Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

MSX1
msh homeobox 1

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	MSX1
Official Full Name	msh homeobox 1
CGNC ID	11159
also known as	CHOX-7, GHOX-7, HOX-7, homeobox protein MSX-1\|Hbox 7\|homeobox protein GHOX-7\|homeobox protein Hox-7\|msh homeo box homolog 1\|msh homeobox 1-like protein\|msh homeobox homolog 1, Homeobox protein GHOX-7, Hox-7, CHOX-7 , Msx1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205488
Polypeptide	NP_990819
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.1905

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4487	ENSG00000163132	MIM:608874	MIM:142983
Mouse	17701	ENSMUSG00000048450	All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4)	MGI:97168
Xenopus	394692, 100125666, 399464			490377
Zebrafish	30527	ENSDARG00000007641	ZDB-GENE-980526-312	ZFIN:ZDB-GENE-980526-312

Gene Ontology

Molecular Function	p53 binding, more...
Biological Process	activation of meiosis, anterior/posterior pattern specification, apoptotic nuclear changes, more...
Cellular Component	nucleus, transcription factor complex

Links to other databases

Entrez Gene	396484
Ensembl Gene	ENSGALG00000015013
KEGG	gga:396484

Entry 1

GEISHA Id	Msx1.Kamimura.2004	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACACGGGGCCGCCCTGCA TGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGCC CGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCTG CCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCCC CTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACTT CCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAGC CCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCACA AGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGTA CCTGTCCATCGCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAAC CGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCTG CTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCCA GCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGGC CGAGCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTGCC TGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCAGCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAGCC CAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGTGG CCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTATC ATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Kamimura, M, Matsumoto, K, Koshiba-Takeuchi, K, Ogura, T. Vertebrate Crossveinless 2 Is Secreted and Acts as an Extracellular Modulator of the BMP Signalling Cascade. Dev Dyn. 2004 Jul;230(3):434-45.
Copyright	Wiley-Liss, Inc. 2004
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-17

stage 17

Endocardium

Entry 2

GEISHA Id	Msx1.Wu.2006	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACACGGGGCCGCCCTGCA TGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGCC CGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCTG CCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCCC CTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACTT CCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAGC CCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCACA AGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGTA CCTGTCCATCGCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAAC CGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCTG CTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCCA GCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGGC CGAGCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTGCC TGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCAGCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAGCC CAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGTGG CCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTATC ATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Wu P, Jiang TX, Shen JY, Widelitz RB, Chuong CM. Morphoregulation of avian beaks: comparative mapping of growth zone activities and morphological evolution. Dev Dyn. 2006 May;235(5):1400-12.
Copyright	Copyright © 2006 Wiley-Liss, Inc.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-30

stage 26

stage 27

stage 28

stage 29

Nasal Placcode/Nerve

Beak
Frontal Nasal Mass,
Frontal Nasal Mass, Beak

stage 31

Nasal Placcode/Nerve

Beak
Frontal Nasal Mass,

Entry 3

GEISHA Id	MSX1.Shigetani.2000	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACACGGGGCCGCCCTGCA TGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGCC CGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCTG CCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCCC CTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACTT CCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAGC CCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCACA AGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGTA CCTGTCCATCGCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAAC CGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCTG CTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCCA GCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGGC CGAGCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTGCC TGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCAGCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAGCC CAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGTGG CCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTATC ATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Shigetani Y, Nobusada Y, Kuratani S. (2000). Ectodermally derived FGF8 defines the maxillomandibular region in the early chick embryo: epithelial-mesenchymal interactions in the specification of the craniofacial ectomesenchyme. Dev Biol. 2000 Dec 1;228(1):73-85.
Copyright	Reprinted with permission from Elsevier. Copyright © 2000 Academic Press. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 17

