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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PRTG
protogenin

Gene

Official Symbol	PRTG
Official Full Name	protogenin
CGNC ID	3210
also known as	protogenin\|protogenin homolog (Gallus gallus), Protogenin, PRTG
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001030548
Polypeptide	NP_001025719
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.29783

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	283659	ENSG00000166450		MIM:613261
Mouse	235472	ENSMUSG00000036030	All phenotypic alleles (5):Targeted, other(2) Gene trapped(3)	MGI:2444710
Xenopus	100496178			922462
Zebrafish	563834, 572241		ZDB-GENE-061204-4, ZDB-GENE-060302-1	ZFIN:ZDB-GENE-061204-4, ZFIN:ZDB-GENE-060302-1

Gene Ontology

Molecular Function
Biological Process	multicellular organismal development
Cellular Component	integral component of membrane

Links to other databases

Entrez Gene	415407
Ensembl Gene	ENSGALG00000004361
KEGG	gga:415407

Entry 1

GEISHA Id	PRTG.Vesque.2006	Data Source	Publication
Complete cDNA Template Probe	show ATGCGGAGAGTAGGGCCGGGACGGGCGCGCCGGGGCCGCTCCGTCCGCCCCCTGTCTCCTCCCCTCGGCCGCTGACCGC TCTCTCGCGGCGGCCGGCGGGGCATGCCAGCCGCGTCCCGCTGCATGGCGCTGCTCCGGGCGCTGCTCGGGGCGCTGCT CCTCCCGATGCCAGGAGTGTGGTGCTTTAGCGAGCTGTTTTTTGTGAGAGAGCCTCAAGATGTGACTGCCTCCAGGAAG GATGCGGTGGTGTTAGACTGCCAGGCCCGTGGGGAAGCTCCTATAACTGTCACGTGGCTGAAAAATGGAGGCAAAGTGT CTGAAAATGAAAGGATCTACACCTTATCCAATGGCTCTTTGTACATCAGTGAGGTGGAAGGAAGGAAAGGAGAGCAGTC TGATGAAGGATTTTACCAGTGCTTGGCTCTGAACAAGTACGGAGCCATTCTCAGTCAAAAAAGTCACCTTACGCTAGCA ACCATTTCTGCTTTTGAAGTTCAGCCACTTTCAACTGAGGTTCAAGAAGGTGGAGTAGCTCGATTTACCTGTAAAATAG CAGCAAACCCTCCTGCTGTTGTGACATGGGAAGTGAATCGAACAACTTTGCCTTTATCTATGGACAGGATAACTGCTCT ACCTACAGGAGTTCTTCAGATCTATGGTGTTGAACAGAAGGATGCAGGAAATTACCGATGTGTTGCCACAACGATAACC AGTAGACGTAAGAGTGCTGAAGCAACGCTGAATGTTATTCCAGCTTCAGACTTAAAGCCTTTTCACAAACCAGCTATAA TAGCAGGTCCTCAAAACGTTACAGCATCTCTTCATCAAACTGTCATACTGGAGTGTGTAGCCACAGGGAATCCAAAGCC AATCATCTCATGGAGCCGGTTAGACCATAAGTCCATTGATGTCTTCAATACCCGTGTCCTTGGAAATGGGAACCTCATG ATCTCTGATGTGAAGGTGCAGCATGCAGGCGTATATGTCTGTCGAGCCACTATTCCAGGCACACGAAACTTCACAGTAG CAATGGCAACTCTCACTGTGCTGGCTCCTCCTTCATTTGTGGAATGGCCGGAGAGTTTAACAAGGCCTAGAGCTGGTAC TGCTCGTTTTGCCTGTCAGGCAGAAGGAATTCCTGCCCCCAAAATTTCATGGTTGAAAAATGGAAGGAGAATACACTCC AATGGCAGAATTAAAATGTACAACAGTAAATTGGTGATTAACCAGATCATTCCTGAAGATGATGCCATTTATCAGTGCA TGGCTGAGAATAGTCAGGGATCTGTACTCTCCAGGGCCAGGCTTACTGTAGTTATGTCGGAAGATAGACCCAGCGCACC TTATAACGTCCATGCTGAAACGATGTCAAGCTCAGCGATCCTGCTAGCATGGGAGAGGCCACTCTATAATTCAGACAAA GTGATTGCATACTCCGTGCATTACATGAAAGCAGAAGGTTTAAATAATGAAGAGTACCAAGTGGTCATCGGAAATGATA CAACTCATTACATTATTGATGACTTGGAACCAGCCAGCAACTATACCTTCTATATTGTAGCTTACATGCCTCTGGGAGC CAGTCAGATGTCAGATCATGTGACTCAGCACACCCTTGAGGATGTTCCCTTGAGAGCTCCTGAAATTAGTTTGACAAGC CGGAGTCCTACAGATATTCTTATCTCTTGGTTGCCAATTCCTGCAAAATACAGGAGAGGCCAGGTGGTGCTGTATCGTC TGTCTTTCCGCCTCAGCACAGATAGCAAAATCCAAGTCTTGGAGCTTCCAGGAACTTCAGATGAGTACCTCCTTGAAGG GCTGCGGCCTGACAGTGTCTACTTGGTTCGTATTACTGCTGCAACAAGGATTGGCTGGGGAGAGGCATCTTTGTGGACC TCCCACCGAACTCCAAAAGCAACAAGTGTGAAAGCACCGAAGTCTCCTGAGCTGCGTTTGGAACCAATAAATTGTACGA CTATTACAGTACAGTGGCAGCAGGACTCTGATGACACTGCAGCTATTCAAGGGTACAAGTTGTATTACAAAGAAGAAGG CCAGCAGGAAAATGGACCAATTTTGTTGGATGCCAGTGATCTTGAGTATACTGTCAGTGGTTTAGATCCTAGAAGAAAG TATCATGTAAGGCTGCTGGCATATAACAATATGGAAGAAGGTTATCAAGCAGACCAAACAGTCAGCACTCCAGGATGTG TCTCTGTCCGTGATCGCATGGTGCCACCACCACCACCCCCTCACCATCTCTATGCTAAAGCTAACACTTCATCTTCTAT