GEISHA - A Chicken Embryo Gene Expression Database
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GATA6
GATA binding protein 6

Gene
Official SymbolGATA6
Official Full NameGATA binding protein 6
CGNC ID49785
also known asGATA-6, transcription factor GATA-6|GATA-6 transcription factor|GATA-binding factor 6
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205420
PolypeptideNP_990751
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2061
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human2627ENSG00000141448MIM:601656
Mouse14465ENSMUSG00000005836All phenotypic alleles (11):Targeted, knock-out(5) Targeted, other(6) MGI:107516
Xenopus395062, 399082, 397845485062
Zebrafish58076ZDB-GENE-000622-1ZFIN:ZDB-GENE-000622-1
Gene Ontology
Molecular FunctionRNA polymerase II core promoter sequence-specific DNA binding, more...RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity, RNA polymerase II repressing transcription factor binding, chromatin binding, protein kinase binding, zinc ion binding
Biological ProcessClara cell differentiation, Type II pneumocyte differentiation, cardiac muscle cell differentiation, more...cardiac muscle hypertrophy in response to stress, cardiac vascular smooth muscle cell differentiation, cellular response to BMP stimulus, cellular response to gonadotropin stimulus, cellular response to hypoxia, endodermal cell fate determination, in utero embryonic development, intestinal epithelial cell differentiation, liver development, lung saccule development, male gonad development, negative regulation of apoptotic process, negative regulation of transcription from RNA polymerase II promoter, negative regulation of transforming growth factor beta1 production, negative regulation of transforming growth factor beta2 production, organ formation, outflow tract septum morphogenesis, pancreatic A cell differentiation, phospholipid metabolic process, positive regulation of angiogenesis, positive regulation of cardiac muscle cell proliferation, positive regulation of cardioblast differentiation, positive regulation of cell cycle arrest, positive regulation of transcription from RNA polymerase II promoter, response to drug, response to estrogen, tube morphogenesis, type B pancreatic cell differentiation
Cellular Componentnucleus, transcription factor complex
Links to other databases
Entrez Gene396390
Ensembl Gene
KEGGgga:396390

Entry 1

GEISHA IdGATA6.Chapman.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGTACCAGACCTTGGCCATCTCGGCCTCGCAGGGCCCCGCGCCCTACGACGGATCTCCGGGCGGCTTCATGCACTCCG
CGCCCAGCTCTCCCGTCTACGTGCCCACCACCCGCGTGGGCTCCGTGCTGCCCACGCTGCCCTACCTGCAGGGCGGCGG
CGCGGCCCAGCCCGGCCACGCTCCGGCCGGCCACGTCTGGTCGCAGCCGGCGGCCGAGAGCCCCTCGTACGGCGCCGCG
GGCGGCGCGCACCCCTCGGGCCGCTTCCCCTACTCGGCCAGCCCGCCCGTGGCCAACGGCGCCTCGCGGGAGCAGTACG
GCGGCGGCCTGGCGGCGAGGGAGCAGTACGGAGCGCTGCCGCGGCCGCTCAACGGCTCCTACCCGGCGCCCTACGCCTC
CTACGTGGGGCCGCAGCTCGGCCCCGCCTGGCCCGCGGCGCCCTTCGAGAACTCCGTGCTGCACTGCCTGCAGGGCCGC
GCCGCGCCCATCCCCGTGCGGGCTCCGAGCGCAGAGCTGCTGGAAGACCTCTCCGAGAGCCGCGAGTGCGTCAACTGCG
GCTCCATCCAGACCCCGCTGTGGAGGAGGGACGGCACCGGGAATTACCTGTGCAACGCCTGCGGGCTCTACACCAAAAT
GAACGGCCTGAGCCGGCCCCTCATCAAACCCCAGAAGAGAGTGCCCTCGTCGCGGCGGCTCGGCCTGTCCTGTGCCAAC
TGCCACACCACCACCACCACCCTCTGGCGCCGGAACGCCGAGGGTGAGCCCGTCTGCAACGCCTGCGGCCTCTACATGA
AGCTTCATGGGGTTCCCCGACCACTTGCTATGAAAAAAGAAGGAATTCAGACGAGGAAACGAAAACCTAAGAACATCAA
TAAGTCGAAGGCATGCTCTGGTAACAGCACTACTGCAGTTCCTATGACTCCAACATCTACGTCTTCTACTAACTCAGAT
GACTGTAGCAAAAACGCCTCCCCAAGCACGCAGCCGGCAGCCTCGGGGGCGAGCTCGTCAGTGATGTCCGGCCCAGGAG
AGAGCACCAGTCCCGAAAGCAGCAACCTTAAGTATTCAGGTCAAGATGGGCTGTACACAGGAGTCAGCCTGACCTCCAC
GGCCGAGGTGACGGCGTCCGTCAGGCAGGATCACTGGTGTGCCCTGGCTCTGGCGTGA
CitationChapman SC, Matsumoto K, Cai Q, Schoenwolf GC. Specification of germ layer identity in the chick gastrula. BMC Dev Biol. 2007 Jul 30;7:91.
Copyright© 2007 Chapman et al; licensee BioMed Central Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205420).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Kohler's Sickle
 
