Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

SOX17
SRY-box 17

The human orthologue of this gene is associated
with the following human disease:

Vesicoureteral reflux 3

Gene

Official Symbol	SOX17
Official Full Name	SRY-box 17
CGNC ID	53393
also known as	transcription factor SOX-17\|HMG transcription factor SOX17\|SRY (sex determining region Y)-box 17
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001039326
Polypeptide	NP_001034415

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	64321	ENSG00000164736	MIM:613674	MIM:610928
Mouse	20671	ENSMUSG00000025902	All phenotypic alleles (9):Targeted, knock-out(2) Targeted, other(7)	MGI:107543
Xenopus	395066, 397966, 398765			484294
Zebrafish	30544	ENSDARG00000041345	ZDB-GENE-991213-1	ZFIN:ZDB-GENE-991213-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428534
Ensembl Gene
KEGG	gga:428534

Entry 1

GEISHA Id	pgr1n.pk001.g24	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show `GTCCGTCCGTGGCCGTATGGGCCCGGGCGCCCCGCGATGAGCATCCCCGATGCGTGCTACACCAGCAACGAGGAGCATG CGCATGGCCGGGGCGCGCTGCCCTCTATGATGCCTGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGATCCCGCCGGG CGATGCCTAGGCGAATGGCTAGGCGGGCGCGACCGGCGGGCTCGGCAAGGGCGATGCGCGGATCCGGCTGCCCATGAAC TCCTTCATGGTGTGGGCGAAGGACTAGTGCAATCTGCTGGCGCAGCAGAATCCTGACCTGCACATACTTGATCTCATCA AGATTCTGGGTATATCGTGGAAGGCGC`

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Endoderm, early

7-12

stage 10

stage 11

Endoderm
Extraembryonic

stage 13

Anterior Intestinal Portal
Blood Vessels
Endoderm
Extraembryonic

Entry 2

GEISHA Id	SOX17.Chapman.2007	Data Source	Publication
Complete cDNA Template Probe	show GGGGCCCGGGCGCCCCGCGATGAGCAGCCCCGATGCGGGCTACGCCAGCAGCGAGGAGCAGGCGCAGGGCCGGGGCGCG CTGCCCGCTATGATGCCGGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGAGCCCGCCGGGCGAGGCCAAGGCGAAGG GCGAGGCGGGGGCGACGGGCGGGCGCGGCAAGGGCGAGGCGCGGATCCGGCGGCCCATGAACGCCTTCATGGTGTGGGC GAAGGACGAGCGCAAGCGGCTGGCGCAGCAGAACCCGGACCTGCACAACGCGGAGCTCAGCAAGATGCTGGGTAAATCG TGGAAGGCGCTGTCGCTGGCGGAGAAGCGGCCGTTCGTGGAGGAGGCGGAGCGGCTGCGGGTGCAGCACATGCAGGACC ACCCGAACTACAAGTACCGGCCGCGGCGGCGGAAGCAGGTGAAGCGCCTGAAGCGGGCGGAGGGCGGCTTCGCGCAGCA CGGCCCGGCCGAGGCGGCGCCGCCCGCGCTGGGCCCCGACGGAGGCGGCGTCGGGACGTGCGGCGAGAGCCTGGCGCTG CCGTACGCGGAGCGCGGCTACGCGGCGGGGCCGGGGCGCTACCGGGACTGCCCGCCGCTGGGCGCCGCCTTCGACGGCT TCGGGCTGCCCACGCCGGACCCGTCCCCGCTGGACGCGGCGCACGGCGAGGCGCCCTTCTTCGCGCCGGGGCCGCCCGA CGAGTGCGCGCCGGGGCCCTACGGCGGCTACGGCCCCGCGGCGGCGGGAGACTTCGCGGCGGCGGGAGCGGGCGAGAGC CCCGCGGGGGCGGCGCTGCGGCGGCACCAGCACCAGCACCACCAGCCGCACCAGCACTCGCACCCCGCTGCCGGCGAGC TGGGGCCGGGCGGCGCCCTGCCGGGGCTGCTGGGCTGCCCGGCGCCGCCGCACTACTACGGGCAGCTGTGCCCGGGCCG CGGCCCGCCCGCTCCCGTGCCCGTGCCGGTGGCTGTGGCGCTGGGCGCGCAGCCGTCCCCGCCGCCCGAGGCCGCGGCG TGCCGGGAGCCGCTGGAGCACTTGCCGCAGGAGGAGCTGCTGGGCGAGGTGGACCGCAGCGAGTTCGAGCAGTACCTGC GCTTCGCCTGCAAGGCCGAGCTGGGGCCGCCCTTCGCGGGCCACGACGTGGCCGGGCTGGCGTCGCCCGAGGCTGCGGG GCCGCTCTCCGCCGTGGTGTCGGACGCCAGCAGCGCCGTCTACTACTGCGGCTACGCCGACGGCTGAGGGCTGCGGCGG CACCGGGACGCCTCGCTCCTATTTATGTAATTTATTCGGATGCTGAGGACTGCCGAGGACCGGGACTCGCTCGGGGTTC AGAGGGTGCCGCGGCCGCGCCGCGCTCCGAGTGATGCCGGGATCGCCGTCCCCGTCTCACCGCGGGGTGCCGCGTTCGT TCCGCGGAACCCCGACGTGACACACAGCGGGGATGTCATTCATGGTCGAGATCCTTGCGGAGATAGCGATGGTTTTGTA ACGTTGTACAGACTTCGGGTTTTTATATGTTGGTCGTGTACAGAGTAATTTTGCACTTTTTCCATGGTACCCGGATCCT C
Citation	Chapman SC, Matsumoto K, Cai Q, Schoenwolf GC. Specification of germ layer identity in the chick gastrula. BMC Dev Biol. 2007 Jul 30;7:91.
Copyright	© 2007 Chapman et al; licensee BioMed Central Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001039326.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

