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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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EOMES
eomesodermin

Gene

Official Symbol	EOMES
Official Full Name	eomesodermin
CGNC ID	8681
also known as	eomesodermin homolog
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI

Sequence Information

Genomic
RNA	XM_426003
Polypeptide	XP_426003

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	8320	ENSG00000163508		MIM:604615
Mouse	13813	ENSMUSG00000032446	All phenotypic alleles (10):Targeted, knock-out(3) Targeted, other(7)	MGI:1201683
Xenopus	100038065, 398065			479768
Zebrafish	64603, 799447	ENSDARG00000006640, ENSDARG00000019428	ZDB-GENE-001228-1, ZDB-GENE-070318-1	ZFIN:ZDB-GENE-001228-1, ZFIN:ZDB-GENE-070318-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428443
Ensembl Gene
KEGG	gga:428443

Entry 1

GEISHA Id	ChEST194g13	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TCCATAGGGCGATGGAGCTCCCCGCGGTGGCGGCCGCGGCTCGAGCGAGCAATGAAAATCCNTTANACATGAAATGTGA GGACATTAATGCTGAGGACTATACCAAAGACACTTCAAAAGGCATGGGCTACTATGCGTTCTATACCAGTTCTTAAAGC ATCCTTTTGTTCCAATTGGCTATTTTTTTTCAGGGTGGCCTTTGTTTTCTTTCTTTTGCATTACGATTGCCAAAAAGAC TCTTGCCTTCCACCTTAAATTGTCATGTGCAATTCTAAAGAAGGTGCCAAAGCTTTTTGACTGTTGCAGGTAATTAAGT AGGAAAAGCAAATCATGATACAACTTTTCTTAGAAACAGGATGTGGAAAAGCTGTAAGCAGGAGCCTAGATTTCTACAA GGTGGTTTATTTATTGGAGACACTGAAGTGTACAGTTTGGCTTGGCCCAGAGGCCTGATCAAATCTGTACACTGAGTGA GGAAATAGCAGTTGGATTCCAAATTTTACTTTCTTCCCTGCCTTGCCCCTCTGGTAAAGGGCACCGGGGTGGGGGGCTG CACATTCTGTTTTAAACAGAACTGTTTTCTTCAACACTTGTTCACAGAGCAGTTGGCTGAGTTAGGCATTGCTCAGCTA AGGCTTTCTTTGGTAGAAGGTGGTTAAAATAAGGCCTGCTCCAGGCAGGAATTTAACTTGAAGGTCTTGCTGCTAGTGA TGCCTTTACAATGGCCAAATCTGACTTTTAAGGAAAACATGCCTCCATCCCAAAAGCCTAACCCTTATTGAGGTGGCAA AAAAATCCAAGTGTACAGTTGTGTTTTGTCTAGGTACACTGTAGAACATTGTGAAATAATATATAAATAGTTGACCTAT AGCTGTTCAGTCAGAAGGACCTCCGGTGGTGCTTTGAAGTTCAAAATGCATTTTCTTTTTTGGGTTAAACTTAGCATAT GGAGCATTGCAAAGAGCATTAGCAGATTTCTATTTGCGTGTATGTAAAGTGACTTTCAGCTGCCCTGTATCAAACTGGA AGTGATGTAACCTGCCCACTCTTCTTGCCTATAGTTTCAGCCATTTTAAACGGATCAACCCTAGAGCACTGGCACACAC AATTCTCCTGGTGAAANCTTGGTTCCGCTTTTATATGTACATAGTAGTAATTTTTAATNNTTAAAAGGGTGCCTTGCAA AAAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Epiblast
Hensen's Node
Primitive Streak

4-6

stage 4

stage 5

stage 6

Epiblast
Headfold
Neural Plate/Tube
Notochord
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

stage 12

Anterior Neuropore
Forebrain
Headfold
Hindbrain
Midbrain
Neural Plate/Tube
Notochord

Low level expression.
Low level expression.