CTACCTTCACTGGGGAAAGCCTGCCTTTACATCTGCACAGGTCATTAATTACACAATCCGCTGCAACCCAGTAGGACTG CAGAATGCATCTCTGGTTCTGTACCTTCAAACGTCAGAGACTCACATGTTAGTCCAGGGTCTTGAACCAAAAACCATGT ATGAATTTGCAGTTCGGTTGCATGTGGACCAGCTCTCTAGTCCCTGGAGTCCAGTAGTCTATCATACTACCCTTCCAGA AGCACCATCTGGCCCTCCAGTAGGAGTGAAGGTGACTTTGATAGAAGATGATACTGCTTTGGTTTCCTGGAAGCCACCT GATGGTCCTGAAACAGTTGTTACACGATACACTATACTATATGCATCCAGGAAGTCTTGGATTGCTGGGGAATGGCAAG TGTTGCACAGAGAAGGAGCAATGACTATGGCTTTGCTGGAAAATCTTGTAGCAGGAAACGTCTACTTGGTCAAAATAGC AGCCTCCAATGAAGTGGGAGAAGGACCCTTCTCAAACGTGGTGGAACTTGCTGTCCTGCCAAAGGAGACATCAGAGTCT AATCAGAGGCCTAAACGCTTGGATTCAGGAGATTCCACAGCTTATTCTGACTATTACCATCTGGACCAAAAATCAATGA CTGGCATTGTTGTTGGGGTTTGCATAGCCTTGACCTGCATCCTTATCTGCATCCTGATCTTAATTTATCGCAGTAAAGC CAGGAAAACATCTGCTCCTAAACCTGTGCAGCAAAGCACTGACCAGCTGTCACATACCAACATCTCATTAGCCAGTGCT AATGAGGTGGAGAAGAGCATTGATGGAATCGCAGAGAATGCAGAATCCTTATTGCCAATGATAGTGGGAAACAGCTTCA TTGATGCTAAGGGGGGATCCGATCTTATTATTAACAGCTATGGGCCTGTCACAAAGGCCAACTGCAAGAAGAGGTGGCT ATTCTTCCAGGATACTAAGAAGATGAAGACTGAGGAGCCTCAGAGAAGATTTGTCCAAGCAGTGTGTCTTTATCAGCCA GGTACCACTGTGCTGATAAGTGAGGATGATTCCCCCAGCTCTCCTGGCCAACAGTCTAACTTCCAGGTGCCGTTCAGTA TTGCTGCTGATACAGAGCATTCAGCCAACAGTGAGGGAAGTCATGAGACTGGTGACTCTGGAAGATTTTCACATGAGTC CAATGATGAGCTACACCTCTCCTCTGTAACAAGTGCCACTCCTTGTGCTACCAGTCATTTTGTAAGCAGTGACTTGGGT AAGAATGTGATGAATTCTACCATAAGTGACAGCAAAGAATCTCCGCTGCTGTTTGCTACTGACCAGCCTGCTACCTCAC CTCTTCAGATACACTCTGCAGTGCAAAACTGACACCCTTAGGACCACATCATACATTCTTACAGTGTATGTCTGTTCGA AGGACAATGAACAGGGAGCCAAAGTTATATTGTGGAAAGCTTGACTAACTCAACAGGTGATCCCATATTTCTGTTGAAT GGGTTTTGTTTTTTTGTTTGTTTAACTCATTCATTTTGAATGTTCGATGGTCAACAAATGTGAAAGGACAGAGAAGATT TCTGACTAGAGTTGAAAATATGTCACTGGAGCAAAGGGAAGTCTTTTGGCTCTTTTGCTGACTATCTACCTCAGTTTGC CGAGAGGTGAACTCTGAAAGACAACTGCTTTACCTCGTTTGTGTTGTATTNGGTCTCAGCTATGGAACTGATGATACTT CCTAGTAGTNTTTAGGTTTCTTTTTTTTTCCCAGTTGCGTATAGAATGCGTGTGTTNGGGGGGTGTGTATGCTCAGTAA TCAGGGAGTTGTATAGGTAGATGAACAAGATTGTTTAGCTGAAGCTCTGTCTTTAAAAAGAAGGATATCTCAGAATAGA AAATGTAATGTTTTAATGTGGCGGATCTAAACAGTGTTCAAAAATGCAGAAACTGGAGTTGGTGCTTCCGTTTGTACAG CCACATGAAATCTTTTGTACCTCTTGATTTCTCATAGCTCCAGGAAGCCTAGGACAGTGCCTTTCCCCAGAAACTTGTG CCATCGACTGCTGACAGGATGTATCCTTACAGCACTAGGGCACATTGAGTTCCCCACGGTGACAAATACTGTCAATTTA TTGACAATTAATGCTAAAAAGCATGGCAAAATGAAGAAGTATTCAGTATGTCCAAGCAGTTTGACTCTGCCTAAGAGAT ATGGAATAGATGATAATGCTGAGTACTCTGGTGTTGCAGTACTTCTTAGCAATGGTGCCTTGCATTATATATAATGAAA TTACTGATTTGCCTTATGCCTTTTTAGTATTTATAAAATTGCTTTGGATTTTGGAAAGATGCCTTAAATGCTTCTTAGA TGTAAACTGCGTTATCAGCTCATAGTTTGCTTTTTACGCAGCTTTGAATGCTGATAAGCACTGCTAGCATCATGGTATG TCTCAGAACTGTTTTTGGGATGCAACCCTGCTCCTCGCCTTTGCCTAGTATGCTGTTAGACAGGAATTTTAGCTCAGGG AGTGACATAAGCCCATCTAAAACTCTACTATGAGAAATAAGAAGCCAGAGCTTTAGTTGAAGAGTCTGTTGAAGGACAC AAGTAGTGCTATTGCCTTGAACCCATACAATTCCTGTTTTATACTACCTCTTTTAAAAGTTATTCTAGTGTGTTGTGGT GCTTGTTTTTTTGTTCATTTGTTTGTTTTTCCTGTACTCAGGGAACAGTTTGTTACTTTGAGCTGCCTCATGAAAATGT GGAGCAAACTGACAGGGTATCATGTTTTATTTCTTAATGGGGGTGGGAG
Citation	Vesque C, Anselme I, Couvé E, Charnay P, Schneider-Maunoury S. (2006) Cloning of vertebrate Protogenin (Prtg) and comparative expression analysis during axis elongation. Dev Dyn. 2006 Oct;235(10):2836-44.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	According to the authors: To isolate the chicken and zebrafish orthologues of Prtg, we designed two degenerate oligonucleotides, prtg F corresponding to amino acids 383-389: GA(CT)GA(CT)GC(N)AT(ACT)TA(CT)CA(AG)TG and prtg R corresponding to amino acids 485-492: GGCAT(AGTA(N)GC(N)AC(AGT)AT(AG)TA.

