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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ALDH1A1
aldehyde dehydrogenase 1 family member A1

Gene

Official Symbol	ALDH1A1
Official Full Name	aldehyde dehydrogenase 1 family member A1
CGNC ID	49236
also known as	GGADHR, retinal dehydrogenase 1\|ALDH class 1\|ALDH-E1\|ALHDII\|RALDH 1\|aldehyde dehydrogenase family 1 member A1\|aldehyde dehydrogenase, cytosolic\|cytosolic aldehyde dehydrogenase\|ralDH1, Retinal dehydrogenase 1 , RalDH1, Aldehyde dehydrogenase, cytosolic, ALHDII, ALDH-E1, Aldehyde dehydrogenase family 1 member A1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204577
Polypeptide	NP_989908
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4119

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	43244			FBgn0051075
Human	216	ENSG00000165092		MIM:100640
Mouse	11668	ENSMUSG00000053279	All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1)	MGI:1353450
Xenopus	613078, 397728			987057
Zebrafish

Gene Ontology

Molecular Function	retinal dehydrogenase activity
Biological Process	retinol metabolic process
Cellular Component	cytoplasm

Links to other databases

Entrez Gene	395264
Ensembl Gene	ENSGALG00000015147
KEGG	gga:395264

Entry 1

GEISHA Id	Raldh1.Maden.2007	Data Source	Publication
Complete cDNA Template Probe	show CTCTTTTTTTTCCAAGTATATCATCAAGATCACACTCAATTCAATGCCGATTATGTGTTTGCTTGAAGGATCTCTTTCT CTGAGTAATATTACTTGATAAACACAGAACTGAAGTAAGAATCTAAGTATTCATTTGTTGCTGTTACTGAATCGTGCAT ATATAGAGGTCATGACTGGTACTCTGACAGTAGTGCTGATCGCAGACCTTAGGGCAGAGTGCGCAGTGGATTTGAAATA TTACAGACCTAGGAAATCAAGCCCTGATTGTAAAGCTGCTTTCCAGTAAGTGAAGAAGTTCAATTAAAATCTGGGGACC TGCCTCCTGAGAGAAAGTAATTTTACAGGAGCGTACTCAAACTCCTCACCTGGCAACATGAAGAAGCAAGGCTCACCCA GCAATCCTGCTCCTGTTTTGCCAGCACTGCCAGAACCACTCAAAGATCTGAAAATTAAGTACACTAAGATATTTATAAA CAATGAATGGCATGATTCAGTCAGCGGTAAAAAATTTGAAGTCTTTAACCCCGCAAATGAGGAGAAAATCTGTGAGGTT GCAGAAGGTGACAAGGCAGATATAGACAAGGCTGTGAAAGCAGCTAGAAAAGCTTTTGAGCTCGGATCACCCTGGCGTA CCATGGATGCTTCAGAACGAGGAAGGCTCTTGAACAAACTAGCTGATTTAGTTGAAAGAGATCGACTGACTTTAGCTAC AATGGAAGCTATTGATGGTGGTAAACTCTTTTCTACTGCCTACCTAATGGATTTAGGTGCTTGTATTAAAACAATACGC TACTGTGCAGGCTGGGCTGATAAAATCCATGGTCGAACTGTTCCAATGGATGGAAACTTTTTCACATTTACAAGACATG AGCCTGTTGGTGTGTGTGGACAAATTATTCCTTGGAACTTCCCATTGGTTATGTTTATCTGGAAGATCGCCCCTGCACT TTGTTGTGGAAACACAGTGGTTGTCAAACCAGCGGAACAAACACCTCTGAGTGCCCTTTACATGGGATCCTTAATTAAA GAGGCAGGATTTCCACCTGGAGTTGTGAATATTGTGCCAGGCTTTGGACCCACCGCTGGAGCAGCAATTTCTCACCACA TGGACATAGACAAAGTGTCCTTCACAGGCTCTACTGAGGTTGGTAAATTGATCAAAGAAGCAGCAGGGAAGACCAATCT GAAGAGAGTTACACTGGAACTTGGAGGAAAAAGTCCTAACATTATATTTGCAGATGCAGACTTGGATGAAGCTGCGGAA TTTGCACACATTGGTCTGTTTTACCACCAAGGGCAGTGTTGTATAGCAGGATCCAGAATTTTTGTGGAAGAGCCTATTT ATGATGAGTTTGTTCGCCGGAGCATTGAACGAGCAAAGAAGTACACTCTTGGGGATCCTCTGTTACCTGGTGTACAGCA AGGCCCTCAAATTGACAAGGAGCAGTTTCAAAAAATCCTGGATCTCATTGAGAGTGGGAAAAAAGAAGGAGCCAAGCTG GAATGTGGAGGAGGTCCATGGGGAAACAAGGGTTACTTCATCCAGCCCACGGTTTTTTCTAATGTTACGGATGATATGC GCATCGCCAAAGAAGAGATATTTGGACCTGTTCAACAAATCATGAAGTTCAAAACTATAGATGAAGTTATCAAGAGGGC AAATAACACTACCTATGGCTTAGCAGCAGCAGTTTTTACCAAAGACATTGATAAAGCACTGACATTTGCATCTGCTCTT CAGGCTGGGACAGTGTGGGTTAATTGTTATAGTGCATTTTCAGCTCAGTGTCCTTTTGGAGGATTTAAGATGTCAGGAA ATGGAAGAGAACTGGGAGAATATGGCCTTCAAGAATACACTGAAGTTAAGACTGTCACAATCAAAATCCCACAGAAGAA CTCATAATTATGCTTGATGTGCAGAATTTAGCTTCTTCAAATGAATCCGAAAAAAGCTATTTGAATTC
Citation	Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A. (2007). Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo. Int J Dev Biol. 2007;51(3):191-200.
Copyright	"Reprinted from Int. J. Dev. Biol., 51, Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A, Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo, 191-200, Copyright (2007), with permission from Copyright © 2007 UBC Press". All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204577). Images are quail, but sequence and map shown are chick.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

