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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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NTN1
netrin 1

Gene

Official Symbol	NTN1
Official Full Name	netrin 1
CGNC ID	49784
also known as	netrin-1, netrin-1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205419
Polypeptide	NP_990750
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.794

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function	protein binding
Biological Process	anterior/posterior axon guidance, cell-cell adhesion, establishment of nucleus localization, more...
Cellular Component	basement membrane, cell periphery, cytoplasm

Links to other databases

Entrez Gene	396389
Ensembl Gene	ENSGALG00000023626
KEGG	gga:396389

Entry 1

GEISHA Id	Netrin1.Guan.2003	Data Source	Publication
Complete cDNA Template Probe	show CGCTTCAACATGGAGCTGTACAAGCTGTCGGGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCG GGCGGCACTGCCACTACTGCAAGGAAGGCTTCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGA GTGCGATTGCCATCCCGTGGGCGCCGCCGGCCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTC ACCGGCATCACCTGCAACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCG CCGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAA GCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCC GACTGGTGGAAGTTCACCGTCAACATCATCTCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCC TGTGGGTGCACGCCAAGGACATCGCCTGCAAGTGCCCCAAGGTGAAGCCCATGAAGAA
Citation	Guan W, Condic ML. Characterization of Netrin-1, Neogenin and cUNC-5H3 expression during chick dorsal root ganglia development. Gene Expr Patterns. 2003 Jun;3(3):369-73.
Copyright	Reprinted from Developmental Biology, Volume 3, Issue 3, Wel Guan, and Maureen L. Condic, Characterization of Netrin-1, Neogenin and cUNC-5H3 expression during chick dorsal root ganglia development, Pages 369-373, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	The authors said: Netrin-1: bp 12351845 of L34549.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

Dermatome
Myotome
Spinal Cord

Floor plate

25-30

stage 30

Dermatome
Myotome
Spinal Cord
Spinal Ganglia and Nerves

Floor plate, DRG

Entry 2

GEISHA Id	Netrin1.Wilson.2006	Data Source	Publication
Complete cDNA Template Probe	show GGCACGAGGGACCCAGCCCCGCCGCCAGCCGACTTTTGTGGGGCCGTCGCCTCTCCGCTCTCCCTTTCTCCGCGGGGTT TGGCCGCGGGGCGGGCGATGCTCCGCGCTCCGTGAGCCGCGCACCGCACCGCCTCCGCCGGCCGAGCGCCCCGCTCAGA GCCCCGCTGCGCCGCGCACGATGCCGCGGAGGGGCGCGGAGGGGCCGCTCGCCCTGCTGCTGGCGGCCGCGTGGCTGGC ACAGCCGCTGCGAGGCGGCTACCCCGGGCTGAACATGTTCGCCGTGCAGACGGCGCAGCCCGACCCCTGCTACGACGAG CACGGGCTGCCCCGCCGCTGCATCCCGGACTTCGTCAACTCGGCCTTCGGCAAGGAGGTGAAGGTGTCGAGCACCTGCG GGAAGCCGCCGTCGAGGTACTGCGTGGTGACGGAGAAGGGCGAGGAGCAGGTCCGCTCGTGCCACCTCTGCAACGCCTC CGACCCCAAGCGCGCCCACCCGCCCTCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAC AGCTACGTGCAGTACCCGCACAACGTCACCCTCACGCTGTCCCTCGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGC AGTTCTGCTCGCCGCGCCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGCAAGACGTGGGTGCCCTTCCAGTT CTACTCCACGCAGTGCCGCAAGATGTACAACAAGCCGAGCCGCGCCGCCATCACCAAGCAGAACGAGCAGGAGGCCATC TGCACCGACTCGCACACCGACGTGCGGCCCCTCTCCGGCGGCCTCATCGCCTTCAGCACCCTGGACGGCCGCCCCACCG CCCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTGACGGCCACCGACATCAAGGTGACCTTCAGCCGCCTGCA CACCTTCGGCGACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTC GGCGGGCGCTGCAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGC ACAACACGGCCGGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGA GGCCAACGAGTGCGTGGCCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCG GGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAAGGCT TCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCCGTGGGCGCCGCCGG CCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGCGCCAAG GGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCACAGCTGCCAGCAGCA CGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAA GAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCACCGTCAACATCATC TCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAAGGACATCGCCTGCA AGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGACCAGAGCGGCATCAT CGCGGACAAGAGCAGCCTGGTGATCCAATGGCGGGACACGTGGGCACGGCGGCTGCGGAAGTTCCAGCAGAGGGAGAAG AAGGGGAAGTGTAGGAAGGCGTAGGGAGGAGCGGTGATGGACTGAGCGCTGCCGGGTGCGGGCGGGGGGTGGGCGCAGG GGGCTCACGGCATCTCGTATTGAGGGATGGAAGGGGAAAAAAAACACGAAACC
Citation	Wilson LJ, Wingate RJ (2006). Temporal identity transition in the avian cerebellar rhombic lip. Dev Biol. 2006 Sep 15;297(2):508-21. Epub 2006 May 26.
Copyright	Copyright © 2006 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_205419).