Stage

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Comments (click to highlight)

4-6

stage 4

Hensen's Node
Hindbrain
Primitive Streak

7-12

stage 8

Neural Plate/Tube
Paraxial Mesoderm
Somites

stage 13

Dermomyotome
Midbrain
Neural Plate/Tube
Somites

roof plate
sub-lip domain

Entry 2

GEISHA Id	Protogenin.Toyoda.2005	Data Source	Publication
Complete cDNA Template Probe	show `ATCTGCTCCTAAACCTGTGCAGCAAAGCACTGACCAGCTGTCACATACCAACATCTCATTAGCCAGTGCTAATGAGGTG GAGAAGAGCATTGATGGAATCGCAGAGAATGCAGAATCCTTATTGCCAATGATAGTGGGAAACAGCTTCATTGATGCTA AGGGGGGATCCGATCTTATTATTAACAGCTATGGGCCTGTCACAAAGGCCAACTGCAAGAAGAGGTGGCTATTCTTCCA GGATACTAAGAAGATGAAGACTGAGGAGCCTCAGAGAAGATTTGTCCAAGCAGTGTGTCTTTATCAGCCAGGTACCACT GTGCTGATAAGTGAGGATGATTCCCCCAGCTCTCCTGGCCAACAGTCTAACTTCCAGGTGCCGTTCAGTATTGCTGCTG ATACAGAGCATTCAGCCAACAGTGAGGGAAGTCATGAGACTGGTGACTCTGGAAGATTTTCACATGAGTCCAATGATGA GCTACACCTCTCC`
Citation	Toyoda R, Nakamura H, Watanabe Y. Identification of protogenin, a novel immunoglobulin superfamily gene expressed during early chick embryogenesis. Gene Expr Patterns. 2005 Aug;5(6):778-85.
Copyright	Reprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
Comments	The sequence below was obtained from NCBI using the GenBank Accession No. (AB185923) and primers provided in the publication: protogenin forward primer, 5'-ATCTGCTCCTAAACCTGTGCA-3' (nucleotides 30123032); and reverse primer, 5'-AAGGAGTGGCACTTGTTACAGAG-3' (nucleotides 35203498).