31-44

stage 44

Eye
Nasal Placcode/Nerve

Fig. 2. All images for comparison.
Quail

Entry 2

GEISHA Id	ALDH1.Peters.2002	Data Source	Publication
Complete cDNA Template Probe	show TCTGGGTATGGAGAGAGGAGAGCCCAAGCCTCAGAAATGGGGGATTGTTAGTTAGGTCTTCTCCTGGCACTAGAGCCTA AACACTACATTACCTGCACTGTGCACACACCTGAAACCTGGTCTGTTAAATTTGTGTGCTGCTGTTTTATTAAGCACTG TATTACCTAACCCAACAAATAATCTAAAGGTAGTTTTGAAGTGAGGTCAGAGTCAGCTCAGCACTGGATGTATTTAAGG TCATTAAAGATTCAGTGTCATGGTTTTGCATGGGAATCTTCCAAAGAAGCTCTGTCAAAAAGCAGTTATTCAAAAAGCT GTTATAATACATTCAATATAAACATGTCTATGCACAAAATAAATTATAAGAAGAAAATTCATATGTAAAGATCTTTGTG CATAAGCATAAAATCTAGAGATTATTCAAGGTTCAGAAAGTAGTACATTGCCTTTACACTGGGATCATTCTCTTCTACC TACTTTGTGTGTTTCTAATTCCTAGCACAAGGAAAACTACATTTAATTTTGTGTAATACAGACTAACAAAACCTGATGT TTCCCTTGCTTTTTTCTTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTTCCTTCTTTTTAT TTTTTTTAAGCTAAGGAAGAAGAAGAGGAACAAACCACTTTCTTCCATGAGTATTTTGCTGACAGAAATACTTAAATCA ATAAATTGTGGAAAAAGCTGTTGATAGCGTTGCAACAGTTGTATTTTGCAATTTGAGCTGTTCTCCATTGGGTGCTGAA GTATTTCCGAACAAAAAGCATAAGTCTGAGTTCAGTACAGCATTGGATTGAGTATATTTCTTGCATGTTCCAGCAGGGA ATTGTTGTCTTTTCTTGGAAATTAAAGGCAAATCCATTCAGAGGGCTCTCTTCTCACCACTTTGTAGCGTAGCAGTATC CGCACTTCCTCTCCCTCCCCCATTTTTCTTTTCCTTTCTCCATCCCCTTTAAATTGTAATTCAATCTCTTCCAATTCAT GATCTCTTTTCTCTTTTTGCACTCCCTCCACCCTCTCTCTCTCTCATTAGTTTAACTTGAGTTAATTAGGAATAGTAGG CAGCCCTCAATCTGTTATGTGTTAAAATAGAACAATCCAAAACAGAAAGACACAGACACAACTATGTGATTTCAATTGT CTAAAGGAGACAGAAAACCAGTGGGGATTCTCTTATCAAGGCTAACATCTCCCCAATGGTTAATGTAACTGTCTTTAAA ATGTTCCACAAATGCAGATCTAGGATAACAATCTTTCCGTCATGTTTCCTTTTCTTTTTCTTTTCTTTTCTTTTTTTTT TTTTTTTTCATTTCATCATTGGCAAGAATGAGTGAATTGGATTGACATGGAGGTGAGAGAGGAAGAGAAACAGTCTACA CGTCAAAATGACAATGTATATTACATGGTTAACAGAATGAGTGGTACGTGCAATGGCTGCGGGTATTTTCATCTGCTGT GTGTACAATAAGCTCTTTTTTTTCCAAGTATATCATCAAGATCACACTCAATTCAATGCCGATTATGTGTTTGCTTGAA GGATCTCTTTCTCTGAGTAATATTACTTGATAAACACAGAACTGAAGTAAGAATCTAAGTATTCATTTGTTGCTGTTAC TGAATCGTGCATATATAGAGGTCATGACTGGTACTCTGACAGTAGTGCTGATCGCAGACCTTAGGGCAGAGTGCGCAGT GGATTTGAAATATTACAGACCTAGGAAATCAAGCCCTGATTGTAAAGCTGCTTTCCAGTAAGTGAAGAAGTTCAATTAA AATCTGGGGACCTGCCTCCTGAGAGAAAGTAATTTTACAGGAGCGTACTCAAACTCCTCACCTGGCAACATGAAGAAGC