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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SOX17
SRY-box 17

The human orthologue of this gene is associated
with the following human disease:

Vesicoureteral reflux 3

Gene

Official Symbol	SOX17
Official Full Name	SRY-box 17
CGNC ID	53393
also known as	transcription factor SOX-17\|HMG transcription factor SOX17\|SRY (sex determining region Y)-box 17
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001039326
Polypeptide	NP_001034415
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.7231

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	64321	ENSG00000164736	MIM:613674	MIM:610928
Mouse	20671	ENSMUSG00000025902	All phenotypic alleles (9):Targeted, knock-out(2) Targeted, other(7)	MGI:107543
Xenopus	395066, 397966, 398765			484294
Zebrafish	30544	ENSDARG00000041345	ZDB-GENE-991213-1	ZFIN:ZDB-GENE-991213-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428534
Ensembl Gene
KEGG	gga:428534

Entry 1

GEISHA Id	pgr1n.pk001.g24	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show `GTCCGTCCGTGGCCGTATGGGCCCGGGCGCCCCGCGATGAGCATCCCCGATGCGTGCTACACCAGCAACGAGGAGCATG CGCATGGCCGGGGCGCGCTGCCCTCTATGATGCCTGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGATCCCGCCGGG CGATGCCTAGGCGAATGGCTAGGCGGGCGCGACCGGCGGGCTCGGCAAGGGCGATGCGCGGATCCGGCTGCCCATGAAC TCCTTCATGGTGTGGGCGAAGGACTAGTGCAATCTGCTGGCGCAGCAGAATCCTGACCTGCACATACTTGATCTCATCA AGATTCTGGGTATATCGTGGAAGGCGC`

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Endoderm, early

7-12

stage 10

stage 11

Endoderm
Extraembryonic

stage 13

Anterior Intestinal Portal
Blood Vessels
Endoderm
Extraembryonic

Entry 2

GEISHA Id	SOX17.Chapman.2007	Data Source	Publication
Complete cDNA Template Probe	show GGGGCCCGGGCGCCCCGCGATGAGCAGCCCCGATGCGGGCTACGCCAGCAGCGAGGAGCAGGCGCAGGGCCGGGGCGCG CTGCCCGCTATGATGCCGGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGAGCCCGCCGGGCGAGGCCAAGGCGAAGG GCGAGGCGGGGGCGACGGGCGGGCGCGGCAAGGGCGAGGCGCGGATCCGGCGGCCCATGAACGCCTTCATGGTGTGGGC GAAGGACGAGCGCAAGCGGCTGGCGCAGCAGAACCCGGACCTGCACAACGCGGAGCTCAGCAAGATGCTGGGTAAATCG TGGAAGGCGCTGTCGCTGGCGGAGAAGCGGCCGTTCGTGGAGGAGGCGGAGCGGCTGCGGGTGCAGCACATGCAGGACC ACCCGAACTACAAGTACCGGCCGCGGCGGCGGAAGCAGGTGAAGCGCCTGAAGCGGGCGGAGGGCGGCTTCGCGCAGCA CGGCCCGGCCGAGGCGGCGCCGCCCGCGCTGGGCCCCGACGGAGGCGGCGTCGGGACGTGCGGCGAGAGCCTGGCGCTG CCGTACGCGGAGCGCGGCTACGCGGCGGGGCCGGGGCGCTACCGGGACTGCCCGCCGCTGGGCGCCGCCTTCGACGGCT TCGGGCTGCCCACGCCGGACCCGTCCCCGCTGGACGCGGCGCACGGCGAGGCGCCCTTCTTCGCGCCGGGGCCGCCCGA CGAGTGCGCGCCGGGGCCCTACGGCGGCTACGGCCCCGCGGCGGCGGGAGACTTCGCGGCGGCGGGAGCGGGCGAGAGC CCCGCGGGGGCGGCGCTGCGGCGGCACCAGCACCAGCACCACCAGCCGCACCAGCACTCGCACCCCGCTGCCGGCGAGC TGGGGCCGGGCGGCGCCCTGCCGGGGCTGCTGGGCTGCCCGGCGCCGCCGCACTACTACGGGCAGCTGTGCCCGGGCCG CGGCCCGCCCGCTCCCGTGCCCGTGCCGGTGGCTGTGGCGCTGGGCGCGCAGCCGTCCCCGCCGCCCGAGGCCGCGGCG TGCCGGGAGCCGCTGGAGCACTTGCCGCAGGAGGAGCTGCTGGGCGAGGTGGACCGCAGCGAGTTCGAGCAGTACCTGC GCTTCGCCTGCAAGGCCGAGCTGGGGCCGCCCTTCGCGGGCCACGACGTGGCCGGGCTGGCGTCGCCCGAGGCTGCGGG GCCGCTCTCCGCCGTGGTGTCGGACGCCAGCAGCGCCGTCTACTACTGCGGCTACGCCGACGGCTGAGGGCTGCGGCGG CACCGGGACGCCTCGCTCCTATTTATGTAATTTATTCGGATGCTGAGGACTGCCGAGGACCGGGACTCGCTCGGGGTTC AGAGGGTGCCGCGGCCGCGCCGCGCTCCGAGTGATGCCGGGATCGCCGTCCCCGTCTCACCGCGGGGTGCCGCGTTCGT TCCGCGGAACCCCGACGTGACACACAGCGGGGATGTCATTCATGGTCGAGATCCTTGCGGAGATAGCGATGGTTTTGTA ACGTTGTACAGACTTCGGGTTTTTATATGTTGGTCGTGTACAGAGTAATTTTGCACTTTTTCCATGGTACCCGGATCCT C
Citation	Chapman SC, Matsumoto K, Cai Q, Schoenwolf GC. Specification of germ layer identity in the chick gastrula. BMC Dev Biol. 2007 Jul 30;7:91.
Copyright	© 2007 Chapman et al; licensee BioMed Central Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001039326.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