Pharyngeal Arches and Clefts

Double Labeled
Mandibular Mesenchyme
Maxillary Mesenchyme

19-24

stage 19

stage 20

stage 24

Pharyngeal Arches and Clefts

Double Labeled
Figure 3 compares expression patterns of mesenchymally expressed homeobox genes (Msx1, Fgf8, Dlx1, and Barx1) in chick embryo at HH stages 13, 15, 17, 19, 20, 23 and 24.
Mandibular Arch
Premandibular-Maxillary Transitional Area

Entry 4

GEISHA Id	Msx1.Holleville.2007	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACACGGGGCCGCCCTGCA TGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGCC CGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCTG CCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCCC CTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACTT CCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAGC CCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCACA AGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGTA CCTGTCCATCGCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAAC CGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCTG CTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCCA GCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGGC CGAGCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTGCC TGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCAGCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAGCC CAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGTGG CCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTATC ATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Holleville N, Matéos S, Bontoux M, Bollerot K, Monsoro-Burq AH. Dlx5 drives Runx2 expression and osteogenic differentiation in developing cranial suture mesenchyme. Dev Biol. 2007 Apr 15;304(2):860-74.
Copyright	Reprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
Comments	Authors indicated the probe was described in Monsoro-Burq et al, 1995, who said: Chick Msxl cDNA, a gift of Dr Susuki, was digested by Pstl to generate a fragment specific for Msxl, located 3 to the homeobox. As information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# NM_205488.1)

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-38

stage 38

Face Mesenchyme

Osteoblasts

Entry 5

GEISHA Id	MSX1.Streit.2002	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACACGGGGCCGCCCTGCA TGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGCC CGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCTG CCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCCC CTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACTT CCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAGC CCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCACA AGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGTA CCTGTCCATCGCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAAC CGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCTG CTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCCA GCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGGC CGAGCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTGCC TGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCAGCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAGCC CAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGTGG CCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTATC ATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Streit, A. Extensive cell movements accompany formation of the otic placode. 2002 DEVELOPMENTAL BIOLOGY 249(2), 237-54.
Copyright	"Reprinted from Developmental Biology, 249(2), Streit A., Extensive cell movements accompany formation of the otic placode, 237-54, Copyright (2002), with permission from Elsevier". Copyright © (2002) Elsevier B.V. All rights reserved.
Comments	According to the authors, "cDNAs for msx1 were kind gifts(see text. As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Early Embryo
Lateral Plate Mesoderm
Neural Crest
Surface Ectoderm

double label

7-12

stage 7

stage 8

Ectoderm
Lateral Plate Mesoderm
Neural Crest
Neural Plate/Tube
Somatic Mesoderm
Splanchnic Mesoderm
Surface Ectoderm

double label

31-44

stage 44

Entry 6

GEISHA Id	MSX1.Allen.2001	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Allen SP, Bogardi JP, Barlow AJ, Mir SA, Qayyum SR, Verbeek FJ, Anderson RH, Francis-West PH, Brown NA, Richardson MK (2001). Misexpression of noggin leads to septal defects in the outflow tract of the chick heart. Dev Biol. 2001 Jul 1;235(1):98-109.
Copyright	Copyright © 2001 Academic Press. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

Heart
Outflow Tract

Atrioventricular Canal

stage 25

Heart
Outflow Tract

Atrioventricular Canal

Entry 7

GEISHA Id	MSX1.Streit.1999	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Streit A, Stern CD. Establishment and maintenance of the border of the neural plate in the chick: involvement of FGF and BMP activity. Mech Dev. 1999 Apr;82(1-2):51-66.
Copyright	Copyright © 1999 Elsevier Science Ireland Ltd. All rights reserved
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Primitive Streak