AAGGCTCACCCAGCAATCCTGCTCCTGTTTTGCCAGCACTGCCAGAACCACTCAAAGATCTGAAAATTAAGTACACTAA GATATTTATAAACAATGAATGGCATGATTCAGTCAGCGGTAAAAAATTTGAAGTCTTTAACCCCGCAAATGAGGAGAAA ATCTGTGAGGTTGCAGAAGGTGACAAGGCAGATATAGACAAGGCTGTGAAAGCAGCTAGAAAAGCTTTTGAGCTCGGAT CACCCTGGCGTACCATGGATGCTTCAGAACGAGGAAGGCTCTTGAACAAACTAGCTGATTTAGTTGAAAGAGATCGACT GACTTTAGCTACAATGGAAGCTATTGATGGTGGTAAACTCTTTTCTACTGCCTACCTAATGGATTTAGGTGCTTGTATT AAAACAATACGCTACTGTGCAGGCTGGGCTGATAAAATCCATGGTCGAACTGTTCCAATGGATGGAAACTTTTTCACAT TTACAAGACATGAGCCTGTTGGTGTGTGTGGACAAATTATTCCTTGGAACTTCCCATTGGTTATGTTTATCTGGAAGAT CGCCCCTGCACTTTGTTGTGGAAACACAGTGGTTGTCAAACCAGCGGAACAAACACCTCTGAGTGCCCTTTACATGGGA TCCTTAATTAAAGAGGCAGGATTTCCACCTGGAGTTGTGAATATTGTGCCAGGCTTTGGACCCACCGCTGGAGCAGCAA TTTCTCACCACATGGACATAGACAAAGTGTCCTTCACAGGCTCTACTGAGGTTGGTAAATTGATCAAAGAAGCAGCAGG GAAGACCAATCTGAAGAGAGTTACACTGGAACTTGGAGGAAAAAGTCCTAACATTATATTTGCAGATGCAGACTTGGAT GAAGCTGCGGAATTTGCACACATTGGTCTGTTTTACCACCAAGGGCAGTGTTGTATAGCAGGATCCAGAATTTTTGTGG AAGAGCCTATTTATGATGAGTTTGTTCGCCGGAGCATTGAACGAGCAAAGAAGTACACTCTTGGGGATCCTCTGTTACC TGGTGTACAGCAAGGCCCTCAAATTGACAAGGAGCAGTTTCAAAAAATCCTGGATCTCATTGAGAGTGGGAAAAAAGAA GGAGCCAAGCTGGAATGTGGAGGAGGTCCATGGGGAAACAAGGGTTACTTCATCCAGCCCACGGTTTTTTCTAATGTTA CGGATGATATGCGCATCGCCAAAGAAGAGATATTTGGACCTGTTCAACAAATCATGAAGTTCAAAACTATAGATGAAGT TATCAAGAGGGCAAATAACACTACCTATGGCTTAGCAGCAGCAGTTTTTACCAAAGACATTGATAAAGCACTGACATTT GCATCTGCTCTTCAGGCTGGGACAGTGTGGGTTAATTGTTATAGTGCATTTTCAGCTCAGTGTCCTTTTGGAGGATTTA AGATGTCAGGAAATGGAAGAGAACTGGGAGAATATGGCCTTCAAGAATACACTGAAGTTAAGACTGTCACAATCAAAAT CCCACAGAAGAACTCATAATTATGCTTGATGTGCAGAATTTAGCTTCTTCAAATGAATCCGAAAAAAGCTATTTGAATT C
Citation	Peters MA, Cepko CL (2002). The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments. Dev Biol. 2002 Nov 1;251(1):59-73.
Copyright	"Reprinted from Developmental Biology, 251(1), Peters MA, Cepko CL, The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments, 59-73, Copyright (2002), with permission from Elsevier". Copyright © ( 2002) Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (X58869).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 17

