Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

CCNE1
cyclin E1

Gene

Official Symbol	CCNE1
Official Full Name	cyclin E1
CGNC ID	3317
also known as	G1/S-specific cyclin-E1\|cyclin E
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001031358
Polypeptide	NP_001026529
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.14522

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	34924			FBgn0010382
Human	898	ENSG00000105173		MIM:123837
Mouse	12447	ENSMUSG00000002068	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:88316
Xenopus	549082, 397841			972041
Zebrafish	30188	ENSDARG00000011133	ZDB-GENE-980526-168	ZFIN:ZDB-GENE-980526-168

Gene Ontology

Molecular Function	protein kinase binding
Biological Process	cell division, G1/S transition of mitotic cell cycle, more...
Cellular Component	nucleus

Links to other databases

Entrez Gene	426117
Ensembl Gene
KEGG	gga:426117

Entry 1

GEISHA Id	CCNE1	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCTCCAAATGCTGCTATTGAGG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGATCCAGACACTGACCAGGAAGTTC	cDNA Template Length	607
Complete cDNA Template Probe	show GCTCCAAATGCTGCTATTGAGGGTGATGCTTGATGTGACCAACTGTTCAGAAAAAAAGGCTTCAAGTTTAGGTTATTTA CCGTGCCTGTTTGTCTCTGGAATAATCAGCAGTTATGCTGTCCCCTGTTGACAACTGGGCAAAACGTGCTGTGCAAGGC GACATTTCAAAGCCTCTTTTTCAAATGGTTGGCTTACAACCTGATGCCTTTTTAAAAAAAAAAAACTCTTTATTGTAAA TGCTGCTATGTCTCTGTGTATCCATTTTTAATAAAAATGCTGTCTAAGACAGCTGGTTTTATGTATATTCCTATTTTTC TCTTGATTATGGTCAACTAAGGTTTTTCAGACTGTGACCACTAGTGTAGCGTGGGAATTGGGTGCAACGAATATAGTAA CTATCATCTTATTTATTTAGCACTACTAGCTTACCAATGGAAGTTTCGTTTTTTGGATACTAAGATGAATTTTTATGTT GATTTAGATTTTCCTTATTGAGTTGCACATGACAAGAGAGGGGATAATAGACGTGGCAGGTGTTTGGGGAATCCTTCCA CAACACACATGCCCATGATCACTCTCTTGGGAACTTCCTGGTCAGTGTCTGGAT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 8