stage 3

Early Endoderm
Kohler's Sickle
Primitive Streak

Stage 3b chicken embryo
CGW, caudal germ wall
PMZ, posterior marginal zone
Stage 3c chicken embryo
sagittal section of Fig. 1 (A)
sagittal section of Fig. 1 (E)

stage 4

Early Endoderm

sagittal section of Fig. 1 (G)

Entry 3

GEISHA Id	SOX17.Acloque.2011	Data Source	Publication
Complete cDNA Template Probe	show GGGGCCCGGGCGCCCCGCGATGAGCAGCCCCGATGCGGGCTACGCCAGCAGCGAGGAGCAGGCGCAGGGCCGGGGCGCG CTGCCCGCTATGATGCCGGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGAGCCCGCCGGGCGAGGCCAAGGCGAAGG GCGAGGCGGGGGCGACGGGCGGGCGCGGCAAGGGCGAGGCGCGGATCCGGCGGCCCATGAACGCCTTCATGGTGTGGGC GAAGGACGAGCGCAAGCGGCTGGCGCAGCAGAACCCGGACCTGCACAACGCGGAGCTCAGCAAGATGCTGGGTAAATCG TGGAAGGCGCTGTCGCTGGCGGAGAAGCGGCCGTTCGTGGAGGAGGCGGAGCGGCTGCGGGTGCAGCACATGCAGGACC ACCCGAACTACAAGTACCGGCCGCGGCGGCGGAAGCAGGTGAAGCGCCTGAAGCGGGCGGAGGGCGGCTTCGCGCAGCA CGGCCCGGCCGAGGCGGCGCCGCCCGCGCTGGGCCCCGACGGAGGCGGCGTCGGGACGTGCGGCGAGAGCCTGGCGCTG CCGTACGCGGAGCGCGGCTACGCGGCGGGGCCGGGGCGCTACCGGGACTGCCCGCCGCTGGGCGCCGCCTTCGACGGCT TCGGGCTGCCCACGCCGGACCCGTCCCCGCTGGACGCGGCGCACGGCGAGGCGCCCTTCTTCGCGCCGGGGCCGCCCGA CGAGTGCGCGCCGGGGCCCTACGGCGGCTACGGCCCCGCGGCGGCGGGAGACTTCGCGGCGGCGGGAGCGGGCGAGAGC CCCGCGGGGGCGGCGCTGCGGCGGCACCAGCACCAGCACCACCAGCCGCACCAGCACTCGCACCCCGCTGCCGGCGAGC TGGGGCCGGGCGGCGCCCTGCCGGGGCTGCTGGGCTGCCCGGCGCCGCCGCACTACTACGGGCAGCTGTGCCCGGGCCG CGGCCCGCCCGCTCCCGTGCCCGTGCCGGTGGCTGTGGCGCTGGGCGCGCAGCCGTCCCCGCCGCCCGAGGCCGCGGCG TGCCGGGAGCCGCTGGAGCACTTGCCGCAGGAGGAGCTGCTGGGCGAGGTGGACCGCAGCGAGTTCGAGCAGTACCTGC GCTTCGCCTGCAAGGCCGAGCTGGGGCCGCCCTTCGCGGGCCACGACGTGGCCGGGCTGGCGTCGCCCGAGGCTGCGGG GCCGCTCTCCGCCGTGGTGTCGGACGCCAGCAGCGCCGTCTACTACTGCGGCTACGCCGACGGCTGAGGGCTGCGGCGG CACCGGGACGCCTCGCTCCTATTTATGTAATTTATTCGGATGCTGAGGACTGCCGAGGACCGGGACTCGCTCGGGGTTC AGAGGGTGCCGCGGCCGCGCCGCGCTCCGAGTGATGCCGGGATCGCCGTCCCCGTCTCACCGCGGGGTGCCGCGTTCGT TCCGCGGAACCCCGACGTGACACACAGCGGGGATGTCATTCATGGTCGAGATCCTTGCGGAGATAGCGATGGTTTTGTA ACGTTGTACAGACTTCGGGTTTTTATATGTTGGTCGTGTACAGAGTAATTTTGCACTTTTTCCATGGTACCCGGATCCT C
Citation	Hervé Acloque, Oscar H. Ocaña, Ander Matheu, Karine Rizzoti, Clare Wise, Robin Lovell-Badge, M. Angela Nieto Reciprocal Repression between Sox3 and Snail Transcription Factors Defines Embryonic Territories at Gastrulation. Dev Cell. 2011 September 13; 21(3): 546558.
Copyright	Copyright © 2011 Published by Elsevier Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001039326.1).