Stage

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7-10

stage 10

Head Process
Neural Plate/Tube
Notochord
Somites

Floor plate

Entry 3

GEISHA Id	Netrin1.Riley.2010	Data Source	Publication
Complete cDNA Template Probe	show GGCACGAGGGACCCAGCCCCGCCGCCAGCCGACTTTTGTGGGGCCGTCGCCTCTCCGCTCTCCCTTTCTCCGCGGGGTT TGGCCGCGGGGCGGGCGATGCTCCGCGCTCCGTGAGCCGCGCACCGCACCGCCTCCGCCGGCCGAGCGCCCCGCTCAGA GCCCCGCTGCGCCGCGCACGATGCCGCGGAGGGGCGCGGAGGGGCCGCTCGCCCTGCTGCTGGCGGCCGCGTGGCTGGC ACAGCCGCTGCGAGGCGGCTACCCCGGGCTGAACATGTTCGCCGTGCAGACGGCGCAGCCCGACCCCTGCTACGACGAG CACGGGCTGCCCCGCCGCTGCATCCCGGACTTCGTCAACTCGGCCTTCGGCAAGGAGGTGAAGGTGTCGAGCACCTGCG GGAAGCCGCCGTCGAGGTACTGCGTGGTGACGGAGAAGGGCGAGGAGCAGGTCCGCTCGTGCCACCTCTGCAACGCCTC CGACCCCAAGCGCGCCCACCCGCCCTCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAC AGCTACGTGCAGTACCCGCACAACGTCACCCTCACGCTGTCCCTCGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGC AGTTCTGCTCGCCGCGCCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGCAAGACGTGGGTGCCCTTCCAGTT CTACTCCACGCAGTGCCGCAAGATGTACAACAAGCCGAGCCGCGCCGCCATCACCAAGCAGAACGAGCAGGAGGCCATC TGCACCGACTCGCACACCGACGTGCGGCCCCTCTCCGGCGGCCTCATCGCCTTCAGCACCCTGGACGGCCGCCCCACCG CCCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTGACGGCCACCGACATCAAGGTGACCTTCAGCCGCCTGCA CACCTTCGGCGACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTC GGCGGGCGCTGCAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGC ACAACACGGCCGGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGA GGCCAACGAGTGCGTGGCCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCG GGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAAGGCT TCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCCGTGGGCGCCGCCGG CCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGCGCCAAG GGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCACAGCTGCCAGCAGCA CGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAA GAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCACCGTCAACATCATC TCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAAGGACATCGCCTGCA AGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGACCAGAGCGGCATCAT CGCGGACAAGAGCAGCCTGGTGATCCAATGGCGGGACACGTGGGCACGGCGGCTGCGGAAGTTCCAGCAGAGGGAGAAG AAGGGGAAGTGTAGGAAGGCGTAGGGAGGAGCGGTGATGGACTGAGCGCTGCCGGGTGCGGGCGGGGGGTGGGCGCAGG GGGCTCACGGCATCTCGTATTGAGGGATGGAAGGGGAAAAAAAACACGAAACC
Citation	Riley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205419).

Stage

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Location (click to highlight)