1-3
stage 1
stage 3
stage 3
stage 3
stage 3
stage 3
Early Endoderm
Early Mesoderm
Hypoblast
Kohler's Sickle
Primitive Streak
Stage 3b chicken embryo
Stage 3d chicken embryo
sagittal section of Fig. 1 (R).
sagittal section of Fig. 1 (U).
4
stage 4
stage 4
Early Endoderm
Early Mesoderm
Kohler's Sickle
lateral sickle horn
sagittal section of Fig.1 (W).

Entry 2

GEISHA IdGATA6.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GCAGAGCGGAGCTGCATGGCCGTGGCTGAAGGCGGCTGCTGCGCGGCGGAGCGGTGCGCTGCGTCCTCGTACCCCTTCG
CCGCCCGGGCGCCTTCTTCGCCCTCCTCCTCCACCTCCACCTCCGGGACCCCGGCTCCGGAGCCCGGCGGCAGCCCCCG
GCCCGCCCCGCCGCACCTCGGGGCCGTCCCGGCGCCCGGCCCGCCCGCCCGCCGGGAGGAGGACGTCCCGCTGCCGCTC
TCGCTGCCTCCGGACTCGGAGCGGCCGCCGGCGATGTACCAGACCTTGGCCATCTCGGCCTCGCAGGGCCCCGCGCCCT
ACGACGGATCTCCGGGCGGCTTCATGCACTCCGCGCCCAGCTCTCCCGTCTACGTGCCCACCACCCGCGTGGGCTCCGT
GCTGCCCACGCTGCCCTACCTGCAGGGCGGCGGCGCGGCCCAGCCCGGCCACGCTCCGGCCGGCCACGTCTGGTCGCAG
CCGGCGGCCGAGAGCCCCTCGTACGGCGCCGCGGGCGGCGCGCACCCCTCGGGCCGCTTCCCCTACTCGGCCAGCCCGC
CCGTGGCCAACGGCGCCTCGCGGGAGCAGTACGGCGGCGGCCTGGCGGCGAGGGAGCAGTACGGAGCGCTGCCGCGGCC
GCTCAACGGCTCCTACCCGGCGCCCTACGCCTCCTACGTGGGGCCGCAGCTCGGCCCCGCCTGGCCCGCGGCGCCCTTC
GAGAACTCCGTGCTGCACTGCCTGCAGGGCCGCGCCGCGCCCATCCCCGTGCGGGCTCCGAGCGCAGAGCTGCTGGAAG
ACCTCTCCGAGAGCCGCGAGTGCGTCAACTGCGGCTCCATCCAGACCCCGCTGTGGAGGAGGGACGGCACCGGGAATTA
CCTGTGCAACGCCTGCGGGCTCTACACCAAAATGAACGGCCTGAGCCGGCCCCTCATCAAACCCCAGAAGAGAGTGCCC
TCGTCACGGCGGCTCGGCCTGTCCTGTGCCAACTGCCACACCACCACCACCACCCTCTGGCGCCGGAACGCCGAGGGTG
AGCCCGTCTGCAACGCCTGCGGCCTCTACATGAAGCTTCATGGGGTTCCCCGACCACTTGCTATGAAAAAAGAAGGAAT
TCAGACGAGGAAACGAAAACCTAAGAACATCAATAAGTCGAAGGCATGCTCTGGTAACAACACTACTGCAGTTCCTATG
ACTCCAACATCTACGTCTTCTACTAACTCAGATGACTGTAGCAAAAACGCCTCCCCAAGCACGCAGCCGGCAGCCTCGG
GGGCGAGCTCGTCAGTGATGTCCGGCCCAGGAGAGAGCACCAGTCCCGAAAGCAGCAACCTTAAGTATTCAGGTCAAGA