19-24

stage 19

stage 22

31-44

stage 44

stage 44

Entry 3

GEISHA Id	RALDH1.Blentic.2003	Data Source	Publication
Complete cDNA Template Probe	show TCTGGGTATGGAGAGAGGAGAGCCCAAGCCTCAGAAATGGGGGATTGTTAGTTAGGTCTTCTCCTGGCACTAGAGCCTA AACACTACATTACCTGCACTGTGCACACACCTGAAACCTGGTCTGTTAAATTTGTGTGCTGCTGTTTTATTAAGCACTG TATTACCTAACCCAACAAATAATCTAAAGGTAGTTTTGAAGTGAGGTCAGAGTCAGCTCAGCACTGGATGTATTTAAGG TCATTAAAGATTCAGTGTCATGGTTTTGCATGGGAATCTTCCAAAGAAGCTCTGTCAAAAAGCAGTTATTCAAAAAGCT GTTATAATACATTCAATATAAACATGTCTATGCACAAAATAAATTATAAGAAGAAAATTCATATGTAAAGATCTTTGTG CATAAGCATAAAATCTAGAGATTATTCAAGGTTCAGAAAGTAGTACATTGCCTTTACACTGGGATCATTCTCTTCTACC TACTTTGTGTGTTTCTAATTCCTAGCACAAGGAAAACTACATTTAATTTTGTGTAATACAGACTAACAAAACCTGATGT TTCCCTTGCTTTTTTCTTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTTCCTTCTTTTTAT TTTTTTTAAGCTAAGGAAGAAGAAGAGGAACAAACCACTTTCTTCCATGAGTATTTTGCTGACAGAAATACTTAAATCA ATAAATTGTGGAAAAAGCTGTTGATAGCGTTGCAACAGTTGTATTTTGCAATTTGAGCTGTTCTCCATTGGGTGCTGAA GTATTTCCGAACAAAAAGCATAAGTCTGAGTTCAGTACAGCATTGGATTGAGTATATTTCTTGCATGTTCCAGCAGGGA ATTGTTGTCTTTTCTTGGAAATTAAAGGCAAATCCATTCAGAGGGCTCTCTTCTCACCACTTTGTAGCGTAGCAGTATC CGCACTTCCTCTCCCTCCCCCATTTTTCTTTTCCTTTCTCCATCCCCTTTAAATTGTAATTCAATCTCTTCCAATTCAT GATCTCTTTTCTCTTTTTGCACTCCCTCCACCCTCTCTCTCTCTCATTAGTTTAACTTGAGTTAATTAGGAATAGTAGG CAGCCCTCAATCTGTTATGTGTTAAAATAGAACAATCCAAAACAGAAAGACACAGACACAACTATGTGATTTCAATTGT CTAAAGGAGACAGAAAACCAGTGGGGATTCTCTTATCAAGGCTAACATCTCCCCAATGGTTAATGTAACTGTCTTTAAA ATGTTCCACAAATGCAGATCTAGGATAACAATCTTTCCGTCATGTTTCCTTTTCTTTTTCTTTTCTTTTCTTTTTTTTT TTTTTTTTCATTTCATCATTGGCAAGAATGAGTGAATTGGATTGACATGGAGGTGAGAGAGGAAGAGAAACAGTCTACA CGTCAAAATGACAATGTATATTACATGGTTAACAGAATGAGTGGTACGTGCAATGGCTGCGGGTATTTTCATCTGCTGT GTGTACAATAAGCTCTTTTTTTTCCAAGTATATCATCAAGATCACACTCAATTCAATGCCGATTATGTGTTTGCTTGAA GGATCTCTTTCTCTGAGTAATATTACTTGATAAACACAGAACTGAAGTAAGAATCTAAGTATTCATTTGTTGCTGTTAC TGAATCGTGCATATATAGAGGTCATGACTGGTACTCTGACAGTAGTGCTGATCGCAGACCTTAGGGCAGAGTGCGCAGT GGATTTGAAATATTACAGACCTAGGAAATCAAGCCCTGATTGTAAAGCTGCTTTCCAGTAAGTGAAGAAGTTCAATTAA AATCTGGGGACCTGCCTCCTGAGAGAAAGTAATTTTACAGGAGCGTACTCAAACTCCTCACCTGGCAACATGAAGAAGC AAGGCTCACCCAGCAATCCTGCTCCTGTTTTGCCAGCACTGCCAGAACCACTCAAAGATCTGAAAATTAAGTACACTAA GATATTTATAAACAATGAATGGCATGATTCAGTCAGCGGTAAAAAATTTGAAGTCTTTAACCCCGCAAATGAGGAGAAA ATCTGTGAGGTTGCAGAAGGTGACAAGGCAGATATAGACAAGGCTGTGAAAGCAGCTAGAAAAGCTTTTGAGCTCGGAT CACCCTGGCGTACCATGGATGCTTCAGAACGAGGAAGGCTCTTGAACAAACTAGCTGATTTAGTTGAAAGAGATCGACT GACTTTAGCTACAATGGAAGCTATTGATGGTGGTAAACTCTTTTCTACTGCCTACCTAATGGATTTAGGTGCTTGTATT AAAACAATACGCTACTGTGCAGGCTGGGCTGATAAAATCCATGGTCGAACTGTTCCAATGGATGGAAACTTTTTCACAT TTACAAGACATGAGCCTGTTGGTGTGTGTGGACAAATTATTCCTTGGAACTTCCCATTGGTTATGTTTATCTGGAAGAT CGCCCCTGCACTTTGTTGTGGAAACACAGTGGTTGTCAAACCAGCGGAACAAACACCTCTGAGTGCCCTTTACATGGGA TCCTTAATTAAAGAGGCAGGATTTCCACCTGGAGTTGTGAATATTGTGCCAGGCTTTGGACCCACCGCTGGAGCAGCAA TTTCTCACCACATGGACATAGACAAAGTGTCCTTCACAGGCTCTACTGAGGTTGGTAAATTGATCAAAGAAGCAGCAGG GAAGACCAATCTGAAGAGAGTTACACTGGAACTTGGAGGAAAAAGTCCTAACATTATATTTGCAGATGCAGACTTGGAT GAAGCTGCGGAATTTGCACACATTGGTCTGTTTTACCACCAAGGGCAGTGTTGTATAGCAGGATCCAGAATTTTTGTGG AAGAGCCTATTTATGATGAGTTTGTTCGCCGGAGCATTGAACGAGCAAAGAAGTACACTCTTGGGGATCCTCTGTTACC TGGTGTACAGCAAGGCCCTCAAATTGACAAGGAGCAGTTTCAAAAAATCCTGGATCTCATTGAGAGTGGGAAAAAAGAA GGAGCCAAGCTGGAATGTGGAGGAGGTCCATGGGGAAACAAGGGTTACTTCATCCAGCCCACGGTTTTTTCTAATGTTA CGGATGATATGCGCATCGCCAAAGAAGAGATATTTGGACCTGTTCAACAAATCATGAAGTTCAAAACTATAGATGAAGT TATCAAGAGGGCAAATAACACTACCTATGGCTTAGCAGCAGCAGTTTTTACCAAAGACATTGATAAAGCACTGACATTT GCATCTGCTCTTCAGGCTGGGACAGTGTGGGTTAATTGTTATAGTGCATTTTCAGCTCAGTGTCCTTTTGGAGGATTTA AGATGTCAGGAAATGGAAGAGAACTGGGAGAATATGGCCTTCAAGAATACACTGAAGTTAAGACTGTCACAATCAAAAT CCCACAGAAGAACTCATAATTATGCTTGATGTGCAGAATTTAGCTTCTTCAAATGAATCCGAAAAAAGCTATTTGAATT C
Citation	Blentic A, Gale E, Maden M. Retinoic acid signalling centres in the avian embryo identified by sites of expression of synthesising and catabolising enzymes. Dev Dyn. 2003 May;227(1):114-27.
Copyright	Copyright © 2003 John Wiley & Sons, Inc. All Rights Reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204577)

