Geisha

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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXD13
homeobox D13

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	HOXD13
Official Full Name	homeobox D13
CGNC ID	7049
also known as	chox-4.8, chox-4G, homeobox protein Hox-D13\|Hox D13\|homeobox protein Hox-4.8\|homeobox protein Hox-4G\|homeobox protein hoxd13, Homeobox protein Hox-D13, Hox-D13, Chox-4.8, Chox-4G
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205434
Polypeptide	NP_990765

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3239	ENSG00000128714	MIM:113200	MIM:142989
Mouse	15433	ENSMUSG00000001819	All phenotypic alleles (15):Spontaneous(2) Targeted, knock-out(9) Targeted, other(4)	MGI:96205
Xenopus	100498102, 399207			482319
Zebrafish	30407	ENSDARG00000059256	ZDB-GENE-990415-119	ZFIN:ZDB-GENE-990415-119

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	396415
Ensembl Gene
KEGG	gga:396415

Entry 1

GEISHA Id	ChEST414kL5	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show AAACCCTNAAGGGCGAAATGGNGCNCCACCGCGGGGGGGGCCGCGGNTCGCGATNTGGTTTCNCNNCCNTTTTNNNGNA GGATNAGAAAATAGTCNCCNAACNGAAAGACNACGTNNCCTGATCGANCCCTTGCGGACAGNGGCNGATANACAACCTC CGATTTACGACCAGCTGCGGACTTTTGGAAAGACTTGNNAATATATTTAATATTTTTTTTTCTCTTCTCCTTCCAGCGG TGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGAGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAGCC GTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTAAAAAAAAAAAATATTAATATTAATTATATTTTCTATCCTTCCCTCT AGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGAGGGG ACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAACGCG AGTGAGCGGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCCTTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGGAAG CAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGCGGG CAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATGCTC CCCACAGCAGCGCCCGGGGGTCCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGTGC GCACGTACCTCCGTGCGGACCCCGCGCTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTCA NTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAAAGATTCGTCTCAAAAAAAGAATTCGATATCAAGCTTAT CGATACCCTCGACCTCGAGGGGGCCCCNTN
Comments	No expression detected at or before stage 7.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

stage 9

stage 10

Anterior Intestinal Portal
Anterior Neuropore
Extraembryonic Mesoderm
Forebrain
Neural Plate/Tube
Notochord
Sinus Venosus
Unlabeled
extraembryonic endoderm

Stages 6 & 7.

13-18

stage 16

stage 17

Hindgut
Leg Mesenchyme

19-24

stage 19

stage 23

stage 24

Hindgut
Leg Mesenchyme
Tail
Wing Mesenchyme

25-29

stage 29

Hindgut
Leg Mesenchyme
Tail
Wing Mesenchyme

Entry 2

GEISHA Id	Hoxd-13.Reid.2002	Data Source	Publication
Complete cDNA Template Probe	show GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
Citation	Reid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
Copyright	Copyright © 2007 UBC Press
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205434).

Stage

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Location (click to highlight)

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31-44

stage 35

stage 44

Dermis
Spinal Cord
Surface Ectoderm
Vertebrae

Comparison of several genes

Entry 3

GEISHA Id	HOXD13.Gamer.2001	Data Source	Publication
Complete cDNA Template Probe	show GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
Citation	Gamer LW, Cox KA, Small C, Rosen V (2001). Gdf11 is a negative regulator of chondrogenesis and myogenesis in the developing chick limb. Dev Biol. 2001 Jan 15;229(2):407-20.
Copyright	Copyright © 2000 Academic Press. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205434).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Wing

Entry 4

GEISHA Id	HOXD13.Theodosiou.2007	Data Source	Publication
Complete cDNA Template Probe	show GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
Citation	Theodosiou NA, Hall DA, Jowdry AL. Comparison of acid mucin goblet cell distribution and Hox13 expression patterns in the developing vertebrate digestive tract. J Exp Zool B Mol Dev Evol. 2007 Jul 15;308(4):442-53.
Copyright	Copyright © 1999-2010 John Wiley & Sons, Inc. All Rights Reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205434.1)