TGGGCTGTACACAGGAGTCAGCCTGACCTCCACGGCCGAGGTGACGGCGTCCGTCAGGCAGGATCACTGGTGTGCCCTG
GCTCTGGCGTGACCCACTGCCAGCCAAGCTGGATCCCGGCACTGTGCAGCAGCCCCCAGACGTCCATGCGGGGTTTCTT
CTGTGGAGCGGTGGCAGTGAGAGTGCTGGCTAGGGACGCTCCTCTGAAATTGTTTCCGTGCCTTGGTGGCAGAGGCGGC
TTTCAGTCCCCCTAAGAGGCTCTGCCAAAGCATCCTGATCCTCATCTATGCAAGAAAACTGTAGAGAAAGCAAGTGCCC
ACCGGGGGGTAGCTAATGCAGCCATACACACTCAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAGGAAAATGGG
AAAAAAAAAGACAAAAAAAGAAGATAGAAACCTAGACCTATTGATAGATTCCAGAAACACATCCTCAACTCACCCAGCA
GCGCTGCCTTTCTGATTGTATATTTGTTTTCACTCTCTCATCGCCTTCTCCTCCCAGGAATTTGACGGACGCCGTCAGC
GCTGGGGAGGCTTGAATTATTAGAGATAACCAGATACTTTCTCAAGTGTTGGTAGCGTGTACTGCTGGAGTCAGCGTGG
GCGCCCAGAGCCGGACATTTGACCTCTTCACCCATCCTGTGCCCGCCTTGCTCTGCTCCCTTGTGCCAGAGCCCAGCGA
TGCCCGGGGAGGAGATCACAGCCTTTGGTACAAACCTCACGGGGTCGAGCTGGTGAAGGAGGTTTTGTTGTTGTTTAAG
ATATTTACTCACTTTGCAAGACTGCGCTATAACTTTTGAAGTACACTGTGACTGAGGTTTATGAAAGTTCACGTTTTGT
GGCTGAACTGTGTAGAGTCAGTCGAAATTTGTAAACAGGGTAGCAATCAGATATTTTTTTCTTCCATATATACAATAAT
TTTTTTTTTTTTTAAAAAGAAGTGCAATTTGCGTTGCAGCAATCAGTGTTAAATCATTTGCATAAGATTTAACAACGGT
TTTTATACGAATGAATGAATGTAAACATTTTAACTTAATGGTACGTAAATAATTTAAAAGAAAAACTTAACTAGGCATC
CTTAGGCTTCGTAGTGCAACAAAACCCATCCACTTTCTGCATTTCCAGTTGCTAAAGCGGGAGTCTCAAAGAACAAGCC
TTCTCTCAGGAAAATTGCCCTAGCTGTTTGCTCCTCAGTTTTGTACAAAAAAAGCAAATGCATCCCCAGGTTGGTTATT
ATTATTATTATTATTTTTTTTTTTTTGCCATTTGAAGAAGTATGTACTGGAAAGAAACAAATCGCAATGAAACTTTACT
ACCTAACCGATACATATGTAAATACTCCATAAGATATTTAGGCATCTTTGAAGTTGAGGATGCGATCTGTATAGTGTGA
CTGACACATCGTTAGGTTGGTTTCCATTGTTTTTTAAATGGGATGGCATTTGGGAGGCTGTTTCATCAGAGCTCTACAA
ATAAAAGGGTATCATTTTTTTTTTCTGTACGCCGTGCCTTCTCCTTTGTTTCGGCCACAGCAGTTAATCTGTATTAAAA
GCTACGGATGCAGGCAGCTTGTCTGATGGCTTCAACGTTGTTCTTAAGTCAGAATGTCCGCTCTGCCTCGCTAAGTCTG