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

stage 12

stage 12

stage 12

13-18

stage 15

stage 18

stage 18

19-20

stage 20

Endoderm
Gut
Intermediate Mesoderm

Entry 4

GEISHA Id	RALDH1.Wilson.2007	Data Source	Direct Submission
Complete cDNA Template Probe	show TCTGGGTATGGAGAGAGGAGAGCCCAAGCCTCAGAAATGGGGGATTGTTAGTTAGGTCTTCTCCTGGCACTAGAGCCTA AACACTACATTACCTGCACTGTGCACACACCTGAAACCTGGTCTGTTAAATTTGTGTGCTGCTGTTTTATTAAGCACTG TATTACCTAACCCAACAAATAATCTAAAGGTAGTTTTGAAGTGAGGTCAGAGTCAGCTCAGCACTGGATGTATTTAAGG TCATTAAAGATTCAGTGTCATGGTTTTGCATGGGAATCTTCCAAAGAAGCTCTGTCAAAAAGCAGTTATTCAAAAAGCT GTTATAATACATTCAATATAAACATGTCTATGCACAAAATAAATTATAAGAAGAAAATTCATATGTAAAGATCTTTGTG CATAAGCATAAAATCTAGAGATTATTCAAGGTTCAGAAAGTAGTACATTGCCTTTACACTGGGATCATTCTCTTCTACC TACTTTGTGTGTTTCTAATTCCTAGCACAAGGAAAACTACATTTAATTTTGTGTAATACAGACTAACAAAACCTGATGT TTCCCTTGCTTTTTTCTTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTTCCTTCTTTTTAT TTTTTTTAAGCTAAGGAAGAAGAAGAGGAACAAACCACTTTCTTCCATGAGTATTTTGCTGACAGAAATACTTAAATCA ATAAATTGTGGAAAAAGCTGTTGATAGCGTTGCAACAGTTGTATTTTGCAATTTGAGCTGTTCTCCATTGGGTGCTGAA GTATTTCCGAACAAAAAGCATAAGTCTGAGTTCAGTACAGCATTGGATTGAGTATATTTCTTGCATGTTCCAGCAGGGA ATTGTTGTCTTTTCTTGGAAATTAAAGGCAAATCCATTCAGAGGGCTCTCTTCTCACCACTTTGTAGCGTAGCAGTATC CGCACTTCCTCTCCCTCCCCCATTTTTCTTTTCCTTTCTCCATCCCCTTTAAATTGTAATTCAATCTCTTCCAATTCAT GATCTCTTTTCTCTTTTTGCACTCCCTCCACCCTCTCTCTCTCTCATTAGTTTAACTTGAGTTAATTAGGAATAGTAGG CAGCCCTCAATCTGTTATGTGTTAAAATAGAACAATCCAAAACAGAAAGACACAGACACAACTATGTGATTTCAATTGT CTAAAGGAGACAGAAAACCAGTGGGGATTCTCTTATCAAGGCTAACATCTCCCCAATGGTTAATGTAACTGTCTTTAAA ATGTTCCACAAATGCAGATCTAGGATAACAATCTTTCCGTCATGTTTCCTTTTCTTTTTCTTTTCTTTTCTTTTTTTTT TTTTTTTTCATTTCATCATTGGCAAGAATGAGTGAATTGGATTGACATGGAGGTGAGAGAGGAAGAGAAACAGTCTACA CGTCAAAATGACAATGTATATTACATGGTTAACAGAATGAGTGGTACGTGCAATGGCTGCGGGTATTTTCATCTGCTGT GTGTACAATAAGCTCTTTTTTTTCCAAGTATATCATCAAGATCACACTCAATTCAATGCCGATTATGTGTTTGCTTGAA GGATCTCTTTCTCTGAGTAATATTACTTGATAAACACAGAACTGAAGTAAGAATCTAAGTATTCATTTGTTGCTGTTAC TGAATCGTGCATATATAGAGGTCATGACTGGTACTCTGACAGTAGTGCTGATCGCAGACCTTAGGGCAGAGTGCGCAGT GGATTTGAAATATTACAGACCTAGGAAATCAAGCCCTGATTGTAAAGCTGCTTTCCAGTAAGTGAAGAAGTTCAATTAA AATCTGGGGACCTGCCTCCTGAGAGAAAGTAATTTTACAGGAGCGTACTCAAACTCCTCACCTGGCAACATGAAGAAGC AAGGCTCACCCAGCAATCCTGCTCCTGTTTTGCCAGCACTGCCAGAACCACTCAAAGATCTGAAAATTAAGTACACTAA GATATTTATAAACAATGAATGGCATGATTCAGTCAGCGGTAAAAAATTTGAAGTCTTTAACCCCGCAAATGAGGAGAAA ATCTGTGAGGTTGCAGAAGGTGACAAGGCAGATATAGACAAGGCTGTGAAAGCAGCTAGAAAAGCTTTTGAGCTCGGAT CACCCTGGCGTACCATGGATGCTTCAGAACGAGGAAGGCTCTTGAACAAACTAGCTGATTTAGTTGAAAGAGATCGACT GACTTTAGCTACAATGGAAGCTATTGATGGTGGTAAACTCTTTTCTACTGCCTACCTAATGGATTTAGGTGCTTGTATT AAAACAATACGCTACTGTGCAGGCTGGGCTGATAAAATCCATGGTCGAACTGTTCCAATGGATGGAAACTTTTTCACAT TTACAAGACATGAGCCTGTTGGTGTGTGTGGACAAATTATTCCTTGGAACTTCCCATTGGTTATGTTTATCTGGAAGAT CGCCCCTGCACTTTGTTGTGGAAACACAGTGGTTGTCAAACCAGCGGAACAAACACCTCTGAGTGCCCTTTACATGGGA TCCTTAATTAAAGAGGCAGGATTTCCACCTGGAGTTGTGAATATTGTGCCAGGCTTTGGACCCACCGCTGGAGCAGCAA TTTCTCACCACATGGACATAGACAAAGTGTCCTTCACAGGCTCTACTGAGGTTGGTAAATTGATCAAAGAAGCAGCAGG GAAGACCAATCTGAAGAGAGTTACACTGGAACTTGGAGGAAAAAGTCCTAACATTATATTTGCAGATGCAGACTTGGAT GAAGCTGCGGAATTTGCACACATTGGTCTGTTTTACCACCAAGGGCAGTGTTGTATAGCAGGATCCAGAATTTTTGTGG AAGAGCCTATTTATGATGAGTTTGTTCGCCGGAGCATTGAACGAGCAAAGAAGTACACTCTTGGGGATCCTCTGTTACC TGGTGTACAGCAAGGCCCTCAAATTGACAAGGAGCAGTTTCAAAAAATCCTGGATCTCATTGAGAGTGGGAAAAAAGAA GGAGCCAAGCTGGAATGTGGAGGAGGTCCATGGGGAAACAAGGGTTACTTCATCCAGCCCACGGTTTTTTCTAATGTTA CGGATGATATGCGCATCGCCAAAGAAGAGATATTTGGACCTGTTCAACAAATCATGAAGTTCAAAACTATAGATGAAGT TATCAAGAGGGCAAATAACACTACCTATGGCTTAGCAGCAGCAGTTTTTACCAAAGACATTGATAAAGCACTGACATTT GCATCTGCTCTTCAGGCTGGGACAGTGTGGGTTAATTGTTATAGTGCATTTTCAGCTCAGTGTCCTTTTGGAGGATTTA AGATGTCAGGAAATGGAAGAGAACTGGGAGAATATGGCCTTCAAGAATACACTGAAGTTAAGACTGTCACAATCAAAAT CCCACAGAAGAACTCATAATTATGCTTGATGTGCAGAATTTAGCTTCTTCAAATGAATCCGAAAAAAGCTATTTGAATT C
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204577.4