4-6

stage 4

stage 5

Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak

7-8

stage 8

Lateral Plate Mesoderm
Neural Plate/Tube

Entry 8

GEISHA Id	MSX1.Stevens.2003	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Stevens CB, Davies AL, Battista S, Lewis JH, Fekete DM. Forced activation of Wnt signaling alters morphogenesis and sensory organ identity in the chicken inner ear. Dev Biol. 2003 Sep 1;261(1):149-64.
Copyright	Copyright © 2003 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-30

stage 27

stage 31

Entry 9

GEISHA Id	MSX1.Holleville.2003	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Holleville N, Quilhac A, Bontoux M, Monsoro-Burq AH. BMP signals regulate Dlx5 during early avian skull development. Dev Biol. 2003 May 1;257(1):177-89.
Copyright	Copyright © 2003 Elsevier Science (USA) All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-38

stage 38

Head Mesenchyme

Bony Plate

Entry 10

GEISHA Id	MSX1.Taneyhill.2005	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Taneyhill LA, Bronner-Fraser M. Dynamic alterations in gene expression after Wnt-mediated induction of avian neural crest. Mol Biol Cell. 2005 Nov;16(11):5283-93. Epub 2005 Aug 31.
Copyright	Copyright 2004, MBC Online by The American Society for Cell Biology.
Comments	Insufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-16

stage 16

Neural Plate/Tube

Entry 11

GEISHA Id	MSX1.McLarren.2003	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	McLarren KW, Litsiou A, Streit A. DLX5 positions the neural crest and preplacode region at the border of the neural plate. Dev Biol. 2003 Jul 1;259(1):34-47.
Copyright	Copyright © 2003 Elsevier Science (USA). All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

stage 7

Neural Plate/Tube

Neural Folds

Entry 12

GEISHA Id	MSX1.Riley.2003	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Riley BB, Phillips BT. Ringing in the new ear: resolution of cell interactions in otic development. Dev Biol. 2003 Sep 15;261(2):289-312. Review.
Copyright	Copyright © 2003 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Early Embryo
Lateral Plate Mesoderm

Medial Preplacodal Domain

Entry 13

GEISHA Id	MSX1.Khudyakov.2009	Data Source	Publication
Complete cDNA Template Probe	show AGAAGCGGAGCGGAGCCCTGATGCAGAGCCCCGCTTCTCGCCGCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCC TGCGCAAGCACAAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCG CAGAAGCAGTACCTGTCCATCGCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCT GGTTCCAGAACCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCAT GCTCCCGCCTGCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCC AGCCCCTTCCAGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACC TTACATAGGGCCGAGCCGCCCGTGCGGACCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGAT CTGTTCTGTGCCTGGCAGGAAGGAACC
Citation	Khudyakov J, Bronner-Fraser M. Comprehensive spatiotemporal analysis of early chick neural crest network genes. Dev Dyn. 2009 Mar;238(3):716-23.
Copyright	Published Online: 22 Feb 2009 Copyright © 2009 Wiley-Liss, Inc.
Comments	The sequence below was obtained from BBSRC ChEST Database (ChEST900p21) using the information provided in the publication.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Ectoderm
Epiblast
Mesoderm
Neural Plate/Tube
Placcode

ectomesoderm
neural plate border
posterior epiblast
preplacodal region

7-10

stage 7

stage 8

stage 9

stage 10

Ectoderm
Mesoderm
Neural Crest
Neural Plate/Tube

ectomesoderm
neural plate border

Entry 14

GEISHA Id	MSX1.Basch.2006	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Basch ML, Bronner-Fraser M, García-Castro MI. Specification of the neural crest occurs during gastrulation and requires Pax7. Nature. 2006 May 11;441(7090):218-22.
Copyright	Copyright © 2006, Nature Publishing Group
Comments	Insufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Area Opaca

Entry 15

GEISHA Id	MSX1.Fuchs.2010	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Fuchs A, Inthal A, Herrmann D, Cheng S, Nakatomi M, Peters H, Neubüser A. Regulation of Tbx22 during facial and palatal development. Dev Dyn. 2010 Nov;239(11):2860-74.
Copyright	© 2010 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 19

