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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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EPHA3
EPH receptor A3

Gene

Official Symbol	EPHA3
Official Full Name	EPH receptor A3
CGNC ID	11474
also known as	CEK4, ETK1, ephrin type-A receptor 3\|EK4\|EPH-like kinase 4\|receptor tyrosine kinase\|tyrosine-protein kinase receptor ETK1, Tyrosine-protein kinase receptor ETK1, CEK4, Ephrin type-A receptor 3 precursor
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205430
Polypeptide	NP_990761
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.805

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2042	ENSG00000044524		MIM:179611
Mouse	13837		All phenotypic alleles (1):Targeted, knock-out(1)	MGI:99612
Xenopus	100495045			6035244
Zebrafish	795902, 114356		ZDB-GENE-060503-862, ZDB-GENE-010724-10	ZFIN:ZDB-GENE-060503-862, ZFIN:ZDB-GENE-010724-10

Gene Ontology

Molecular Function	ATP binding, ephrin receptor activity, GPI-linked ephrin receptor activity
Biological Process	cell migration, ephrin receptor signaling pathway, fasciculation of motor neuron axon, more...
Cellular Component	early endosome, integral component of plasma membrane

Links to other databases

Entrez Gene	396402
Ensembl Gene
KEGG	gga:396402

Entry 1

GEISHA Id	EphA3	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CGCTCTGCTCGCGCGCTGCTGCCCCGCCGACATGGACCGCCGCCGCCTGCCGCTGCTGCTGCTCTGCGCTGCCCTCGGC TCCGCCGGGCGTCTGAGCGCCCGCCCCGGCAACGAAGTTAATCTGCTGGATTCAAAAACAATTCAAGGGGAGCTGGGCT GGATCTCCTACCCATCACATGGGTGGGAAGAGATTAGTGGTGTTGATGAGCATTATACTCCAATCAGAACTTACCAAGA GAGCAATGTTATGGATCACAGTCAAAACAATTGGCTGCGAACAAACTGGATTCCACGCAATTCAGCGCAGAAGATATAT GTGGAGCTCAAGTTTACCTTGAGGGACTGCAATAGTATCCCTCTAGTTCTGGGCACTTGCAAAGAGACTTTCAATCTGT ATTACATGGAATCCGATGATGACCATTTGGCAAAGTTCAGAGAGCACCAATTTACGAAGATTGACACCATTGCGGCTGA TGAGAGCTTCACCCAGATGGATCTTGGGGACCGGATTCTCAAGCTGAATACCGAAGTCCGCGAGGTGGGACCTGTTAGT AAGAAGGGCTTTTACTTGGCTTTCCAAGATGTAGGTGCATGTGTTGCCTTAGTCTCGGTGCGAGTGTACTTCAAGAAGT GCCCTTTCACTGTCAAGAACCTCGCCATGTTTCCAGATACAGTTCCTATGGACTCCCAGTCCCTGGTGGAGGTGCGGGG TTCTTGTGTCAATCATTCCAAGGAGGAAGAGCCACCCAAGATGTACTGCAGCACGGAAGGAGAATGGCTAGTGCCCATA GGGAAGTGCTTGTGTAATGCTGGCTATGAAGAGAGAGGCTTTGCGTGCCAAGCTTGTCGACCTGGGTTCTATAAAGCTT CTGCTGGCAATGTGAAGTGTGCCAAATGCCCACCTCACAGCTCTACCTATGAAGATGCATCTCTGAACTGCAGGTGTGA AAAGAATTACTTTCGCTCTGAGAAAGACCCTCCATCCATGGCTTGCACCAGACCACCATCTGCTCCAAGAAACGTTATT TCTAACATCAATGAGACATCTGTTATTCTGGACTGGAGCTGGCCTCTTGATACAGGAGGTCGAAAAGATGTCACTTTCA ACATCATTTGCAAAAAATGTGGAGGAAGCAGCAAGATATGTGAGCCTTGCAGTGACAACGTACGGTTCTTACCCCGTCA GACTGGCCTCACCAACACCACGGTGACAGTAGTGGACCTTTTGGCACATACCAATTACACTTTTGAGATTGATGCAGTC AACGGGGTATCTGACTTGAGTACACTTTCGAGACAATTTGCTGCTGTCAGCATCACGACTAATCAGGCTGCGCCATCCC CCATCACAGTGATAAGGAAAGACCGGACATCCAGGAACAGCGTGTCTCTGTCTTGGCAGGAGCCTGAGCACCCAAATGG AATCATCTTGGACTACGAGGTCAAATACTACGAAAAGCAGGAACAAGAGACAAGCTATACTATTCTGAGAGCCAAAAGC ACTAACGTTACTATCAGCGGCCTCAAACCTGATACCACCTACGTCTTCCAAATTCGAGCCCGAACTGCAGCTAGATATG GGACAAGCAGCCGCAAGTTTGAATTTGAAACCAGTCCAGATTCATTCTCCATTTCCAGTGAAAATAGCCAGGTCGTTAT GATTGCCATTTCAGCTGCAGTTGCCATCATTCTCCTCACGGTTGTTGTGTACGTCTTGATTGGGAGATTCTGCGGATAC AAGAAGTCTAAACATGGTACCGATGAGAAAAGACTACATTTTGGGAATGGCCACTTAAAACTCCCAGGCCTGAGAACTT ATGTAGATCCACATACGTACGAAGATCCCAATCAAGCTGTACATGAATTTGCCAAGGAACTAGATGCTTCTAATATATC AATTGATAAAGTTGTTGGAGCAGGGGAATTTGGAGAAGTGTGCAGTGGGCGCCTGAAGCTGCCTTCTAAAAAGGAAATT TCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCATGG GGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGAATA CATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATGCTT CGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATACTCA TCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTACAC AACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGTGAT GCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGGACG TAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCTGGA CTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAATCCC AGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTTCAG CGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTACAG CTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAGAAG ATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGTTGC TGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTTCTT TGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTAAAA ATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAAATT TC