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 21

25-30

stage 26

stage 29

stage 30

stage 30

Hindbrain
Midbrain

31

stage 31

stage 31

stage 31

Entry 5

GEISHA Id	RALDH1.Sánchez-Guardado.2009	Data Source	Publication
Complete cDNA Template Probe	show TCTGGGTATGGAGAGAGGAGAGCCCAAGCCTCAGAAATGGGGGATTGTTAGTTAGGTCTTCTCCTGGCACTAGAGCCTA AACACTACATTACCTGCACTGTGCACACACCTGAAACCTGGTCTGTTAAATTTGTGTGCTGCTGTTTTATTAAGCACTG TATTACCTAACCCAACAAATAATCTAAAGGTAGTTTTGAAGTGAGGTCAGAGTCAGCTCAGCACTGGATGTATTTAAGG TCATTAAAGATTCAGTGTCATGGTTTTGCATGGGAATCTTCCAAAGAAGCTCTGTCAAAAAGCAGTTATTCAAAAAGCT GTTATAATACATTCAATATAAACATGTCTATGCACAAAATAAATTATAAGAAGAAAATTCATATGTAAAGATCTTTGTG CATAAGCATAAAATCTAGAGATTATTCAAGGTTCAGAAAGTAGTACATTGCCTTTACACTGGGATCATTCTCTTCTACC TACTTTGTGTGTTTCTAATTCCTAGCACAAGGAAAACTACATTTAATTTTGTGTAATACAGACTAACAAAACCTGATGT TTCCCTTGCTTTTTTCTTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTTCCTTCTTTTTAT TTTTTTTAAGCTAAGGAAGAAGAAGAGGAACAAACCACTTTCTTCCATGAGTATTTTGCTGACAGAAATACTTAAATCA ATAAATTGTGGAAAAAGCTGTTGATAGCGTTGCAACAGTTGTATTTTGCAATTTGAGCTGTTCTCCATTGGGTGCTGAA GTATTTCCGAACAAAAAGCATAAGTCTGAGTTCAGTACAGCATTGGATTGAGTATATTTCTTGCATGTTCCAGCAGGGA ATTGTTGTCTTTTCTTGGAAATTAAAGGCAAATCCATTCAGAGGGCTCTCTTCTCACCACTTTGTAGCGTAGCAGTATC CGCACTTCCTCTCCCTCCCCCATTTTTCTTTTCCTTTCTCCATCCCCTTTAAATTGTAATTCAATCTCTTCCAATTCAT GATCTCTTTTCTCTTTTTGCACTCCCTCCACCCTCTCTCTCTCTCATTAGTTTAACTTGAGTTAATTAGGAATAGTAGG CAGCCCTCAATCTGTTATGTGTTAAAATAGAACAATCCAAAACAGAAAGACACAGACACAACTATGTGATTTCAATTGT CTAAAGGAGACAGAAAACCAGTGGGGATTCTCTTATCAAGGCTAACATCTCCCCAATGGTTAATGTAACTGTCTTTAAA ATGTTCCACAAATGCAGATCTAGGATAACAATCTTTCCGTCATGTTTCCTTTTCTTTTTCTTTTCTTTTCTTTTTTTTT TTTTTTTTCATTTCATCATTGGCAAGAATGAGTGAATTGGATTGACATGGAGGTGAGAGAGGAAGAGAAACAGTCTACA CGTCAAAATGACAATGTATATTACATGGTTAACAGAATGAGTGGTACGTGCAATGGCTGCGGGTATTTTCATCTGCTGT GTGTACAATAAGCTCTTTTTTTTCCAAGTATATCATCAAGATCACACTCAATTCAATGCCGATTATGTGTTTGCTTGAA GGATCTCTTTCTCTGAGTAATATTACTTGATAAACACAGAACTGAAGTAAGAATCTAAGTATTCATTTGTTGCTGTTAC TGAATCGTGCATATATAGAGGTCATGACTGGTACTCTGACAGTAGTGCTGATCGCAGACCTTAGGGCAGAGTGCGCAGT GGATTTGAAATATTACAGACCTAGGAAATCAAGCCCTGATTGTAAAGCTGCTTTCCAGTAAGTGAAGAAGTTCAATTAA