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13-18

stage 14

stage 17

Hindbrain
Isthmus/MHB
Midbrain

19-20

stage 20

Hindbrain
Isthmus/MHB
Midbrain

Entry 4

GEISHA Id	NETRIN1.Abraira.2010	Data Source	Publication
Complete cDNA Template Probe	show GGCACGAGGGACCCAGCCCCGCCGCCAGCCGACTTTTGTGGGGCCGTCGCCTCTCCGCTCTCCCTTTCTCCGCGGGGTT TGGCCGCGGGGCGGGCGATGCTCCGCGCTCCGTGAGCCGCGCACCGCACCGCCTCCGCCGGCCGAGCGCCCCGCTCAGA GCCCCGCTGCGCCGCGCACGATGCCGCGGAGGGGCGCGGAGGGGCCGCTCGCCCTGCTGCTGGCGGCCGCGTGGCTGGC ACAGCCGCTGCGAGGCGGCTACCCCGGGCTGAACATGTTCGCCGTGCAGACGGCGCAGCCCGACCCCTGCTACGACGAG CACGGGCTGCCCCGCCGCTGCATCCCGGACTTCGTCAACTCGGCCTTCGGCAAGGAGGTGAAGGTGTCGAGCACCTGCG GGAAGCCGCCGTCGAGGTACTGCGTGGTGACGGAGAAGGGCGAGGAGCAGGTCCGCTCGTGCCACCTCTGCAACGCCTC CGACCCCAAGCGCGCCCACCCGCCCTCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAC AGCTACGTGCAGTACCCGCACAACGTCACCCTCACGCTGTCCCTCGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGC AGTTCTGCTCGCCGCGCCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGCAAGACGTGGGTGCCCTTCCAGTT CTACTCCACGCAGTGCCGCAAGATGTACAACAAGCCGAGCCGCGCCGCCATCACCAAGCAGAACGAGCAGGAGGCCATC TGCACCGACTCGCACACCGACGTGCGGCCCCTCTCCGGCGGCCTCATCGCCTTCAGCACCCTGGACGGCCGCCCCACCG CCCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTGACGGCCACCGACATCAAGGTGACCTTCAGCCGCCTGCA CACCTTCGGCGACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTC GGCGGGCGCTGCAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGC ACAACACGGCCGGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGA GGCCAACGAGTGCGTGGCCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCG GGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAAGGCT TCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCCGTGGGCGCCGCCGG CCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGCGCCAAG GGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCACAGCTGCCAGCAGCA CGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAA GAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCACCGTCAACATCATC TCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAAGGACATCGCCTGCA AGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGACCAGAGCGGCATCAT CGCGGACAAGAGCAGCCTGGTGATCCAATGGCGGGACACGTGGGCACGGCGGCTGCGGAAGTTCCAGCAGAGGGAGAAG AAGGGGAAGTGTAGGAAGGCGTAGGGAGGAGCGGTGATGGACTGAGCGCTGCCGGGTGCGGGCGGGGGGTGGGCGCAGG GGGCTCACGGCATCTCGTATTGAGGGATGGAAGGGGAAAAAAAACACGAAACC
Citation	Abraira VE, Satoh T, Fekete DM, Goodrich LV. Vertebrate Lrig3-ErbB interactions occur in vitro but are unlikely to play a role in Lrig3-dependent inner ear morphogenesis. Dev Biol. 2010 Apr 15;340(2):595-604. Epub 2010 Feb 18.
Copyright	Copyright Abraira et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205419.1 ).

Stage

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Location (click to highlight)

Comments (click to highlight)

25-29

stage 27

stage 29

Ear/Otic Placode

Entry 5

GEISHA Id	NETRIN1.Murakami.2010	Data Source	Publication
Complete cDNA Template Probe	show ACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTCGGCGGGCGCTG CAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGCACAACACGGCC GGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGAGGCCAACGAGT GCGTGGCCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCGGGCAGAAAGAG CGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAAGGCTTCTACCGCGAC CTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCCGTGGGCGCCGCCGGCCAAACCTGCA ACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGCGCCAAGGGCTACCAGCA GAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCT GCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTACG CTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCACCGT
Citation	Murakami S, Ohki-Hamazaki H, Watanabe K, Ikenaka K, Ono K., Netrin 1 provides a chemoattractive cue for the ventral migration of GnRH neurons in the chick forebrain. J Comp Neurol. 2010 Jun 1;518(11):2019-34.
Copyright	Copyright © 2010 Wiley-Liss, Inc.
Comments	Authors indicated probe was GenBank access. no. L34549, nt959-1728

Stage

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Location (click to highlight)

Comments (click to highlight)

31-32

stage 32

Telencephalon

Entry 6

GEISHA Id	NTN1.Hardy.2019	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTGCAAGGAAGGCTTCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCC GTGGGCGCCGCCGGCCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCA ACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCAC AGCTGCCAGCAGCACGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATG AAGAAGTACTGCAAGAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCA CCGTCAACATCATCTCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAA GGACATCGCCTGCAAGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGAC CAGAGCGGCATCATCGCGGACAAGAGCAGCCTGGTG
Citation	Holly Hardy, James Gd Prendergast, Aara Patel, Sunit Dutta, Violeta Trejo-Reveles, Hannah Kroeger, Andrea R Yung, Lisa V Goodrich, Brian Brooks, Jane C Sowden, Joe Rainger. Detailed analysis of chick optic fissure closure reveals Netrin-1 as an essential mediator of epithelial fusion. Elife. 2019 Jun 4;8:e43877. DOI: 10.7554/eLife.43877.
Copyright	Copyright © 2019, Hardy et al.
Comments	Authors indicated that the probe was amplified by PCR using the following primers: 5’-ATTAACCCTCACTAAAGGCTGCAAGGAGGGCTTCTACC-3’ and 5’-TAATACGACTCACTATAGGCACCAGGCTGCTCTTGTCC-3’. The probe sequence above was extracted from NCBI (accession number NM_205419.1).