Stage

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7-12

stage 8

stage 11

Blood Vessels
Forebrain
Hindbrain
Paraxial Mesoderm
Somites

13-18

stage 14

Blood Vessels
Eye
Head Mesenchyme
Paraxial Mesoderm
Somites

19-23

stage 20

stage 23

Eye
Forebrain
Head Mesenchyme
Pharyngeal Arches and Clefts
Somites
Telencephalon

Entry 2

GEISHA Id	EphA3.Baker.2003	Data Source	Publication
Complete cDNA Template Probe	show ATTTCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCA TGGGGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGA ATACATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATG CTTCGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATAC TCATCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTA CACAACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGT GATGCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGG ACGTAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCT GGACTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAAT CCCAGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTT CAGCGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTA CAGCTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAG AAGATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGT TGCTGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTT CTTTGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTA AAAATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAA ATTTC
Citation	Baker RK, Antin PB. Ephs and ephrins during early stages of chick embryogenesis Dev Dyn. 2003 Sep;228(1):128-42.
Copyright	2003 Wiley-Liss, Inc.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

stage 9

stage 11

stage 12

Arteries
Blood Vessels
Forebrain
Heart
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Rhombomeres
Sclerotome
Sinus Venosus
Somites
Splanchnic Mesoderm
Veins

cardiogenic mesoderm
dorsal mesocardium
dorsal mesocardium,
epithelial somite
lateral vasculature
r3, r5
vitelline artery plexus
vitelline vein plexus