AATCTGGGGACCTGCCTCCTGAGAGAAAGTAATTTTACAGGAGCGTACTCAAACTCCTCACCTGGCAACATGAAGAAGC AAGGCTCACCCAGCAATCCTGCTCCTGTTTTGCCAGCACTGCCAGAACCACTCAAAGATCTGAAAATTAAGTACACTAA GATATTTATAAACAATGAATGGCATGATTCAGTCAGCGGTAAAAAATTTGAAGTCTTTAACCCCGCAAATGAGGAGAAA ATCTGTGAGGTTGCAGAAGGTGACAAGGCAGATATAGACAAGGCTGTGAAAGCAGCTAGAAAAGCTTTTGAGCTCGGAT CACCCTGGCGTACCATGGATGCTTCAGAACGAGGAAGGCTCTTGAACAAACTAGCTGATTTAGTTGAAAGAGATCGACT GACTTTAGCTACAATGGAAGCTATTGATGGTGGTAAACTCTTTTCTACTGCCTACCTAATGGATTTAGGTGCTTGTATT AAAACAATACGCTACTGTGCAGGCTGGGCTGATAAAATCCATGGTCGAACTGTTCCAATGGATGGAAACTTTTTCACAT TTACAAGACATGAGCCTGTTGGTGTGTGTGGACAAATTATTCCTTGGAACTTCCCATTGGTTATGTTTATCTGGAAGAT CGCCCCTGCACTTTGTTGTGGAAACACAGTGGTTGTCAAACCAGCGGAACAAACACCTCTGAGTGCCCTTTACATGGGA TCCTTAATTAAAGAGGCAGGATTTCCACCTGGAGTTGTGAATATTGTGCCAGGCTTTGGACCCACCGCTGGAGCAGCAA TTTCTCACCACATGGACATAGACAAAGTGTCCTTCACAGGCTCTACTGAGGTTGGTAAATTGATCAAAGAAGCAGCAGG GAAGACCAATCTGAAGAGAGTTACACTGGAACTTGGAGGAAAAAGTCCTAACATTATATTTGCAGATGCAGACTTGGAT GAAGCTGCGGAATTTGCACACATTGGTCTGTTTTACCACCAAGGGCAGTGTTGTATAGCAGGATCCAGAATTTTTGTGG AAGAGCCTATTTATGATGAGTTTGTTCGCCGGAGCATTGAACGAGCAAAGAAGTACACTCTTGGGGATCCTCTGTTACC TGGTGTACAGCAAGGCCCTCAAATTGACAAGGAGCAGTTTCAAAAAATCCTGGATCTCATTGAGAGTGGGAAAAAAGAA GGAGCCAAGCTGGAATGTGGAGGAGGTCCATGGGGAAACAAGGGTTACTTCATCCAGCCCACGGTTTTTTCTAATGTTA CGGATGATATGCGCATCGCCAAAGAAGAGATATTTGGACCTGTTCAACAAATCATGAAGTTCAAAACTATAGATGAAGT TATCAAGAGGGCAAATAACACTACCTATGGCTTAGCAGCAGCAGTTTTTACCAAAGACATTGATAAAGCACTGACATTT GCATCTGCTCTTCAGGCTGGGACAGTGTGGGTTAATTGTTATAGTGCATTTTCAGCTCAGTGTCCTTTTGGAGGATTTA AGATGTCAGGAAATGGAAGAGAACTGGGAGAATATGGCCTTCAAGAATACACTGAAGTTAAGACTGTCACAATCAAAAT CCCACAGAAGAACTCATAATTATGCTTGATGTGCAGAATTTAGCTTCTTCAAATGAATCCGAAAAAAGCTATTTGAATT C
Citation	Sánchez-Guardado LO, Ferran JL, Mijares J, Puelles L, Rodríguez-Gallardo L, Hidalgo-Sánchez M. Raldh3 gene expression pattern in the developing chicken inner ear. J Comp Neurol. 2009 May 1;514(1):49-65. doi: 10.1002/cne.21984.
Copyright	Copyright © 19992013 John Wiley & Sons, Inc. All Rights Reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204577.4