13-18

stage 13

stage 17

Forebrain
Hindbrain
Midbrain
Notochord

19-24

stage 22

stage 23

stage 24

Cranial Ganglia
Telencephalon

stage 25

Telencephalon

Entry 2

GEISHA Id	EOMES.Pernaute.2010	Data Source	Publication
Complete cDNA Template Probe	show TGACTGAAGATGGCGTTGAGGATCTGAATGATTCTTCAAAGACTCAAACGTTTATTTTCCCCGAAACGCAGTTCATAGC AGTTACAGCCTATCAAAACACCGATATTACTCAGCTCAAAATTGATCACAATCCTTTTGCAAAGGGCTTCAGAGACAAC TATGACTCATCCCACCAGATTGTCCCTGGTGCCCGATACAGCGTGCAACCGTTCTTCCAAGAACAGTTTGTCAACAACC TGCCCCCCACCAGATTTTACAACGGTGAGAGAACCGTCCCGCAGACCAACGGCTTGCTGTCCCCACAGCAGAGCGAAGA GGTGGCCAGCCCTCCCCAGCGGTGGTTCGTTACTCCCGTGCAGCAGCCCAGTGCCAACAAACTGGACATGAACTCCTAT GAGACGGAGTACTCTCCTAGCACCTTGCTCCCCTACGGCATTAAATCCCTCCCTCTTCAGACATCCCATGCCCTGGGGT ACTACCCTGACCCAACGTTTCCATCCATGGCGGGCTGGGGGAGTAGGGGCTCCTACCAGAGAAAAATGACCACAGGATT ACCTTGGAGCTCCAGGACAAGTCCTCCAGGCTTCTCTGAAG
Citation	Pernaute B, Cañon S, Crespo M, Fernandez-Tresguerres B, Rayon T, Manzanares M. Comparison of extraembryonic expression of Eomes and Cdx2 in pregastrulation chick and mouse embryo unveils regulatory changes along evolution. Dev Dyn. 2010 Feb;239(2):620-9. doi: 10.1002/dvdy.22176.
Copyright	Copyright © 2009 Wiley-Liss, Inc.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in the paper.

Stage

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Location (click to highlight)

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X-XIV

stage X

stage XII

stage XIV

Area Opaca
Hypoblast
Kohler's Sickle

1-3

stage 1

stage 2

Area Opaca
Primitive Streak

4-6

stage 4

stage 5

Epiblast
Germ Cells/PGCs
Headfold
Hensen's Node
Primitive Streak

19-22

stage 19

stage 22

Forebrain
Germ Cells/PGCs

Entry 3

GEISHA Id	EOMES.Han.2018	Data Source	Publication
Complete cDNA Template Probe	show TGACTGAAGATGGCGTTGAGGATCTGAATGATTCTTCAAAGACTCAAACGTTTATTTTCCCCGAAACGCAGTTCATAGC AGTTACAGCCTATCAAAACACCGATATTACTCAGCTCAAAATTGATCACAATCCTTTTGCAAAGGGCTTCAGAGACAAC TATGACTCCATGTACACAGCTTCAGAAAATGACAGATTAACTCCATCTCCCACGGATTCTCCTAGATCCCACCAGATTG TCCCTGGTGCCCGATACAGCGTGCAACCGTTCTTCCAAGAACAGTTTGTCAACAACCTGCCCCCCACCAGATTTTACAA CGGTGAGAGAACCGTCCCGCAGACCAACGGCTTGCTGTCCCCACAGCAGAGCGAAGAGGTGGCCAGCCCTCCCCAGCGG TGGTTCGTTACTCCTGTGCAGCAGCCCAGTGCCAACAAACTGGACATGAACTCCTATGAGACGGAGTACTCTCCTAGCA CCTTGCTCCCCTACGGCATTAAATCCCTCCCTCTTCAGACATCCCATGCCCTGGGGTACTACCCTGACCCTACGTTTCC ATCCATGGCGGGCTGGGGGAGTAGGGGCTCCTACCAGAGAAAAATGACAACAGGATTACCTTGGAGCTCCAGGACAAGT CCTCCAGGCTTCTCTGAAG
Citation	Jae Yong Han, Hyo Gun Lee, Young Sun Hwang, Hyung Chul Lee, Sang Kyung Kim, Deivendran Rengaraj. Expression of transcription factors during area pellucida formation in intrauterine chicken embryos. Int J Dev Biol. 2018;62(4-5):341-345. DOI: 10.1387/ijdb.170255jh.
Copyright	Copyright © UPV/EHU Press
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Han et al. 2018.

