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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXD8
homeobox D8

Gene

Official Symbol	HOXD8
Official Full Name	homeobox D8
CGNC ID	49743
also known as	homeobox protein Hox-D8\|CHOX M product\|chox-M\|homeo box D8\|homeobox protein Hox-M, Homeobox D8, HOXD8
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_207177
Polypeptide	NP_997060
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3187

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3234	ENSG00000175879		MIM:142985
Mouse	15437	ENSMUSG00000027102	All phenotypic alleles (1):Targeted, knock-out(1)	MGI:96209
Xenopus	100216142, 398875			920112
Zebrafish

Gene Ontology

Molecular Function	sequence-specific DNA binding transcription factor activity, more...
Biological Process	anterior/posterior pattern specification, more...
Cellular Component	nucleus

Links to other databases

Entrez Gene	396301
Ensembl Gene	ENSGALG00000028128
KEGG	gga:396301

Entry 1

GEISHA Id	HOXD8.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	ATTGGCGAGGAACCAGACCAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGAGGAGCGGACGAGCGGACATC	cDNA Template Length	557
Forward cDNA Template Probe	show CACCGGNNNNCCAGACGCATTGGAATCGCTCGGAGCAGTTGGACCCAAACCCGAACCCCACGGCGCGGAGTGGGGCGGG ACGCGGCCCCGCGGGACGCACACGGCGGGGACGGGCCCGGAGCTGCGGCCGTGGGCTCCTCGTTCCCGATGGCCCTTCA CAAAGGCTTTTAGGGCAAAATTAATTTAATTCGTGTGGCTTTCGGCTCTGTCGTCTTCCAGATCATGTGTTTCCTTTTT GGCCTCCCCTTCCTTTCCCTCCTGCTTGGAAGCGGGGAATTTGTCCTTGTTGTTCTCCTTTTTCCACTTCATCCTCCTG TTCTGAAACCAGATCTTTACCTGCCGCTCGGTGAGTCCTAGGGCGTGGGACACCTCGATTCGTCTCTTCCTGGTCAGAT AGGGGTTAAAGAGAAACTCCTTCTCCAGCTCCAGCGTCTGGAAGCGGCTGTACGTCTGCCGCCCTCTCCTCCTCCCGGG CGCTGCTTGCGGTCTCATCCAGGGAAACATTTGAGCGGGAGACGAGCTCTGATTTAAGTGGTCTGATTCCTCGACAATA AAA
Comments	No specific expression observed at or before stage 11.

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 16

stage 17

Heart
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Somites
Widespread Expression

19-24

stage 20

stage 24

Eye
Foregut
Leg Mesenchyme
Sclerotome
Spinal Cord
Wing Mesenchyme

Entry 2

GEISHA Id	Hoxd10.Shah.2004	Data Source	Publication
Complete cDNA Template Probe	show CCCTGCAGCGGGGTTACCTGTCACGGGGAGCCCGCTAAATTTTACGGATACGATAACTTACAGAGACAGCAGATTTTTA CGACACAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGCTAATATTGGCGAGGAACCAGACCA CTTAAATCAGAGCTCGTCTCCCGCTCAAATGTTTCCCTGGATGAGACCGCAAGCAGCGCCCGGGAGGAGGAGAGGGCGG CAGACGTACAGCCGCTTCCAGACGCTGGAGCTGGAGAAGGAGTTTCTCTTTAACCCCTATCTGACCAGGAAGAGACGAA TCGAGGTGTCCCACGCCCTAGGACTCACCGAGCGGCAGGTAAAGATCTGGTTTCAGAACAGGAGGATGAAGTGGAAAAA GGAGAACAACAAGGACAAATTCCCCGCTTCCAAGCAGGAGGGAAAGGAAGGGGAGGCCAAAAAGGAAACACATGATCTG GAAGACGACAGAGCCGAAAGCCACACGAATTAAATTAATTTTGCCCTAAAAGCCTTTGTGAAGGGCCATCGGGAACGAG GAGCCCACGGCCGCAGCTCCGGGCCCGTCCCCGCCGTGTGCGTCCCGCGGGGCCGCGTCCCGCCCCACTCCGCGCCGTG TGGGTTCGGGTTTGGGTCCAACTGCATCCGGAGCGATCTCCAGATGTCCGCTCGTCCGCTCCTCCTGGAA
Citation	Shah, V, Drill, E, Lance-Jones, C. Ectopic Expression of Hoxd10 in Thoracic Spinal Segments Induces Motoneurons With a Lumbosacral Molecular Profile and Axon Projections to the Limb. Dev Dyn. 2004 Sep;231(1):43-56.
Copyright	Copyright © 2004 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_207177.1), which is currently the closest match to HoxD10 in the database.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Limb Buds
Tail