Entry 3

GEISHA Id	EphA3.Mühleisen.2006	Data Source	Publication
Complete cDNA Template Probe	show CGCTCTGCTCGCGCGCTGCTGCCCCGCCGACATGGACCGCCGCCGCCTGCCGCTGCTGCTGCTCTGCGCTGCCCTCGGC TCCGCCGGGCGTCTGAGCGCCCGCCCCGGCAACGAAGTTAATCTGCTGGATTCAAAAACAATTCAAGGGGAGCTGGGCT GGATCTCCTACCCATCACATGGGTGGGAAGAGATTAGTGGTGTTGATGAGCATTATACTCCAATCAGAACTTACCAAGA GAGCAATGTTATGGATCACAGTCAAAACAATTGGCTGCGAACAAACTGGATTCCACGCAATTCAGCGCAGAAGATATAT GTGGAGCTCAAGTTTACCTTGAGGGACTGCAATAGTATCCCTCTAGTTCTGGGCACTTGCAAAGAGACTTTCAATCTGT ATTACATGGAATCCGATGATGACCATTTGGCAAAGTTCAGAGAGCACCAATTTACGAAGATTGACACCATTGCGGCTGA TGAGAGCTTCACCCAGATGGATCTTGGGGACCGGATTCTCAAGCTGAATACCGAAGTCCGCGAGGTGGGACCTGTTAGT AAGAAGGGCTTTTACTTGGCTTTCCAAGATGTAGGTGCATGTGTTGCCTTAGTCTCGGTGCGAGTGTACTTCAAGAAGT GCCCTTTCACTGTCAAGAACCTCGCCATGTTTCCAGATACAGTTCCTATGGACTCCCAGTCCCTGGTGGAGGTGCGGGG TTCTTGTGTCAATCATTCCAAGGAGGAAGAGCCACCCAAGATGTACTGCAGCACGGAAGGAGAATGGCTAGTGCCCATA GGGAAGTGCTTGTGTAATGCTGGCTATGAAGAGAGAGGCTTTGCGTGCCAAGCTTGTCGACCTGGGTTCTATAAAGCTT CTGCTGGCAATGTGAAGTGTGCCAAATGCCCACCTCACAGCTCTACCTATGAAGATGCATCTCTGAACTGCAGGTGTGA AAAGAATTACTTTCGCTCTGAGAAAGACCCTCCATCCATGGCTTGCACCAGACCACCATCTGCTCCAAGAAACGTTATT TCTAACATCAATGAGACATCTGTTATTCTGGACTGGAGCTGGCCTCTTGATACAGGAGGTCGAAAAGATGTCACTTTCA ACATCATTTGCAAAAAATGTGGAGGAAGCAGCAAGATATGTGAGCCTTGCAGTGACAACGTACGGTTCTTACCCCGTCA GACTGGCCTCACCAACACCACGGTGACAGTAGTGGACCTTTTGGCACATACCAATTACACTTTTGAGATTGATGCAGTC AACGGGGTATCTGACTTGAGTACACTTTCGAGACAATTTGCTGCTGTCAGCATCACGACTAATCAGGCTGCGCCATCCC CCATCACAGTGATAAGGAAAGACCGGACATCCAGGAACAGCGTGTCTCTGTCTTGGCAGGAGCCTGAGCACCCAAATGG AATCATCTTGGACTACGAGGTCAAATACTACGAAAAGCAGGAACAAGAGACAAGCTATACTATTCTGAGAGCCAAAAGC ACTAACGTTACTATCAGCGGCCTCAAACCTGATACCACCTACGTCTTCCAAATTCGAGCCCGAACTGCAGCTAGATATG GGACAAGCAGCCGCAAGTTTGAATTTGAAACCAGTCCAGATTCATTCTCCATTTCCAGTGAAAATAGCCAGGTCGTTAT GATTGCCATTTCAGCTGCAGTTGCCATCATTCTCCTCACGGTTGTTGTGTACGTCTTGATTGGGAGATTCTGCGGATAC AAGAAGTCTAAACATGGTACCGATGAGAAAAGACTACATTTTGGGAATGGCCACTTAAAACTCCCAGGCCTGAGAACTT ATGTAGATCCACATACGTACGAAGATCCCAATCAAGCTGTACATGAATTTGCCAAGGAACTAGATGCTTCTAATATATC AATTGATAAAGTTGTTGGAGCAGGGGAATTTGGAGAAGTGTGCAGTGGGCGCCTGAAGCTGCCTTCTAAAAAGGAAATT TCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCATGG GGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGAATA CATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATGCTT CGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATACTCA TCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTACAC AACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGTGAT GCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGGACG TAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCTGGA CTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAATCCC AGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTTCAG CGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTACAG CTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAGAAG ATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGTTGC TGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTTCTT TGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTAAAA ATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAAATT TC
Citation	Mühleisen TW, Agoston Z, Schulte D. Retroviral misexpression of cVax disturbs retinal ganglion cell axon fasciculation and intraretinal pathfinding in vivo and guidance of nasal ganglion cell axons in vivo. Dev Biol. 2006 Sep 1;297(1):59-73.
Copyright	Reprinted from Developmental Biology, Volume 297, Thomas W. Mühleisen, Zsuzsa Agoston and Dorothea Schulte, Retroviral misexpression of cVax disturbs retinal ganglion cell axon fasciculation and intaretinal pathfinding in vivo and guidance of nasal ganglion cell axons in vitro, Pages 56-73, Copyright 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
Comments	According to the authors, "The cDNA clones used to generate in situ probes for EphA3, EphA4, ephrin-A5, ephrin-A2, EphB2, EphB3, ephrin-B1, ephrin-B2 or RCS, which recognizes a viral core protein, were described elsewhere (Schulte et al., 1999) or were gifts from J. Flanagan, C. Cepko (Harvard Medical School, Boston), or E. Pasquale (The Burnham Institute, La Jolla, California; Holash and Pasquale, 1995 and Cheng et al., 1995). As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205430)