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida

4-6

stage 5

stage 6

Area Opaca
Area Pellucida
Hypoblast

all

Entry 4

GEISHA Id	EOMES.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCCGCGGGTCGGGGCCGGCACTGGGTACCGCGGGGGTTGTGCGGAGCCGCCGCCGCCCGCCGAGGATGCAGCTGGGAGA GCCTCTGCTGGCGGCGGCGGGGGGGGCCCTGCCGGGAGCCCCCTTTTACCCGCTGGAGGGCGGCGGGCGCGGCAGCGGG ACCGGAGCCGGAGGAGGCGGCGGAGCCGCGTCCCGCGGGCCGCCGCGCCCGGGCTCCCCGGCTCATCTCGACCTGGACA AGGCGGCCAAGAAGTTCGCGGCGGCTCCGGCCATGCTGGGCGAGCCCGACGCGGGGGAGCCGCCCTTCGCCGCCCCGAA GCCGGACGGCCGCAAGACTACCCCCTGCGGGGAGGAAGAGCTGCCTCCGGCCGCCGCCGCGCGGTACTCCATGGACAGC CTGAGCCCCGAGCGCTACTACCTGCAGTCCCCCGGGCCGCCGGTCGCCGAGCTGGGGGGGCCCTGCGCTCTCTTCCCTT ACCCGCCCGCCGCGCAGCACGGCGCCGTGTACCAGGCGCCCGGCGGGCCGCGCTACCCCTACGGCTCCGTGCTGTCCTC GGGCGGCTTCGCGGGCGCCGTGTGCCCGCCCGGCGGCAGGACGCAGTTCGGCGGAGGCGGCGGGTACCAGTACGGGCAG GCGGCGGCCGGCGGAGCCCTCTACGGCCCCTACCCGCCGGCCTCGGGCTCCTGCGGTGGGCTCGGGGCGCTGGGGGTGC CGGCGGCCGGGCCCGGGCTGCGGGCGCAAGTCTTCCTCTGCAACCGGCCGCTCTGGCTCAAGTTCCACCGGCACCAGAC GGAGATGATCATCACCAAGCAGGGCCGGCGGATGTTTCCGTTTCTGAGCTTTAATATTACCGGCCTCAACCCCACCGCC CACTACAACGTCTTCGTGGAGGTGGTGCTGGCGGACCCCAACCACTGGCGCTTCCAAGGGGGAAAATGGGTGACGTGCG GCAAAGCCGACAACAACATGCAGGGCAACAAGGTGTACGTGCACCCTGAGTCGCCCAACACCGGAGCGCACTGGATGCG GCAGGAGATCTCTTTCGGCAAGCTGAAGCTGACCAACAACAAGGGAGCCAACAACAACAACGCGCAGATGATAGTCCTG CAGTCTCTACACAAGTACCAGCCTCGGCTTCACATAGTGGAAGTGACTGAAGATGGCGTTGAGGATCTGAATGATTCTT CAAAGACTCAAACGTTTATTTTCCCCGAAACGCAGTTCATAGCAGTTACAGCCTATCAAAACACCGATATTACTCAGCT CAAAATTGATCACAATCCTTTTGCAAAGGGCTTCAGAGACAACTATGACTCCATGTACACAGCTTCAGAAAATGACAGA TTAACTCCATCTCCCACGGATTCTCCTAGATCCCACCAGATTGTCCCTGGTGCCCGATACAGCGTGCAACCGTTCTTCC AAGAACAGTTTGTCAACAACCTGCCCCCCACCAGATTTTACAACGGTGAGAGAACCGTCCCGCAGACCAACGGCTTGCT GTCCCCACAGCAGAGCGAAGAGGTGGCCAGCCCTCCCCAGCGGTGGTTCGTTACTCCTGTGCAGCAGCCCAGTGCCAAC