TACCACGAGGGGCATTTTTCAAGCTCCCTTCTGTATGCCTCCTAGCGGTATGTACAACTGCGCCTCCCATCATGGGCGT
CTTTTGTGCACACAAGTTGTATTTCTGCTTAAACGCCTTGTGAGGACCACCACATTTTGCTTGGCAGTGGCTAATGTGT
GGAAGGCAGGTCTCCTGTGCACGTCAAAATCAGCAAACGGTGAGGCAGAGCCCTTGCCTGTCTGCTGGCATCCTCTGGT
GGCGAAGTCTGAAGGGCACCCACAGCTGAAGGCGCTGAAAAAGGGAAGATGTCGGTTTATAGCTGCTGAGGGGAATAGA
AAGCTTCTGGCTGGCTTTGAGGACCAGTCCTCTGCATTGCTTTGCTGCTGGGAGCAAGACTTTATGCTCTGTTTTCCAG
CTACGCTGACAGTGCTGCTGGACAGGGATGCTGACTGCCATCACCCCGTGGGTGGCTGCAAAGCATCTCTTCACCTTCC
TCAGAATGAGATCCATTTGGGGTGAAGTGGGACAGCTCTTCTGCTTGCGGTGAAGCTATGCTGCTGTGCACCGGCTGAG
ACCCTGCCTGCTTGTTTTTCAGACTGTAAAGCCCAGAGGGCTGAGGCTGCCTCTGTAATCCCAGGGCTGATGTGAGGAC
CAAGGGATGGACACAGTGGCACAGGCCTCAGAGAGCAGCTTCTAGCAAACAGAGTCCAACAGCCTCTCTTGGGGTTTGA
TCTGTTCCAGACCTGCTCAGCAGACCCAAGGAGGCTGTCATGGTGCTGGACCACTTCAGTTCATTGCGCCCTGTGGGTT
AACGTGGTGGTGCAGCCCAGCCCTGCTGACCTGGGGGACCATGTGGGCCGGGATCGCCTAACTTAATAGATGTTTAGCC
CCATTCAACTGGAAAGTGGGCCACGCAAGGAAACACTGGGTTTAAAATGCAGAGGATGTGCAAAAGAGGATGAATCTCT
TTCCTTTTGAAGCATTTGTTGGCTGAAATGCCCTTTTCTGTGATTTTCTAGTGCTGACACTAACAGGTGCTGAGCAGCC
TTCAGACTTAGCTGGAGTCTTGCATCTTTTTTGGGTTTTTTTTTTGTGTGTGTGGTTTTTTTTTTTTTTTTTGACAGGA
ATGAAGTTTGGTGTGCTACTTCTGAATAGTGTAATACAAGCCTCACTGCTGGGCAGGAGGAGAGGGCCGTGTAGGTCAG
AACTACGTCCCTTGGAGTTATCCTGAAACGGGGAGTTCAGACCAGTACATACTAATTTGGAGCTGCTGACCCAGCAGTA
AACTCAGCTGGCTGCTGACACTCTTGCCAGCAGCCTATGGATGTCGTGTAGCTTTGAAACCCTGTGGCATCATTTAAGA
AGGCTCCCAGGAAGCTCTTCTGCCTTCTCAGTACCACCTTTACCCAGGGTGTGACTTAGGATGGTTCTTAGAGATAGTA
AGTCTTGCAAGGTACAAAAAGATGTGAAAAGAGTTCTCTCGGATCTGAGGCTGAAAGCCTTCCCCATAGGGAAGGTTTT
TCCTGTTTTTATCAGCAAGATCATCAAGAATTAAATACTCTGCCTCCTTGGACCAGAGTCAGGTTTCCATCCCTCTGCA
GTAGGTAGGAGTGATGCAGTACCACGTTGCCTTATTCTATAGATGCTGAGGAGCTCAAAGCCAGGTTCTGTTATGGTTT
TACATGGAAAAAATCTAAGAATTCTATCAGAGCTCTACAAGAGTACCTTCCTACTCACCAAAACCAATCTCCAAATGTA
