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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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RAR-GAMMA2
retinoic acid receptor gamma 2 isoform

Gene

Official Symbol	RAR-GAMMA2
Official Full Name	retinoic acid receptor gamma 2 isoform
CGNC ID	49214
also known as
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	X73973
Polypeptide	CAA52153
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.113

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395212
Ensembl Gene
KEGG

Entry 1

GEISHA Id	RARg2.Cui.2003	Data Source	Publication
Complete cDNA Template Probe	show `GAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAACCCAAGAAGCGCGCGCTGCGGCGCCTTTAAGAGCG CCCCCCCCCCCCCATCCCCTCCGCGGCTCCGCCGTGGCGGGGCCGTGCCCGGTTGGGGCCGCAGCCGCCGCGGGGCCGT CCCGCGCCGCGTGGCTGCGGTGGGTGCGCGGGACGATGTACGACTGCGTGGAGGCTCTGGCGGTCCCGCGGCGGCTGCA CGACGTGACCAACCGCGGGGCGTGCGCGCTGCGCAAGGCGGGCTGCGGGCCGCGCTACGGGCCGCGCTGCGGGGCTCTG CCGTGCGCCTGGCCCGGCGCCGCC`
Citation	Cui, J, Michaille, JJ, Jiang, W, Zile, MH. Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. Dev Biol. 2003 Aug 15;260(2):496-511.
Copyright	"Reprinted from Developmental Biology, 260, Cui, J, Michaille, JJ, Jiang, W, Zile, MH, Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. 496-511, Copyright (2003), with permission from Elsevier". Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	Antisense riboprobes were prepared from chicken RARγ2 (nt1340) [Michaille et al 1994]. This sequence is 1-340 of acc # X73973.

Stage

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Comments (click to highlight)

4-6

stage 5

stage 6

Area Pellucida
Headfold

Comparison with several genes
Quail

7-10

stage 7

stage 8

stage 10

Endoderm
Headfold
Neural Crest
Neural Plate/Tube
Splanchnic Mesoderm
Surface Ectoderm

Quail

Entry 2

GEISHA Id	RARGAMMA.Wilson.2007	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAACCCAAGAAGCGCGCGCTGCGGCGCCTTTAAGAGCG CCCCCCCCCCCCCATCCCCTCCGCGGCTCCGCCGTGGCGGGGCCGTGCCCGGTTGGGGCCGCAGCCGCCGCGGGGCCGT CCCGCGCCGCGTGGCTGCGGTGGGTGCGCGGGACGATGTACGACTGCGTGGAGGCTCTGGCGGTCCCGCGGCGGCTGCA CGACGTGACCAACCGCGGGGCGTGCGCGCTGCGCAAGGCGGGCTGCGGGCCGCGCTACGGGCCGCGCTGCGGGGCTCTG CCGTGCGCCTGGCCCGGCGCCGCCCCGCACGGCGCTGAGACGCAGAGCAGCAGCTCGGAGGAGATGGTGCCCAATTCGC CCTCCCCGCCGCCGCCGCCGCGCGTCTACAAACCGTGCTTCGTCTGCAGCGACAAATCCTCGGGGTACCACTACGGCGT CAGCTCCTGCGAGGGCTGCAAGGGTTTCTTCCGCCGCAGCATCCAGAAGAACATGGTGTACACGTGCCACCGCGACAAG AACTGCCAGATCAACAAGGTGACGCGCAACCGCTGCCAGTTCTGCCGCCTGCAGAAGTGCTTCGAGGTCGGCATGTCCA AGGAAGCCGTGCGCAATGACCGCAATAAGAAGAAGAAGGAGGTGAAGGAGGAGGCGGCCGACAGCCCCGAGCTGAGCCC GGCGCTGGAGGAGCTGATCCAGAAGGTCAGCAGGGCGCACCAGGAGACCTTCCCCTCACTGTGCCAGCTGGGCAAATAC ACCATGAGCTCGAGCGCTCAGCACCGCGTGCAGTTGGACCCGGGGCTGTGGGACAAATTCAGCGAGTTGGCCACCAAAT GCATCATCAAGATCGTGGAGTTCGCCAAGCGCCTGCCCGGCTTCACCGCGCTCAGCATCGCCGATCAGATCACGCTGCT CAAAGCCGCCTGCCTGGACATCCTGATGCTGCGGATCTGCACGCGCTACACCCTCGAGCAGGACACCATGACCTTCTCG GACGGGCTGACGCTGAACCGCACGCAGATGCACAACGCCGGCTTCGGGCCGCTCACAGACCTGGTGTTCGCCTTCGCCG GGCAGCTGCTGCCGCTGGAGATGGACGACACCGAAACCGGGCTGCTGAGCGCCATCTGCCTCATCTGCGGGGACCGGCA GGACCTGGAGGAGCCCGAGCAGGTGGAGCGGCTGCAGGAGCCGCTGCTGGAGGCGCTGAGGGTTTACGCGCGGCGGCGG CGGCCGTCGAAGCCCCACATGTTCCCCAGAATGCTGATGAAGATCACCGACCTGCGCGGCATCAGCACCAAAGGCGCTG AGCGTGCCATCACGCTGAAGATGGAGATCCCGGGCCCAATGCCGCCCCTGATCCGGGAGATGCTGGAGAACCCCGAGAT GTTCGAGGAGGAGCCCCCCCCGGACCCCCCCGCAGCCCCCGCCTCGCCCTAGGCCGGGGGAAGCCCCCCCCCCCGCCTC TGCTGCCTTCCGGCCCCCCCGCTGCCGCAGCGCTCTGCTTTTTGGGGGGGCTCCGAGACTGACGGAGCGGGGGGGGGGC GGT
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI X73973.2, which is gamma2 not gamma.