25-28

stage 28

Spinal Cord
Tail

lumbosacral cord

Entry 3

GEISHA Id	HOXD8.Reid.2002	Data Source	Publication
Complete cDNA Template Probe	show GGGCGATTATATTCCAGCCCCGGTCACCGCGCACACGGAGAGCAGGAGAGGGGAGCGCACGGGGCGCGGCGGCGGCGGC ACCGGGAGAGCAGCGGAGAGGCACCGGCGGCGGCACCGGGAGCAGCGCCCCGCGCCCGCTCCCCGCCCGCCGCTGCCCC CTCCCCGATGAGCTCCTACTTTGTCAACCCGCTCTACTCCAAGTACAAGGCGGCGGCTGCGGCTGCGGCGGCGGTGGCG GCGGGGGAGCCTCTGCCCGCCCCGTACTACGACTGTCACTTCGCGCCCGAGAGACAGCAGATTTTTACGACACAGCAAG AGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGCTAATATTGGCGAGGAACCAGACCACTTAAATCAGAG CTCGTCTCCCGCTCAAATGTTTCCCTGGATGAGACCGCAAGCAGCGCCCGGGAGGAGGAGAGGGCGGCAGACGTACAGC CGCTTCCAGACGCTGGAGCTGGAGAAGGAGTTTCTCTTTAACCCCTATCTGACCAGGAAGAGACGAATCGAGGTGTCCC ACGCCCTAGGACTCACCGAGCGGCAGGTAAAGATCTGGTTTCAGAACAGGAGGATGAAGTGGAAAAAGGAGAACAACAA GGACAAATTCCCCGCTTCCAAGCAGGAGGGAAAGGAAGGGGAGGCCAAAAAGGAAACACATGATCTGGAAGACGACAGA GCCGAAAGCCACACGAATTAAATTAATTTTGCCCTAAAAGCCTTTGTGAAGGGCCATCGGGAACGAGGAGCCCACGGCC GCAGCTCCGGGCCCGTCCCCGCCGTGTGCGTCCCGCGGGGCCGCGTCCCGCCCCACTCCGCGCCGTGTGGGTTCGGGTT TGGGTCCAACTGCATCCGGAGCGATCTCCAGATGTCCGCTCGTCCGCTCCTCCTGGAAATCTGATAGCGAGTTCGCAGC AATACATTTCTAATGAGATATATATATATATATATATAAACAGATACTATTTTTTTTTTTGCAATATTGAAAGACGGTG ATTGCGACGTACACTTCCTAATGACAAGCGCCAATAAGCGAGACATGTACCAATGCTTTATTAATCAAACAAGTGCACT TGTACTATTTTATTTCTTGTTATTTTCTAATCTCGAATAAATTAAGGAAATTTAATAAATTTTGAAGAGCAGATCTTAG AAATATATCAAACTTTCTACTATCGATATTTGATTTAAATAAATCATAATTATTCAAATATAAAAAAAAAAAAAAAAA
Citation	Reid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
Copyright	Copyright © 2007 UBC Press
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_207177.1).