Unlabeled

13-18

stage 14

Unlabeled

19-24

stage 19

stage 20

Unlabeled

stage 25

Foregut
Head Mesenchyme
Lung
Sclerotome
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	cyclinE1.Olivera-Martinez.2014	Data Source	Publication
Complete cDNA Template Probe	show GCGCCCTCGGCTCCGCTCGTGCCCGCGGGCCGGCGGCGGGCACGATGCGGCGGGAGAGCGACTGCGCGGAGGAGAAGGC TCCCGCCAAGGGGGAAGGGGGCGCCGAGGGGACCGTGCGGGCCCGCAAGAGGAAAGCCGATGTGGCCACGTTCCTCCAG GATCCCGACGAAGAAATTGCCAAAATTGAAATGAGTAGAAAAAAGCAATACGAAAACCAGCTGTCCTGGAATAACATTA ACAAAGATCCCCATATGCTGATTCCTACTCCAGATAAAGATGATGATCCAGTTGGTGTTGATTACTCTCACTTCATACA TCTGAATGTTGCTTCAACTAGATCTTCACCGCTACCAATTCTGGGCTGGGCAAACAGAGATGATGTATGGAAAAACATG ATAAACAAAGAGGAGACTTATGTGAGGGATAAACTATATATGCAAAGGCACCCTCTCCTGCAACCTAAAATGCGAACAA TCCTTCTAGACTGGCTAATGGAGGTTTGTGAAGTCTACAAGCTTTATAGAGAAACATTTTATTTAGCACAAGATTTCTT TGATAGGTTTATGGCAACACAACAGAATGTTGTAAAAACACTATTGCAACTTATTGGGATCTCTTCTTTATTCATAGCA GCAAAGCTTGAGGAAATTTATCCACCAAAGTTGCACCAGTTTGCCTATGTTACAGATGGAGCCTGTACAGAAGATGAAA TCCTCAGTATGGAATTGATCATTATGAAGGCTCTTAATTGGAACTTAAATCCACTGACAGTTGTATCATGGCTAAACAT TTACATGCAAGTTGCCTATTTAAATGAGCTTTACGAGGTATTGTTGCCACAATATCCACAACAAATATTTGTACAAATA GCAGAGCTCTTGGATCTCTGTGTGCTGGATATTGGCTGCTTGGAATATACATATGGTGTACTTGCAGCTTCTGCTTTGT ACCACTTCTCCTCATCTGAGTTGATGCAGAAAGTTTCAGGTTATGAATGGTGTGAGATAGAGGAATGTGTCAAATGGAT GGTTCCATTTGCTATGGCTATAAGGGAAGTAGGAAGCTCCAAACTCAAACACTTTAGAGGTATAGCTCCTGAAGACTTG CACAATATACAGACGCACATAAACAGCTTGGATTTGCTGGACAAAGCTCAAGCAAAACAAGCCATATTGGCTGAGCAAA ATAGGACTTCACCTTTCCCCACTGGTGTCCTTACGCCACCACAAAGCAGTAAGAAGCAGCCCGCTGGACTGAAGCCGAT ATGACTGTACGAACTGTTTACAGATGATTTTGCTGAAGTGCCTGTTCTGCTGGTTCTAACTCCTGCTCCATTATGGAAA TGCTGCCGGTGACATTCTAAAGCTTTTATGGAATTTGAAAAAGGAAACCTTATCTTTTTCACGACAGAAGATTTTTTTT TTTCTATTTGAAATATTTTTATTGAACGTTAAAATATTTTATAGAAATGGATCGAGTACGCCAGCCACTTAAAAGAACA CCGAAGAGTGCTCCAAATGCTGCTATTGAGGGTGATGCTTGATGTGACCAACTGTTCAGAAAAAAAGGCTTCAAGTTTA GGTTATTTACCGTGCCTGTTTGTCTCTGGAATAATCAGCAGTTATGCTGTCCCCTGTTGACAACTGGGCAAAACGTGCT GTGCAAGGCGACATTTCAAAGCCTCTTTTTCAAATGGTTGGCTTACAACCTGATGCCTTTTTAAAAAAAAAAAACTCTT TATTGTAAATGCTGCTATGTCTCTGTGTATCCATTTTTAATAAAAATGCTGTCTAAGACAGCTGGTTTTATGTATATTC CTATTTTTCTCTTGATTATGGTCAACTAAGGTTTTTCAGACTGTGACCACTAGTGTAGCGTGGGAATTGGGTGCAACGA ATATAGTAACTATCATCTTATTTATTTAGCACTACTAGCTTACCAATGGAAGTTTCGTTTTTTGGATACTAAGATGAAT TTTTATGTTGATTTAGATTTTCCTTATTGAGTTGCACATGACAAGAGAGGGGATAATAGACGTGGCAGGTGTTTGGGGA ATCCTTCCACAACACACATGCCCATGATCACTCTCTTGGGAACTTCCTGGTCAGTGTCTGGATCGTTGTATTTAATAGC AAGAAGCAATGGGGAAAGAAGGTTGCCTTTATTTTAAATGTAATGATTTAAACTTTGGGATTTTGGCGTATACTTTGAC AAGAA
Citation	Isabel Olivera-Martinez, Nick Schurch, Roman A Li, Junfang Song, Pamela A Halley, Raman M Das, Dave W Burt, Geoffrey J Barton, Kate G Storey. Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo. Development 2014 Aug;141(16):3266-76. Epub 2014 Jul 25. DOI: 10.1242/dev.112623.
Copyright	Copyright © 2014. Published by The Company of Biologists Ltd.
Comments	Authors indicated the probe was made from gene construct provided by G. Martin. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_001031358.1).