Stage

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13-18

stage 18

stage 18

stage 18

Ear/Otic Placode
Eye

Entry 6

GEISHA Id	RALDH1.Smith.2018	Data Source	Publication
Complete cDNA Template Probe	show TTGCAGAAGGTGACAAGGCAGATATAGACAAGGCTGTGAAAGCAGCTAGAAAAGCTTTTGAGCTCGGATCACCCTGGCG TACCATGGATGCTTCAGAACGAGGAAGGCTCTTGAACAAACTAGCTGATTTAGTTGAAAGAGATCGACTGACTTTAGCT ACAATGGAAGCTATTGATGGTGGTAAACTCTTTTCTACTGCCTACCTAATGGATTTAGGTGCTTGTATTAAAACAATAC GCTACTGTGCAGGCTGGGCTGATAAAATCCATGGTCGAACTGTTCCAATGGATGGAAACTTTTTCACATTTACAAGACA TGAGCCTGTTGGTGTGTGTGGACAAATTATTCCTTGGAACTTCCCATTGGTTATGTTTATCTGGAAGATCGCCCCTGCA CTTTGTTGTGGAAACACAGTGGTTGTCAAACCAGCGGAACAAACACCTCTGAGTGCCCTTTACATGGGATCCTTAATTA AAGAGGCAGGATTTCCACCTGGAGTTGTGAATATTGTGCCAGGCTTTGGACCCACCGCTGGAGCAGCAATTTCTCACCA CATGGACATAGACAAAGTGTCCTTCACAGGCTCTACTGAGGTTGGTAAATTGATCAAAGAAGCAGCAGGGAAGACCAAT CTGAAGAGAGTTACACTGGAACTTGGAGGAAAAAGTCCTAACATTATATTTGCAGATGCAGACTTGGATGAAGCTGTGG AATTTGCACACATTGGTCTGTTTTACCACCAAGGGCAGTGTTGTATAGCAGGATCCAGAATTTTTGTGGAAGAGCCTAT TTATGATGAGTTTGTTCGCCGGAGCATTGAACGAGCAAAGAAGTACACTCTTGGGGATCCTCTGTTACCTGGTGTACAG CAAGGCCCTCAAATTGACAAGGAGCAGTTTCAAAAAATCCTGGATCTCATTGAGAGTGGGAAAAAAGAAGGAGCCAAGC TGGAATGTGGAGGAGGTCCATGGGGAAACAAGGGT
Citation	Jonathan N Smith, Heather M Walker, Hannah Thompson, J Martin Collinson, Neil Vargesson, Lynda Erskine. Lens-regulated retinoic acid signalling controls expansion of the developing eye. Development. 2018 Oct 10;145(19):dev167171. DOI: 10.1242/dev.167171.
Copyright	Copyright © 2018. Published by The Company of Biologists Ltd.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Smith et al. 2018. RALDH1 is also known as ALDH1A1.

Stage

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19-23

stage 23

all

Data from NCBI Unigene EST Profile
Unigene ID: Gga.4119

Mouse

Emage	MGI:1353450
Eurexpress	MGI:1353450
MGI GXD	MGI:1353450

Frog

Xenbase

Fruit Fly

BDGP	FBgn0051075

Zebra Finch

ZEBrA

Zebrafish

ZFIN

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