CATACAGCTGAAGCTGCTTGACAAAATAAAGGTTTGTCTTTTCAAAAAATCGTTATTAATATATTATTTTTTTAATTTT
GCTTTTCAGTGCCAACAAGCCGGCCCAGCTCTGGGTGTGTGAGCTGGATTTTGCTTTGGCTCATACATCATCAATAGCA
CTGATACTGATAGATGGCCCGACCAGATGCTTTCCTTACATATCCCTGTTTTTCTTCAGTGACAGCCCCTGGGATGGGC
TGGGAAAGAACAAAGAGAGTTCGGCTGCAAGCCTCAATTACTAATGAGACTGAACAAGCCAAACTGACCACAGAGCAGC
TCTCTAGTGCCAGGATGAAGCCTCAGAGTTGACACTCTGAGCAAAACAAAACAAAACAAAAAGCATACAGTTATATGTT
ACGATAGCATCTTTCCCCCCTAGAAACAACCAAAGTTAAATGGCCAATGACTTGAGGCATCTTCTTTGGACTCACACCA
AATAACACTGTGGCACTGATAGCATATACTGAGATGTGTGCTGTGGAGTTATATGAGTTTGAAACAACTGCTGGGCTTG
CTTTGGTGAACTGGATGAAGCACAGACAAGCAGGCCTTGTGGCGACTTGGAGGTGTTTTGTTACTTGTGAGCAATCAGA
GGACAAGGACCTGGTGTGAAGTGAGGAGCTAAAGCAGCTGCTTTGGTTTGGTTTTCTTGCTGCAAAACTAGGTAGAGCC
ATGTGTCAGTCCTGCAATATTTGCTATATAGAACTTGGGTAATTCACTGTTCTGCATAAAAATAATACCAATTCTCATT
CTTTCCAAGAGAACATGAGCTTTATGAGTTAAACCCAAAATGGACTCCAGCTCCTCCTGAGTGCTTGCAGCTCCAGATC
TTCCTTTTCCAGCTGTCCTGAACTCCATTCCTCACAGATCCTTCACTTCCTAAATTTGTATACATTGGAGATTCCAGGG
TTGTGTCAAACATACTGAAATCAATATTAAAATATAGGGCAAGGGTTATTGCAGTGGGCCACGGGAGAAAGAAACTGAG
TTCTCGAAGGGCAATTCCAAGAGGCCTCTGCCCCACATGTTGCAAAAGGCTTTGTGGTCTTTGTTACATGTGTGTAATG
TGTTTTTAAAACACTTCGTACCTTCTTTCCTTAAAGATATCCAATGAAATTTGCTACAATAGGTAGGAGAGGGGTGGAG
AATTCAAGTGCCCTGGTGGGTGTGCAGCCAAACAGGAGCTGTCAAAACAATGCACTATGCAAAAGTGCTAATACATTCC
CTGACATAGACTGGGAAATACTGAGTAGAGGTAAGGAGGTAATTTGGGATGCTGCATTTGGAGCTGGCATCCATATTTG
AAAAGGATGTTGAAATTTGGAGAGCGTAGGGGGAAAGAGCCACAGAACTGATTTAAGAACTGGAGAAATTGTCTGTCCT
TGACAAATTTCATGACCACAGTCTGCTGAAAGTATCCAAAAGACTGAAAGGTGACTGGTCTAGTGAGTCCCTTCCTGGG
AAGGAAAATCTTGGTACTGAAAGGGCTTTGATCGTGCAGAGGAAAACAGTGGTCTTCCTCTGGTGGTCGGAAGGTGAAG
CCACATAAGTTCAGGTGAGAAACTAGCCTCAGCTGAAACAATGAATGTAATTAGTGATGGAATGATGGCAAGAGAAGAA
AACAAGTGCTCTATCTCCTGACTTCTTTGCAACAAAATTGTCTGAATGACTGAATTTAGCTGAGCAGAAGTGACTGAGC
