAACCCCCACTTACAGACTGTTCCCA
AGGACCATCAGACTGACTTGACAACTTTATAGAAGAGGTGAAATTTTCCATTTCATCCTTCGATTCTGACCAGTACTGT
ACATAAGTGACACTATCCAAGCAGAACCTGCGTGTAGCAGCCAAGGACTCGAGAAACTGCCATCTCTCCGTAAGGTACT
GTGGTACAAAGGAGACTGAATGACGCTACTCCGGACTTTATTTTATTTGCCTCTCGCTAGCACAGAAAGAAAGGGGGGA
AAAAAAGCATCATACAGGCAGTAGGAATTGGGAAAGTCTTAAACGAGACCTTCTGTCCATAAAAAGTAATAAATCATTG
AAAATGAAACTGTCCTGTGTTTCAGTTTGGGATTTGAAAGTGAAGGTTTGATGCTTTATTCTGGGATTTTATTATTATT
ATTTTGCTTTTAATTGTCTTTTTATCCCGCACAGCGAGTGTGATGCTTTTGGGGCAAGTCGAGGACAGGAAATTTATGG
CACGGTCCTTTATTTGAACACAAAGCCTCGCGTTTGTGAACTTTTTTGTGCTGCTTTACCTTTACTTGGTGTAATGAAA
ATACTCACTCATTTCCATAACGTCTCAGAAGATGTGCATAGGAATTAAGTGAAAACGGGTTATTTTGTGTCCTGATGGT
GTTAGCGTATTTATTTATTTGTTATGTAGAAGAGTGAAGATTAAAA
CitationGuidato S, Prin F, Guthrie S. Somatic motoneurone specification in the hindbrain: the influence of somite-derived signals, retinoic acid and Hoxa3. Development. 2003 Jul;130(13):2981-96.
CopyrightPublished by The Company of Biologists 2003. This material is protected by a copyright retained by the authors.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_421990.3 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
  
25-28
stage 28
stage 28
Hindbrain
 

Entry 5

GEISHA IdHOXD4.Barak.2012Data SourcePublication
Complete cDNA Template Probeshow
ATGGCCATGAGTTCGTATATGGTGAACTCTAAGTATGTGGATCCCAAATTTCCTCCTTGCGAGGAATATTTGCAGAGCA
GCTACCTAGGCGAGCAGGGGGCCGAGTATTACGGGGCCTCGCAGGGCTCCGATTTCCAGCACCAGGGGCTCTACCCACG
GTCAAACTACAGCGAGCAGCCCTTTGGCTGCGCCGGTGCCCAGGGCTCCGCCGTGCAGCCGCGGGGTCACGGACAGGAG
CAGTCCGCCCCTCCGAGCCACTTCCCCGGCCAAGCCGAGCATTGTCCTCCGCCTCCAATGTCCAACTCCCGAGCCTGCG
GCCAGCAGCCAGCCCTCAAAGCCCCCCACGGGTCAGCAGTTAAGCAGCCAGCAGTAGTTTATCCCTGGATGAAGAAAGT
CCATGTTAACTCGGTGAACCCCAATTACAGCGGAGGGGAACCTAAGCGCTCCCGAACAGCTTACACCAGGCAGCAAGTC
CTAGAACTGGAAAAAGAATTTCATTTTAACAGGTACCTGACCCGGCGCCGCCGTATCGAGATAGCGCACACTTTGTGTC
TCTCTGAGCGCCAGATCAAGATCTGGTTTCAGAACAGAAGAATGAAGTGGAAAAAAGACCACAAACTGCCCAACACTAA
GGGCAGGTCTTCCTCCTCCGCTTCTAACCCCCACTTACAGACTGTTCCCAAGGACCATCAGACTGACTTGACAACTTTA
TAGAAGAGGTGAAATTTTCCATTTCATCCTTCGATTCTGACCAGTAC
Citation Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001012293.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 6
stage 6
Headfold
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
 
7-11
stage 7
stage 7
stage 8
stage 8
stage 9
stage 9
stage 10
stage 10
stage 11
stage 11
Headfold
Neural Plate/Tube
Primitive Streak
Somites
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.54375

Mouse

EmageMGI:96208
EurexpressMGI:96208
MGI GXDMGI:96208

Frog

Xenbase478961

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-214
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