Stage

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19-22

stage 22

Eye
Retina

Entry 4

GEISHA Id	EphA3.Mellott.2008	Data Source	Publication
Complete cDNA Template Probe	show CTGGGCACTTGCAAAGAGACTTTCAATCTGTATTACATGGAATCCGATGATGACCATTTGGCAAAGTTCAGAGAGCACC AATTTACGAAGATTGACACCATTGCGGCTGATGAGAGCTTCACCCAGATGGATCTTGGGGACCGGATTCTCAAGCTGAA TACCGAAGTCCGCGAGGTGGGACCTGTTAGTAAGAAGGGCTTTTACTTGGCTTTCCAAGATGTAGGTGCATGTGTTGCC TTAGTCTCGGTGCGAGTGTACTTCAAGAAGTGCCCTTTCACTGTCAAGAACCTCGCCATGTTTCCAGATACAGTTCCTA TGGACTCCCAGTCCCTGGTGGAGGTGCGGGGTTCTTGTGTCAATCATTCCAAGGAGGAAGAGCCACCCAAGATGTACTG CAGCACGGAAGGAGAATGGCTAGTGCCCATAGGGAAGTGCTTGTGTAATGCTGGCTATGAAGAGAGAGGCTTTGCGTGC CAAGCTTGTCGACCTGGGTTCTATAAAGCTTCTGCTGGCAATGTGAAGTGTGCCAAATGCCCACCTCACAGCTCTACCT ATGAAGATGCATCTCTGAACTGCAGGTGTGAAAAGAATTACTTTCGCTCTGAGAAAGACCCTCCATCCATGGCTTGCAC CAGACCACCATCTGCTCCAAGAAACGTTATTTCTAACATCAATGAGACATCTGTTATTCTGGACTGGAGCTGGCCTCTT GATACAGGAGGTCGAAAAGATGTCACTTTCAACATCATTTGCAAAAAATGTGGAGGAAGCAGCAAGATATGTGAGCCTT GCAGTGACAACGTACGGTTCTTACCCCGTCAGACTGGCCTCACCAACACCACGGTGACAGTAGTGGACCTTTTGGCACA TACCAATTACACTTTTGAGATTGATGCAGTCAACGGGGTATCTGACTTGAGTACACTTTCGAGACAATTTGCTGCTGTC AGCATCACGACTAATCAGGCTGCGCCATCCCCCATCACAGTGATAAGGAAAGACCGGACATCCAGGAACAGCGTGTCTC TGTCTTGGCAGGAGCCTGAGCACCCAAATGGAATCATCTTGGACTACGAGGTCAAATACTACGAAAAGCAGGAACAAGA GACAAGCTATACTATTCTGAGAGCCAAAAGCACTAACGTTACTATCAGCGGCCTCAAACCTGATACCACCTACGTCTTC CAAATTCGAGCCCGAACTGCAGCTAGATATGGGACAAGCAGCCGCAAGTTTGAATTTGAAACCAGTCCAGATTCATTCT CCATTTCCAGTGAAAATAGCCAGGTCGTTATGATTGCCATTTCAGCTGCAGTTGCCATCATTCTCCTCACGGTTGTTGT GTACGTCTTGATTGGGAGATTCTGCGGATACAAGAAGTCTAAACATGGTACCGATGAGAAAAGACTACATTTTGGGAAT GGCCACTTAAAACTCCCAGGCCTGAGAACTTATGTAGATCCACATACGTACGAAGATCCCAATCAAGCTGTACATGAAT TTGCCAAGGAACTAGATGCTTCTAATATATCAATTGATAAAGTTGTTGGAGCAGGGGAATTTGGAGAAGTGTGCAGTGG GCGCCTGAAGCTGCCTTCTAAAAAGGAAATTTCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGA AGGGATTTCCTGGGAGAAGCAAGCATCATGGGGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTA AAAGTAAACCAGTTATGATTGTTACTGAATACATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCA GTTCACAGTCATTCAGCTAGTAGGCATGCTTCGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTC CACCGAGATCTAGCTGCTCGTAATATACTCATCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTG TATTGGAAGATGACCCAGAAGCTGCTTACACAACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCAT TGCATACCGGAAGTTCACATCAGCCAGTGATGCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAA AGGCCGTACTGGGAGATGTCCTTCCAGGACGTAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACT GCCCAGCTGCCTTGTATCAGCTGATGCTGGACTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGT CAGCATCCTGGATAAGCTGATCCGTAATCCCAGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTT CTCCTGGACCAAAGTAACATTGACATTTCAGCGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGT GCAAAGGCATTTTCACGGGTGTGGAGTACAGCTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGT TGGTGTTACAGTTGTGGGGCCTCAAAAGAAGATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCT GTTCCTGTGTAAGGTACCAAAATGATGTTGCTGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGG CTGATAAACGGCACGGTTTAAAGGAGTTCTTTGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGA CACTCAAATACTGAGTATAAATGCCTTAAAAATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCT CTTAACTGACTGTTAATGCAGATAGTAAATTTC
Citation	Mellott DO, and Burke RD. Divergent roles for Eph and Ephrin in Avian Cranial Neural Crest. BMC Developmental Biology 2008, 8:56.
Copyright	© 2008 Mellott and Burke; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205430.2. Authors said: Primers EphA3-F1 (5'-GTCGACCTGGGCACTTGCAAAGAG-3') and EphA3-R1 (5'-GGTACCGCCAGCATTACACAAGCAC-3') were used to amplify a fragment of the chicken EphA3 gene that was subsequently subcloned between the BamHI and EcoRV sites of pBluescript II SK +.

Stage

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13-14

stage 14

Head Mesenchyme

Entry 5

GEISHA Id	EPHA3.Takahashi.2003	Data Source	Publication
Complete cDNA Template Probe	show GATCTAGCTGCTCGTAATATACTCATCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGG AAGATGACCCAGAAGCTGCTTACACAACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATA CCGGAAGTTCACATCAGCCAGTGATGCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCG TACTGGGAGATGTCCTTCCAGGACGTAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAG CTGCCTTGTATCAGCTGATGCTGGACTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCAT CCTGGATAAGCTGATCCGTAATCCCAGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTG GACCAAAGTAACATTGACATTTCAGCGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAG GCATTTTCACGGGTGTGGAGTACAGCTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGT TACAGTTGTGGGGCCTCAAAAGAAGATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCT GTGTAAGGTACCA
Citation	Takahashi H, Shintani T, Sakuta H, Noda M. CBF1 controls the retinotectal topographical map along the anteroposterior axis through multiple mechanisms. Development. 2003 Nov;130(21):5203-15. Epub 2003 Sep 3.
Copyright	Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors.
Comments	Authors indicated this sequence was the probe.

