GEISHA - A Chicken Embryo Gene Expression Database
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LIMS1
LIM zinc finger domain containing 1

Gene
Official SymbolLIMS1
Official Full NameLIM zinc finger domain containing 1
CGNC ID49937
also known asPINCH1, LIM and senescent cell antigen-like-containing domain protein 1|LIM and senescent cell antigen-like domains 1|particularly interesting new Cys-His protein 1, particularly interesting new Cys-His protein 1 , PINCH1, LIMS1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001001766
PolypeptideNP_001001766
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.15049
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3987ENSG00000169756MIM:602567
Mouse
Xenopus100216119, 432196, 444502967922
Zebrafish554019ENSDARG00000026985ZDB-GENE-050522-236ZFIN:ZDB-GENE-050522-236
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene414880
Ensembl Gene
KEGGgga:414880

Entry 1

GEISHA IdChEST59d19Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGCGGACGTGCAGCGCCATTACCGGCGCCCGGCGCGGCTCCTCCCGTTGCGGCGGAGCTCGGCGCGATGCTGGGGGTGG
CGGCGGCGGGGCTGCCGGGCAGCAACATGGCAAACGCACTCGCAAATGCCATCTGTGAGCGCTGTAGAGGGGGCTTTGC
ACCAGCAGAGAAAATCGTCAACAGCAATGGTGAGCTGTACCACGAGCAGTGCTTCGTGTGTGCCCAGTGCTTCCAGCAG
TTTCCTGAAGGGCTCTTCTATGAGTTTGAAGGGAGGAAGTACTGTGAACATGATTTTCAAATGCTTTTTGCCCCTTGCT
GCCATCAGTGTGGTGAGTTCATTATTGGTCGTGTTATTAAAGCTATGAACAACAGTTGGCATCCAGATTGCTTCTGCTG
TGATATCTGCCACAAAGTATTGGCAGATATTGGATTTGTCAAGAATGCTGGCAGACATCTCTGCCGTTCTTGCCATAAC
AAGGAAAAAGCCCGAGGCCTGGGAAAGTACATTTGCCAGAAGTGCCATGCCATTATTGATGAACAACCTCTCATTTTCA
AAAATGATCCTTATCACCCTGATCATTTCAACTGTGCAAACTGCGGGAAGGAACTTACTGCTGATGCTCGTGAGCTGAA
GGGAGAATTATATTGTTTACCCTGCCATGACAAAATGGGCGTTCCCATCTGTGGAGCATGTAGAAGACCAATTGAAGGA
CGTGTGGTGAATGCAATGGGCAAACAGTGGCACGTGGAGCATTTTGTTTGTGCCAAATGTGAAAAGCCATTCCTGGGTC
ATCGTCATTATGAGAGAAAAAGCCTGGCATATTGTGAGACCCACTACAATCAGCTGTTTGGTGATGTATGTTTTCCATG
CAATCGTGTGATTGAAGGAGATGTTGTGTCTGCTCTGAATAAGCATGGTGCGTGAACTGTTTCGCT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Epiblast
Hensen's Node
Primitive Streak
 
7-12
stage 9
stage 10
stage 10
stage 10
stage 10
stage 10
Blood Vessels
Endoderm
Extraembryonic
Spinal Cord
Surface Ectoderm
Yolk Sack or Stalk
 
13-18
stage 16
Lateral Plate Mesoderm
Limb Buds
Myotome
Pharyngeal Arches and Clefts
Widespread Expression
 
19-24
stage 20
stage 22
stage 22
stage 23
stage 23
stage 24
Cardinal Veins
Foregut
Leg Mesenchyme
Limb Buds
Myotome
Neural Crest
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Splanchnic Mesoderm
Widespread Expression
Wing Mesenchyme
hand transected
motor horns,
25-26
stage 26
Widespread Expression
 

Entry 2

GEISHA IdPINCH-1.Martinsen.2005Data SourcePublication
Complete cDNA Template Probeshow
TGTGTCTGCTCTGAATAAGGCATGGTGCGTGAACGGTTTCGCTGGTTCAACTGGCAACACTAAGTTAACGCTCAAAAAT
AAATTGGTGGAGTTGGACATGAAGCCTGTCTGCAAAAAGTGCTATGAGAAGTTTCCTCTAGAGCTGAAGAAGAGACTGA
AGAAATTAGCTGAAACCGTGGGAAGGAAGTGAAGACTGGGTCTGCTCTCCCCTTTCCTTATGAAAATGAAAAATGACAA
ATGAAAATTTCCCTTACGAAAAACTCAATCGGTCACTGGGGAGGGACTCTGAGGCTGTAATCAGACTACAGATTACGAT
GCAGGCCTTTCGTCTGTGACATTCTCCATTCTCTCGGGAGAGTACATGTGTATGGATTGGTGGATAAACAGGCCACGCT
TCTGTCAACTCACCTGAAAGGTTTCGGGCCCGTGCTAATGCAC
CitationMartinsen BJ, Neumann AN, Frasier AJ, Baker CV, Krull CE, Lohr JL. PINCH-1 expression during early avian embryogenesis: implications for neural crest and heart development. Dev Dyn. 2006 Jan;235(1):152-62.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
Comments"A linearized plasmid of chick PINCH-1 sequences" from the "3-untranslated region (UTR) sequences derived from primers (primer 7, 5-AAGGCGATGCTGTGT-CTGCTCTGA-3; and primer 8, 5-TGCCATGGCCACTTGTATCG-3) designed from the three overlapping cDNA sequences mentioned above (accession nos. AJ456621, BU490370, and BU476868) were used as a template to generate digoxigenin-labeled antisense probes."
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 8
stage 9
stage 10
Neural Crest
Neural Plate/Tube
Surface Ectoderm
 
13-18
stage 13
stage 17
Neural Crest
Neural Plate/Tube
Pharyngeal Arches and Clefts
 
19-24
stage 20
stage 21
stage 21
stage 22
Head Mesenchyme
Myocardium
Outflow Tract
Pharyngeal Arches and Clefts
Splanchnic Mesoderm of Secondary Heart Field; Dorsal Mesocardium
25-30
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 29
stage 29
Aorta
Atria
Leg Muscles
Limb Buds
Liver
Lung
Nephric Tubules
Outflow Tract
Sclerotome
Somatopleure
Dorsal Body Wall Muscle
Muscles of Body Wall
Pulmonary Artery
Smooth Muscle Cells of Lung Buds
Smooth Muscle of Lung Buds
Vertebral Body
31-34
stage 34
Myocardium
Ventricles
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.15049

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase967922

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050522-236
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