stage 3

Early Endoderm
Kohler's Sickle
Primitive Streak

Stage 3b chicken embryo
CGW, caudal germ wall
PMZ, posterior marginal zone
Stage 3c chicken embryo
sagittal section of Fig. 1 (A)
sagittal section of Fig. 1 (E)

stage 4

Early Endoderm

sagittal section of Fig. 1 (G)

Entry 3

GEISHA Id	SOX17.Acloque.2011	Data Source	Publication
Complete cDNA Template Probe	show GGGGCCCGGGCGCCCCGCGATGAGCAGCCCCGATGCGGGCTACGCCAGCAGCGAGGAGCAGGCGCAGGGCCGGGGCGCG CTGCCCGCTATGATGCCGGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGAGCCCGCCGGGCGAGGCCAAGGCGAAGG GCGAGGCGGGGGCGACGGGCGGGCGCGGCAAGGGCGAGGCGCGGATCCGGCGGCCCATGAACGCCTTCATGGTGTGGGC GAAGGACGAGCGCAAGCGGCTGGCGCAGCAGAACCCGGACCTGCACAACGCGGAGCTCAGCAAGATGCTGGGTAAATCG TGGAAGGCGCTGTCGCTGGCGGAGAAGCGGCCGTTCGTGGAGGAGGCGGAGCGGCTGCGGGTGCAGCACATGCAGGACC ACCCGAACTACAAGTACCGGCCGCGGCGGCGGAAGCAGGTGAAGCGCCTGAAGCGGGCGGAGGGCGGCTTCGCGCAGCA CGGCCCGGCCGAGGCGGCGCCGCCCGCGCTGGGCCCCGACGGAGGCGGCGTCGGGACGTGCGGCGAGAGCCTGGCGCTG CCGTACGCGGAGCGCGGCTACGCGGCGGGGCCGGGGCGCTACCGGGACTGCCCGCCGCTGGGCGCCGCCTTCGACGGCT TCGGGCTGCCCACGCCGGACCCGTCCCCGCTGGACGCGGCGCACGGCGAGGCGCCCTTCTTCGCGCCGGGGCCGCCCGA CGAGTGCGCGCCGGGGCCCTACGGCGGCTACGGCCCCGCGGCGGCGGGAGACTTCGCGGCGGCGGGAGCGGGCGAGAGC CCCGCGGGGGCGGCGCTGCGGCGGCACCAGCACCAGCACCACCAGCCGCACCAGCACTCGCACCCCGCTGCCGGCGAGC TGGGGCCGGGCGGCGCCCTGCCGGGGCTGCTGGGCTGCCCGGCGCCGCCGCACTACTACGGGCAGCTGTGCCCGGGCCG CGGCCCGCCCGCTCCCGTGCCCGTGCCGGTGGCTGTGGCGCTGGGCGCGCAGCCGTCCCCGCCGCCCGAGGCCGCGGCG TGCCGGGAGCCGCTGGAGCACTTGCCGCAGGAGGAGCTGCTGGGCGAGGTGGACCGCAGCGAGTTCGAGCAGTACCTGC GCTTCGCCTGCAAGGCCGAGCTGGGGCCGCCCTTCGCGGGCCACGACGTGGCCGGGCTGGCGTCGCCCGAGGCTGCGGG GCCGCTCTCCGCCGTGGTGTCGGACGCCAGCAGCGCCGTCTACTACTGCGGCTACGCCGACGGCTGAGGGCTGCGGCGG CACCGGGACGCCTCGCTCCTATTTATGTAATTTATTCGGATGCTGAGGACTGCCGAGGACCGGGACTCGCTCGGGGTTC AGAGGGTGCCGCGGCCGCGCCGCGCTCCGAGTGATGCCGGGATCGCCGTCCCCGTCTCACCGCGGGGTGCCGCGTTCGT TCCGCGGAACCCCGACGTGACACACAGCGGGGATGTCATTCATGGTCGAGATCCTTGCGGAGATAGCGATGGTTTTGTA ACGTTGTACAGACTTCGGGTTTTTATATGTTGGTCGTGTACAGAGTAATTTTGCACTTTTTCCATGGTACCCGGATCCT C
Citation	Hervé Acloque, Oscar H. Ocaña, Ander Matheu, Karine Rizzoti, Clare Wise, Robin Lovell-Badge, M. Angela Nieto Reciprocal Repression between Sox3 and Snail Transcription Factors Defines Embryonic Territories at Gastrulation. Dev Cell. 2011 September 13; 21(3): 546558.
Copyright	Copyright © 2011 Published by Elsevier Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001039326.1).