stage 23

Face Mesenchyme
Nasal Placode/Nerve
Pharyngeal Arches and Clefts

25-27

stage 26

stage 27

Face Mesenchyme
Nasal Placode/Nerve

nasal region

Entry 16

GEISHA Id	MSX1.Gibson.2011	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Gibson A, Robinson N, Streit A, Sheng G, Stern CD. Regulation of programmed cell death during neural induction in the chick embryo.Int J Dev Biol. 2011;55(1):33-43.
Copyright	"Reprinted from Int. J. Dev. Biol., 55(1), Copyright (2011), with permission from the authors and IJDB, Copyright © 2002 UBC Press". All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-8

stage 8

Early Mesoderm
Epiblast
Extraembryonic Mesoderm

Entry 17

GEISHA Id	MSX1.Ha.2008	Data Source	Publication
Complete cDNA Template Probe	show `TGCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTC CAGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGG GCCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGT GCCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCA GCCCAGTAGGACATT`
Citation	Ha Y, Tsukada A, Saito N, Zadworny D, Shimada K. Identification of differentially expressed genes involved in the regression and development of the chicken Müllerian duct. Int J Dev Biol. 2008;52(8):1135-41.
Copyright	Reprinted from Int. J. Dev. Biol., 55(1), Copyright (2011), with permission from the authors and IJDB
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-35

stage 35

Intermediate Mesoderm
Unlabeled

male, mullerian duct

Entry 18

GEISHA Id	MSX1.Stuhlmiller.2012	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Stuhlmiller TJ, García-Castro MI. FGF/MAPK signaling is required in the gastrula epiblast for avian neural crest induction. Development. 2012 Jan;139(2):289-300.
Copyright	© 2012. Published by The Company of Biologists Ltd
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488.2).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-5

stage 5

Early Mesoderm
Epiblast

control embryo

Entry 19

GEISHA Id	MSX1/2.Ohyama.2008	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Ohyama K, Das R, Placzek M. Temporal progression of hypothalamic patterning by a dual action of BMP. Development. 2008 Oct;135(20):3325-31. Epub 2008 Sep 11.
Copyright	requested from MP
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205488.2)= MSX1

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

Unlabeled

13-18

stage 14

stage 16

Diencephalon

stage 25

Diencephalon

Entry 20

GEISHA Id	MSX1.Fisher.2008	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Fisher ME, Clelland AK, Bain A, Baldock RA, Murphy P, Downie H, Tickle C, Davidson DR, Buckland RA. Integrating technologies for comparing 3D gene expression domains in the developing chick limb. Dev Biol. 2008 May 1;317(1):13-23. Epub 2008 Feb 7.
Copyright	Copyright © 2008 Elsevier Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205488.2 ).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-22

stage 22

Central Nervous System
Limb Buds
Pharyngeal Arches and Clefts

Entry 21

GEISHA Id	MSX1.Marcucio.2005	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Marcucio RS, Cordero DR, Hu D, Helms JA. Molecular interactions coordinating the development of the forebrain and face. Dev Biol. 2005 Aug 1;284(1):48-61.
Copyright	Copyright © 2005 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205488.2).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-20