Stage

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13-18

stage 18

Retina

31-34

stage 34

Retina

Entry 6

GEISHA Id	EPH3A.Schulte.2005	Data Source	Publication
Complete cDNA Template Probe	show GCTCTGCTCGCGCGCTGCTGCCCCGCCGACATGGACCGCCGCCGCCTGCCGCTGCTGCTGCTCTGCGCTGCCCTCGGCT CCGCCGGGCGTCTGAGCGCCCGCCCCGGCAACGAAGTTAATCTGCTGGATTCAAAAACAATTCAAGGGGAGCTGGGCTG GATCTCCTACCCATCACATGGGTGGGAAGAGATTAGTGGTGTTGATGAGCATTATACTCCAATCAGAACTTACCAAGAG AGCAATGTTATGGATCACAGTCAAAACAATTGGCTGCGAACAAACTGGATTCCACGCAATTCAGCGCAGAAGATATATG TGGAGCTCAAGTTTACCTTGAGGGACTGCAATAGTATCCCTCTAGTTCTGGGCACTTGCAAAGAGACTTTCAATCTGTA TTACATGGAATCCGATGATGACCATTTGGCAAAGTTCAGAGAGCACCAATTTACGAAGATTGACACCATTGCGGCTGAT GAGAGCTTCACCCAGATGGATCTTGGGGACCGGATTCTCAAGCTGAATACCGAAGTCCGCGAGGTGGGACCTGTTAGTA AGAAGGGCTTTTACTTGGCTTTCCAAGATGTAGGTGCATGTGTTGCCTTAGTCTCGGTGCGAGTGTACTTCAAGAAGTG CCCTTTCACTGTCAAGAACCTCGCCATGTTTCCAGATACAGTTCCTATGGACTCCCAGTCCCTGGTGGAGGTGCGGGGT TCTTGTGTCAATCATTCCAAGGAGGAAGAGCCACCCAAGATGTACTGCAGCACGGAAGGAGAATGGCTAGTGCCCATAG GGAAGTGCTTGTGTAATGCTGGCTATGAAGAGAGAGGCTTTGCGTGCCAAGCTTGTCGACCTGGGTTCTATAAAGCTTC TGCTGGCAATGTGAAGTGTGCCAAATGCCCACCTCACAGCTCTACCTATGAAGATGCATCTCTGAACTGCAGGTGTGAA AAGAATTACTTTCGCTCTGAGAAAGACCCTCCATCCATGGCTTGCACCAGACCACCATCTGCTCCAAGAAACGTTATTT CTAACATCAATGAGACATCTGTTATTCTGGACTGGAGCTGGCCTCTTGATACAGGAGGTCGAAAAGATGTCACTTTCAA CATCATTTGCAAAAAATGTGGAGGAAGCAGCAAGATATGTGAGCCTTGCAGTGACAACGTACGGTTCTTACCCCGTCAG ACTGGCCTCACCAACACCACGGTGACAGTAGTGGACCTTTTGGCACATACCAATTACACTTTTGAGATTGATGCAGTCA ACGGGGTATCTGACTTGAGTACACTTTCGAGACAATTTGCTGCTGTCAGCATCACGACTAATCAGGCTGCGCCATCCCC CATCACAGTGATAAGGAAAGACCGGACATCCAGGAACAGCGTGTCTCTGTCTTGGCAGGAGCCTGAGCACCCAAATGGA ATCATCTTGGACTACGAGGTCAAATACTACGAAAAGCAGGAACAAGAGACAAGCTATACTATTCTGAGAGCCAAAAGCA CTAACGTTACTATCAGCGGCCTCAAACCTGATACCACCTACGTCTTCCAAATTCGAGCCCGAACTGCAGCTAGATATGG GACAAGCAGCCGCAAGTTTGAATTTGAAACCAGTCCAGATTCATTCTCCATTTCCAGTGAAAATAGCCAGGTCGTTATG ATTGCCATTTCAGCTGCAGTTGCCATCATTCTCCTCACGGTTGTTGTGTACGTCTTGATTGGGAGATTCTGCGGATACA AGAAGTCTAAACATGGTACCGATGAGAAAAGACTACATTTTGGGAATGGCCACTTAAAACTCCCAGGCCTGAGAACTTA TGTAGATCCACATACGTACGAAGATCCCAATCAAGCTGTACATGAATTTGCCAAGGAACTAGATGCTTCTAATATATCA ATTGATAAAGTTGTTGGAGCAGGGGAATTTGGAGAAGTGTGCAGTGGGCGCCTGAAGCTGCCTTCTAAAAAGGAAATTT CAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCATGGG GCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGAATAC ATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATGCTTC GTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATACTCAT CAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTACACA ACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGTGATG CGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGGACGT AATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCTGGAC TGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAATCCCA GCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTTCAGC GTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTACAGC TCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAGAAGA TTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGTTGCT GAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTTCTTT GCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTAAAAA TAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAAATTT C
Citation	Schulte D, Peters MA, Sen J, Cepko CL. The rod photoreceptor pattern is set at the optic vesicle stage and requires spatially restricted cVax expression. J Neurosci. 2005 Mar 16;25(11):2823-31.
Copyright	Copyright © 2012 by the Society for Neuroscience
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205430.2 )