Stage

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Location (click to highlight)

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25-26

stage 26

Endoderm
Hindgut
Leg
Mesoderm
Splanchnic Mesoderm
Tail

Entry 5

GEISHA Id	HOXD13.Dunn.2011	Data Source	Publication
Complete cDNA Template Probe	show ATTTGGTTTCAGAACAGGAGGGTGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTT GCGGACAGTGGCGGATATACAACCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATT TTTTTTTCTCTTCTCCTTCCAGCGGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCT CGGTGGAAGGGAGCGCCGACAAGCCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTAAAAAAAAAAAATATTAATATT AATTATATTTTCTATCCTTCCCTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTT AAATGCTTATCTCTTGGGGGAGGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGA TNTGGTGTACTGGTCGGAAAACGCGAGTGAGCGGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCCTTGCCGGAGTCCG CACGGGGCTCCGCGGATGTCGGAAGCAGCGGCTCCGGAAGGGAATCGTTTGCACTGCAGTGGGATCGCTCTTTTTATTC TTTATGACTTTGATTTTGCTGGCGGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCG TTGGATCCGAAGGGGCAGCGATGCTCCCCACAGCAGCGCCGGGGGGTCCCTCCGGGCGCCCCGGTCCATCCCGTCCGTC CCGTCCGTCCCGTCCGAGGTGCGCCGTTCTTCGTGCGGACCC
Citation	Dunn IC, Paton IR, Clelland AK, Sebastian S, Johnson EJ, McTeir L, Windsor D, Sherman A, Sang H, Burt DW, Tickle C, Davey MG. The chicken polydactyly (Po) locus causes allelic imbalance and ectopic expression of Shh during limb development. Dev Dyn. 2011 May;240(5):1163-72.
Copyright	Copyright © 2011 Wiley-Liss, Inc.
Comments	Probe for HOXD13 was obtained from chicken EST ChEST414k15.

Stage

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25-27

stage 27

Leg

control embryo

Entry 6

GEISHA Id	HOXD13.Fisher.2008	Data Source	Publication
Complete cDNA Template Probe	show GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
Citation	Fisher ME, Clelland AK, Bain A, Baldock RA, Murphy P, Downie H, Tickle C, Davidson DR, Buckland RA. Integrating technologies for comparing 3D gene expression domains in the developing chick limb. Dev Biol. 2008 May 1;317(1):13-23. Epub 2008 Feb 7.
Copyright	Copyright © 2008 Elsevier Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205434.1 ).

Stage

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19-22

stage 22

Limb Buds

Entry 7

GEISHA Id	Hoxd-13.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show `CTGCAGGATGTCCAACGGGGTTGGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCC GTGGAAAAGTACATGGACGTCTCCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAG TGTCCTCCTACCAGGGCTATACAAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGG GGAACCGAGACACGAAACGTACATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTG TACTGTGCCAAAGATCAGACACAGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCG AGATGTGCGTCTACCGGCGCGGGAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAG`
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Nelson et al. 1996.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 19

stage 23

Leg
Wing

25-30

stage 25

stage 27

Leg
Wing

31-44

stage 44

Entry 8

GEISHA Id	Hoxd13.Yakushiji-Kaminatsui.2018	Data Source	Publication
Complete cDNA Template Probe	show GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
Citation	Nayuta Yakushiji-Kaminatsui, Lucille Lopez-Delisle, Christopher Chase Bolt, Guillaume Andrey, Leonardo Beccari, Denis Duboule. Similarities and differences in the regulation of HoxD genes during chick and mouse limb development. PLoS Biol. 2018 Nov 26;16(11):e3000004. DOI: 10.1371/journal.pbio.3000004.
Copyright	Copyright © 2018 Yakushiji-Kaminatsui et al.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205434.1).