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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ID3
inhibitor of DNA binding 3, HLH protein

Gene

Official Symbol	ID3
Official Full Name	inhibitor of DNA binding 3, HLH protein
CGNC ID	49242
also known as	DNA-binding protein inhibitor ID-3\|helix-loop-helix protein\|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204589
Polypeptide	NP_989920
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4048

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395281
Ensembl Gene
KEGG	gga:395281

Entry 1

GEISHA Id	ID3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCCCACCCCACCATTATGAAAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCTCCCGATGTCGTCTGAGTATTGG	cDNA Template Length	623
Forward cDNA Template Probe	show NNGGGTAGTATGAGTTGGAGCCTCTACGTGAGGGGAGGTGGGTGCAGCCCCGTAGCACATCATGGGGGGGTCCGCCTTA TAGGGGGTANNNGAAGGGGGGNGTCGGGGGGGGCCGCACCCACAAGGTGCCGTGCATGAAGCGGCTCCTTACCTCCGGC TGATAATCAATCTGGAACCGATGGTCCGTGCTTGTTTGCTAAACCGCACTGATGGAGGAGGCGTTATTGACACTAACTT TTCTCGTTTTTGGAGCACAACCCGGAGGCCAATTCAGCCGCCTTAAAGGACTGCAGGTTGGACTCCGAAGAGGGGTCTT CGCCCCTTGTCCCCCTCTTCTAGCACGATCTGCTGGTCGAAGATATACTCGATGATGTGCTGGAGGATCTCCTCCTGGA TCATCTTGGTGCCTTGCGGGCATGCCCGGCTCCCACTCCCGCAATTTGGAGTAGTTCTTGTTCCATATCCTAGAAGATA TTTATGGGTTCCTGCCCCGCCTGGCTATTGTTGTTGAGGCTGCGGGAAATGGCCAAACTTTGCTATGAGGGGTAACAAA CGGCCCTCTTAACACCTTGTGACCGATAGTACAGGGTTGATGGGTTTCTTTAGGGAGGGTTGGTTAACCNCCTCCATTT TCTCTCTGT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Germinal Crescent
Lateral Plate Mesoderm

4-6

stage 4

stage 5

stage 6

Extraembryonic Mesoderm
Germinal Crescent
Headfold
Lateral Plate Mesoderm

7-12

stage 7

stage 8

stage 10

stage 11

stage 12

Anterior Intestinal Portal
Extraembryonic Mesoderm
Eye
Forebrain
Germinal Crescent
Head Mesenchyme
Headfold
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Paraxial Mesoderm
Primitive Streak
Somites
Spinal Cord
Tail

Dorsal view.
Ventral view.

13-18

stage 15

stage 18

Allantois
Blood Vessels
Ear/Otic Placode
Eye
Face Mesenchyme
Hindbrain
Lung
Midbrain
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Tail

19-24

stage 22

stage 23

stage 24

Atria
Ear/Otic Placode
Eye
Face Mesenchyme
Forebrain
Hindbrain
Leg Mesenchyme
Lung
Midbrain
Nasal Placode/Nerve
Oral Pharynx
Outflow Tract
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Left view.
Right view.

stage 25

Allantois
Ear/Otic Placode
Eye
Face Mesenchyme
Forebrain
Hindbrain
Leg Mesenchyme
Lung
Midbrain
Nasal Placode/Nerve
Oral Pharynx
Outflow Tract
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Spinal Cord
Wing Mesenchyme

Entry 2

GEISHA Id	ID3.Maier.2010	Data Source	Publication
Complete cDNA Template Probe	show CCCACGCGTCCGGTGAGATCCGAGCGCTCGGAGCGCGAGGGGTCGGAGGAGCCGGGAGCGAAGGACGGGGAGCATCGAG GGGTGAAGCTCTAATTCTCGGCGGTCCCACGCTCAGCCCCCTCAGACTCAGCATCCCCCCCCACCCCGACCACCCCCAC CCCACCATTATGAAAGCCATCAGCCCGGTGCGGTCGGTCAGGAGCTGTTACGAGGCCGTTTGCTGCCTCTCGGAGCAGA GTTTGGCCATCGCCCGCAGCAGCAACAACAAGAGCCCGGCGCTGGAGGAACCCATGAATCTGTTGTACGATATGAACGA CTGCTACTCCAAATTGCGGGAGTTGGTGCCGGGCATCCCGCAGGGCACCAAGCTGAGCCAGGTGGAGATCCTCCAGCAC GTCATCGATTATATCTTCGACCTGCAGATCGTGCTGGAAGAGGGGGCCAAGGGGCGAGACCCCTCCTCGGAGGCCACCC TGCTGTCCCTTAAGGCGGCTGAGTTGGCCTCCGGGCTGTGCTCCAAAGACGAGAGAAGTTTGTGTCACTAACGCCTCCT CCATCAGTGCCGATTAGCAAACACGCACCGACCGTCGGTTCCCGATTCGTTATCAGCCGGAGGTAACGAGCCGCTTCCT GCACGGCGCCGGGCGGCTGCGGCCCCCCCCGGACCCCCCCTTCGTGCTGTGCTATGGGGCTGCGGACCCCCCCGTGCTG TGCTATGGGGCTGCACCCACCTCCCTTCACCTCGGGGGCTCCAATACTCAGACGACATCGGGAGAGATGCGGCTGCTGA CCCCAACCCGGAGCTGCCCCGGCTGCGACTTTTGGAGCGGCGCTCCCCAAATCCCGGCTTTCTTTTTAGGACTTTTTTT TCCCCCTTTTTTCTTTAGGACTTCTTATTTTTTCCAACCCGCTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Maier, E, von Hofsten, J, Nord, H, Fernandes, M, Paek, H, Hebert, JM, Gunhaga, L, Opposing Fgf and Bmp activities regulate the specification of olfactory sensory and respiratory epithelial cell fates. Development. 2010 May 15; 137(10): 16011611.
Copyright	Copyright © 2010. Held by the authors. Requested
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204589).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

Nasal Placode/Nerve

Stage 12 to 22, observed at 22

25-27

stage 25

stage 27

Nasal Placode/Nerve

Stage 17 to 25, observed at 25
Stage 21 to 27, observed at 27

Entry 3

GEISHA Id	ID3.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TTGCGGCTCGAGCTGGAAGAGGGGGCCAAGGGGCGAGACCCCTCCTCGGAGGCCACCCTGCTGTCCCTTAAGGCGGCTG AGTTGGCCTCCGGGCTGTGCTCCAAAGACGAGAGAAGTTTGTGTCACTAACGCCTCCTCCATCAGTGCCGATTAGCAAA CACGCACCGACCGTCGGTTCCCGATTCGTTATCAGCCGGAGGTAACGAGCCGCTTCCTGCACGGCGCCGGGCGGCTGCG GCCCGCCCAAGGACCCGCCCCTTCGTGCTAGTGCCTATAGGGGCTGCAGGAGACCCCACCAGATGACTGTGCTATGGGG CTGCAACCGCAAACATCCACTTTCAGACTCGAGGGGCATCCAACGTACTCCAGACGACATCGGGACGAGAATGCGGGCT AGATGAACCCCCAAAGCCAGGAGCCTGCCCCCGGCTTGCCGACCTTTTCGAGAGCCGAGCGCATCACCCAAAATCCCGG GCTCTACATTCACTCGAGGGGAAATTTAAATAGTAGACCCACACACTTTAATTATTTTAAGCGAACTTCGTGAATATTT ATCCAAACCCCGGCTGATAGAGACACGC
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.