TCAGGACTGAGTAGGTTACATTTGCCGCTGTGTGATTTATAGGCCAGATTAGTTCCCATTTGGCCCGAAGCTGTATTAT
TTTTTGGGATGAGACCCAATGCTGAGAGCTTGAATTTTTGTCATTATGAAAAACCCTATGGCACTTTTCCTGTGAGTGG
TGGTAAACACTGTGGTGTCTTGACCCACTTTCAGTGTAAGTAATTACTTTTTGCCTACATAAAACATCCTCCTTCCTCT
CCAAAACTGCCCTGCATCTTTATTGTTTCCTATTAAATGCATCCTAAGTTTCACAGAAGAAAAGATTGTGTTTTGAATA
TATGCAAATAGGATCTGAAAATACTCTATGGTCTAACACACAGGCAGGTCTAACACACATTTCCAGAGCAGTGGCATGG
AGAAGTGCCAGCAAGGCCTGGACAGGCACAGCTCCCAGCACTGACTGCACCAGGGCTGGGTCTGCCTCGGGTTTACATG
GTTTGGAAACTCCATTCTTCACAGAATAAGTTGTGTCGCAAAGTTGATTTTATTTTATTTTAAACCATAAGGAACATTT
CACGAAGCCTGGAACAGGCTTCTGAAGACAGCAATAGTCACAGAATCATAGAATCATTTGAGTTGGAAGGGGCCCTTAA
AGGTCATCTGGTCCAACCCCCCTGCAATGAACAAAGACACCTAGAGCTCAATCAGGTTGCTCAGAGCCTTGTCCGGCTT
GATCTTGAGTGTCTGCAGGGATGGGTCATCCACCACCTCTCTGGGCAACCTGCTCCTGTGCCTCACCACCCTCATTTTA
TTTTATTTTAGTTTTTCCCTTATATCCAGTCTAAATATCTCCTCTTTTAGTTGGAAACCATTTCCCCTTGTCCTATCCT
TCCTTATAACGCAGTGATGTCCTGTCGTTTCCAGAAACTTTGACTTGCCTTTTATCAATTAAAGGTTAGAACCCTGA
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205420).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Opaca
Kohler's Sickle
Koller's sickle / posterior area opaca
1-3
stage 3
Germ Cells/PGCs
Germinal Crescent
Mesoderm
Primitive Streak
primitive streak / germinal crescent / germ wall margin / posterior mesoderm
4-6
stage 6
Germ Cells/PGCs
Germinal Crescent
Headfold
head fold / germinal crescent / germ wall margin
7-9
stage 9
Blood Vessels
Germ Cells/PGCs
Heart
Somites
heart mesoderm and prospective great vessels / germ wall margin / weak in somites
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2061

Mouse

EmageMGI:107516
EurexpressMGI:107516
MGI GXDMGI:107516

Frog

Xenbase485062

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-000622-1
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