stage 20

Forebrain
Pharyngeal Arches and Clefts

cell adjacent to the ectoderm
maxillary process mesenchyme

all

Entry 22

GEISHA Id	Msx‐1.Afrakhte.2004	Data Source	Publication
Complete cDNA Template Probe	show GCAGAGGCGCACGGCACTCCCCGGGCGGCCCCGGCCCCGCTCCAGCCACGCTCCGCATTCGCGATGGCTTCTCCTTCCA AAGCGAAGGAGGTTTTCTCCTCCGACGAGGAGGGCCCGGCGGCCGGCGCCGAGGAGCACCACAAAGTCAAGGTGTCCAG CTTGCCGTTCAGCGTGGAAGCCCTCATGTCCGACAAGAAACCCCCTAAAGAGCTGCCGCTGGCCGCGGCGGGGGGCAAC GCCGACGGGGCGACCGTGGGCACCTCCAGGAACCTGCTGCTGCCGGGCCACGGCTCCCGGGACGCGCACAGCCCCCCCG GGGCTCTTACAAAAACCTTCGACACCGCTTCGGTCAAATCGGAGAACTCGGAGGACGGCACGTCCTGGATCCAAGAGGC CGGGAGATATTCGCCTCCTCCAAGACACCTGAGCCCTACAGCCTGCACTCTGAGGAAGCACAAGACGAATCGGAAGCCC CGCACCCCATTCACTACTTCCCAGCTGCTGGCCCTGGAGCGCAAGTTCCGCCAGAAGCAGTACCTGTCCATCGCCGAGC GAGCCGAATTCTCCAGCTCCCTCAACCTCACAGAGACCCAGGTCAAAATCTGGTTCCAAAATCGGAGGGCCAAGGCCAA GAGACTGCAGGAGGCTGAGCTAGAGAAGCTCAAAATGGCAGCGAAGCCAATGTTGCCGTCGGGGTTCAGCCTCCCTTTC CCCATCAACTCCCCCATCCAGGCCGCCTCACTGTACGGAACATCCTACCCTTTTCACAGACCTGTGCTTCCTATCCCGC CCGTTGGACTCTATGCTACTCCTGTCGGATATAGCATGTACCACTTATCTTAAGGAGATCAGAAAGGCACAGTGACAGC GAGAGAGACTTCCTGGTGGATCTCATCCAGCCTCAAGAATGCAGTACCCAACCGGTACTGGCCGTTCTTTCTGCACGCT TCTATCTGCCATCCCGAGTGTACAGGAGTTCGCGTTAGCAAAGCAAGGCATCCTGTATGCAACAGGCTGGGTGTCTTCT GAGAGCGCTCTGAGTGCTCACAGTCTGATCCTCAGAGTGTTTAAAAAAAAAAAAAA
Citation	Afrakhte M, Schultheiss TM. Construction and analysis of a subtracted library and microarray of cDNAs expressed specifically in chicken heart progenitor cells. Dev Dyn. 2004 Jun;230(2):290-8.
Copyright	Copyright © 2004 Wiley‐Liss, Inc.
Comments	The complete cDNA template sequence was obtained from the information in the publication as described in Afrakhte et al. 2004.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Early Mesoderm
Extraembryonic Mesoderm
Lateral Plate Mesoderm

31-44

stage 44

Entry 23

GEISHA Id	Msx‐1.Barlow.1999	Data Source	Publication
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Barlow AJ, Bogardi JP, Ladher R, Francis-West PH. Expression of chick Barx-1 and its differential regulation by FGF-8 and BMP signaling in the maxillary primordia. Dev Dyn. 1999 Apr;214(4):291-302.
Copyright	Copyright © 1999 Wiley‐Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 20

stage 24

Mesoderm

25-30

stage 28

Mesoderm

31-44

stage 44

Entry 24

GEISHA Id	MXS-1.Liem.1995	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGCGGGGCCGCCCTGC ATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCCGCCTTCAGCAAGC CCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGTCCCCTTCCCCGCT GCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGAGGGTTCCGGGCCC CCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCTCTCGGCGGCCACT TCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGAAGCCGGAGCGGAG CCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCACCCTGCGCAAGCAC AAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTCCGCCAGAAGCAGT ACCTGTCCATCGCTGAGCGTGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAA CCGCCGCGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCCCATGCTCCCGCCT GCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCCTCCAGCCCCTTCC AGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACCACCTTACATAGGG CCGAGCCGCCCGTGCGGCCCCTGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTGGGATCTGTTCTGTG CCTGGCAGGAAGGAACCCGTGGTGCAGCCCTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAAGGGCACAAAGGCAG CCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGCAGCTGTTAACCTGT GGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATATTTGAAATTTTATTA TCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Liem Jr., K.F, Tremml G, Roelink H, Jessell T.M. Dorsal differentiation of neural plate cells induced by BMP-mediated signals from epidermal ectoderm. Cell. 1995; 82: 969-979.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488.2).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-10

stage 10

Neural Plate/Tube

dorsal region of the neural folds
dorsal region of the neural tube
neural plate rostral to Hensen's node