AAACTGGACATGAACTCCTATGAGACGGAGTACTCTCCTAGCACCTTGCTCCCCTACGGCATTAAATCCCTCCCTCTTC AGACATCCCATGCCCTGGGGTACTACCCTGACCCTACGTTTCCATCCATGGCGGGCTGGGGGAGTAGGGGCTCCTACCA GAGAAAAATGACAACAGGATTACCTTGGAGCTCCAGGACAAGTCCTCCAGGCTTCTCTGAAGATCAGCTTTCCAAGGAG AAGGTGAAAGAAGAAATTGGCTCATCCTGGATAGAGACTCCGCCCTCCATCAAGTCTCTAGATTCCAACGATTCTGGGG TCTACACGGGTGCTTGTAAGAGAAGACGGCTCTCCCCTAGCACTTCGAGCAATGAAAATTCCCCATCCATGAAATGTGA GGACATTAATGCTGAGGACTATAGCAAAGACACTTCAAAAGGCATGGGCTACTATGCGTTCTATACCAGTTCTTAAAGC ATCCTTTTGTTCCAATTGGCTATTTTTTTTTCAGGGTGGCCTTTGTTTTCTTTCTTTTGCATTACGATTGCCAAAAAGA CTCTTGCCTTCCACCTTAAATTGTCATGTGCAATTCTAAAGAAGGTGCCAAAGCTTTTTGACTGTTGCAGGTAATTAAG TAGGAAAAGCAAATCATGATACAACTTTTCTTAGAAACAGGATGTGGAAAAGCTGTAAGCAGGAGCCTAGATTTCTACA AGGTGGTTTATTTATTGGAGACACTGAAGTGTACAGTTTGGCTTGGCCCAGAGGCCTGATCAAATCTGTACACTGAGTG AGGAAATAGCAGTTGGATTCCAAATTTTACTTTCTTCCCTGCCTTGCCCCTCTGGTAAAGGGCACCGGGGTGGGGGGCT GCACATTCTGTTTTAAACAGAACTGTTTTCTTCAACACTTGTTCGCAGAGCAGTTGGCTGAGTTAGGCATTGCTCAGCT AAGGCTTTCTTTGGTAGAAGGTGGTTAAAATAAGGCCTGCTCCAGGCAGGAATTTAACTTGAAGGTCTTGCTGCTAGTG ATGCTTTTACAATGGCCAAATCTGACTTTTAAGGAAAACATGCCTCCATCCCAAAAGCCTAACCCTTATTGAGGTGGCA AAAAAATCCAAGTGTACAGTTGTGTTTTGTCTAGGTACACTGTAGAACATTGTGAAATAATATATAAATAGTTGACCTA TAGCTGTTCAGTCAGAAGGACCTCCGGTGGTGCTTTGAAGTTCAAAATGCATTTTCTTTTTTGGGTTAAACTTAGCATA TGGAGCATTGCAAAGAGCATTAGCAGATTTCTATTTGCGTGTATGTAAAGTGACTTTCAGCTGCCCTGTATCAAACTGG AAGTGATGTAACCTGCCCACTCTTCTTGCCTATAGTTTCAGCCATTTTAAACGGATCAACCCTAGAGCACTGGCACACA CAATTCTCCTGGTGAAACTTGGTTCTGCTTTTATATGTACATAGTAGTAATTTTTAATAAATGTGGTGGTGCCAGGCAT GAGAGTGTGGGTTGCTATCTGCTTCTTTGCCTCTACCAGGCTGGGGGGAGGAGGGAGCACAAACCTGAATGCGCTGCCT TGCTAAGGATTGGGGGGTTGTGATGGCTTTTAAATCCAACCGCGTTTTTGTAAAGTTTCTCCTTGCTCTTTTGTCTCAC ATCGTCCTCATCTGCACGCTGCTAATGGTATTAAT
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( NM_001321555 ).