Stage

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Location (click to highlight)

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stage 31

Diencephalon

Entry 7

GEISHA Id	EPHA3.Jayasena.2005	Data Source	Publication
Complete cDNA Template Probe	show ATTTCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCA TGGGGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGA ATACATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATG CTTCGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATAC TCATCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTA CACAACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGT GATGCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGG ACGTAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCT GGACTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAAT CCCAGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTT CAGCGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTA CAGCTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAG AAGATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGT TGCTGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTT CTTTGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTA AAAATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAA ATTTC
Citation	Jayasena CS, Flood WD, Koblar SA. High EphA3 expressing ophthalmic trigeminal sensory axons are sensitive to ephrin-A5-Fc: implications for lobe specific axon guidance. Neuroscience. 2005;135(1):97-109.
Copyright	Copyright © 2005 IBRO. Published by Elsevier Ltd. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Jayasena et al., 2005.

Stage

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Location (click to highlight)

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19-20

stage 20

Cranial Ganglia
Peripheral Nervous System

TG: trigeminal ganglion

all

Entry 8

GEISHA Id	EphA3.Iwamasa.1999	Data Source	Publication
Complete cDNA Template Probe	show `GAGATTAGTGGTGTTGATGAGCATTATACTCCAATCAGAACTTACCAAGAGAGCAATGTTATGGATCACAGTCAAAACA ATTGGCTGCGAACAAACTGGATTCCACGCAATTCAGCGCAGAAGATATATGTGGAGCTCAAGTTTACCTTGAGGGACTG CAATAGTATCCCTCTAGTTCTGGGCACTTGCAAAGAGACTTTCAATCTGTATTACATGGAATCCGATGATGACCATTTG GCAAAGTTCAGAGAGCACCAATTTACGAAGATTGACACCATTGCGGCTGATGAGAGCTTCACCCAGATGGATCTTGGGG ACCGGATTCTCAAGCTGAATACCGAAGTCCGCGAGGTGGGACCTGTTAGTAAGAAGGGCTTTTACTTGGCTTTCCAAGA TGTAGGTGCATGTGTTGCCTTAGTCTCGGTGCGAGTGTACTTCAAGAAGTGCCCTTTCACTGTCAAGAACCTCGCCA`
Citation	Iwamasa H, Ohta K, Yamada T, Ushijima K, Terasaki H, Tanaka H. Expression of Eph receptor tyrosine kinases and their ligands in chick embryonic motor neurons and hindlimb muscles. Dev Growth Differ. 1999 Dec;41(6):685-98.
Copyright	Copyright © 1999 John Wiley & Sons, Inc.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Iwamasa et al.1999.