all

Entry 25

GEISHA Id	MSX1.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show GGACCGCGCCGACGGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGC GGGGCCGCCCTGCATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCC GCCTTCAGCAAGCCCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGT CCCCTTCCCCGCTGCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGA GGGTTCCGGGCCCCCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCT CTCGGCGGCCACTTCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGA AGCCGGAGCGGAGCCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCAC CCTGCGCAAGCACAAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTC CGCCAGAAGCAGTACCTGTCCATCGCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGA TCTGGTTCCAGAACCGCCGTGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCC CATGCTCCCGCCTGCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCC TCCAGCCCCTTCCAGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACC ACCTTACATAGGGCCGAGCCGCCCGTGCGGGCCCCCGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTG GGATCTGTTCTGTGCCTGGCAGGAAGGAACCCGTGGTGCGGCCTTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAA GGGCACAAAGGCAGCCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGC AGCTGTTAACCTGTGGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATAT TTGAAATTTTATTATCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488.3).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Proepicardium

Entry 26

GEISHA Id	MSX1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGACCGCGCCGACGGCTCCCGCGCCTCCGCCGCGCCCTCATGAGCCGCGGCCGCCGCTCCCGCGGAGCACGGCGACAGC GGGGCCGCCCTGCATGGCCCCGGCTGCGGACATGACCACCGCGCCCACCGGCGTCCGCAGCGACGAGCCGCCCGCCTCC GCCTTCAGCAAGCCCGGCGGCGGCCTCCCCGTCGCGGCGGCGATGGGCGGCGAGGAGGAGAGCGACAAACCCAAGGTGT CCCCTTCCCCGCTGCCCTTCAGCGTGGAAGCGCTCATGGCCGACCGCAGGAAGCCGCCGGGCGGCAGAGACGGTCCCGA GGGTTCCGGGCCCCCTCTGGGCTCCGCCCGAGCCAACCTCGGCGCTCTGACGACGGAGGCACCGACGTCGCCGCTGCCT CTCGGCGGCCACTTCCCGTCCGTCGGGGCGCTGGGCAAGCTGCCCGAGGACGCGCTGCTCAAAGCAGAGAGCCCCGAGA AGCCGGAGCGGAGCCCCTGGATGCAGAGCCCCCGCTTCTCGCCGCCCCCGCCCAGGCGGCTGAGCCCCCCCGCCTGCAC CCTGCGCAAGCACAAGACCAACAGGAAGCCCCGGACGCCCTTCACCACGGCCCAGCTGCTGGCCCTGGAGAGGAAATTC CGCCAGAAGCAGTACCTGTCCATCGCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACCGAGACGCAGGTGAAGA TCTGGTTCCAGAACCGCCGTGCCAAGGCCAAGCGGCTGCAGGAGGCCGAGCTGGAGAAGCTGAAGATGGCAGCCAAGCC CATGCTCCCGCCTGCTGCATTCGGCATCTCCTTCCCGTTGGGCGGCCCAGCAGTGGCCGGCGCATCCCTGTACGGAGCC TCCAGCCCCTTCCAGCGAGCGGGGCTGCCCGTGGCCCCTGTGGGACTGTACACGGCGCACGTGGGATATAGTATGTACC ACCTTACATAGGGCCGAGCCGCCCGTGCGGGCCCCCGGCAGAGACTTCTCCGCTCCCTTCATCCAGACCTTCAACCCTG GGATCTGTTCTGTGCCTGGCAGGAAGGAACCCGTGGTGCGGCCTTGCTGGCACCTGGGGAAGGAACTGTGGCAGAGAAA GGGCACAAAGGCAGCCCAGTAGGACATTTCTGCAAGGCGAGGGTGGGAGGCAGAGCCGCCTGTCCCGTCCCTGCAGGGC AGCTGTTAACCTGTGGCCATTCCTCCGCCAGCTCCTGAGGAAGGGGCTCTCTCTGTGTACTATGTAATATACTGTATAT TTGAAATTTTATTATCATTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAAGCTAC
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205488).