GEISHA - A Chicken Embryo Gene Expression Database
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NTRK1
neurotrophic receptor tyrosine kinase 1

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolNTRK1
Official Full Nameneurotrophic receptor tyrosine kinase 1
CGNC ID49757
also known asCTRKA, trkA, high affinity nerve growth factor receptor|neurotrophic tyrosine kinase, receptor, type 1|trk-A|tropomyosin receptor kinase
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205378
PolypeptideNP_990709
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.579
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human4914ENSG00000198400MIM:256800MIM:191315
Mouse18211ENSMUSG00000028072All phenotypic alleles (12):Targeted, knock-out(3) Targeted, other(9) MGI:97383
Xenopus100489637923000
Zebrafish30546ENSDARG00000004586ZDB-GENE-980526-118ZFIN:ZDB-GENE-980526-118
Gene Ontology
Molecular FunctionATP binding, nerve growth factor binding, nerve growth factor receptor activity, more...protein homodimerization activity, transmembrane receptor protein tyrosine kinase activity
Biological Processaxonogenesis involved in innervation, negative regulation of cell proliferation, more...negative regulation of neuron apoptotic process, nerve growth factor signaling pathway, neurotrophin TRK receptor signaling pathway, peptidyl-tyrosine phosphorylation, positive regulation of ERK1 and ERK2 cascade, positive regulation of neuron projection development, positive regulation of NF-kappaB transcription factor activity, positive regulation of Ras GTPase activity, positive regulation of Ras protein signal transduction, protein autophosphorylation, protein phosphorylation, sympathetic nervous system development
Cellular Componentearly endosome membrane, integral component of plasma membrane, late endosome membrane
Links to other databases
Entrez Gene396337
Ensembl GeneENSGALG00000019019
KEGGgga:396337

Entry 1

GEISHA IdTRKA.Yang.2010Data SourcePublication
Complete cDNA Template Probeshow
GATGCTTTCCAGGACAACCACAGGCTGAGCCATGTGAATCTCTCCTTCAATGCGTTGACCAGCCTGTCCTGGAAAACCT
TCCAGTATCTGCCCCTGCAGGAGCTCATCCTGGAAGGAAACCCCTTCAATTGCTCCTGTGGGATCCGCTGGCTGCAGCT
GTGGCAGAACGGGAGCCGTGCTGAGCTGGGCAACCAGTCGCTGCTCTGCTGGGAGGGCAGCATGCTTGTTGCCCTGGAC
AGCCACCCCCTGCACGACTGTGAGCCCCCCACTGCCCGCATTGAGCACCCCGATGTGGTGCTGCGCCAAGGGGACAGCG
TCAACCTCACCTGCCACATCTGGGGTGAGCCATCAGCCACCGGGGAGTGGGTGCTCCCTCACGTGGGATCAGAGCCATC
TGTCACCAAGCTCTCGGAGTGGGAGCTTGTCCTGGAGATCAACAACATCTCCTCCAGCCTCAACCACAAGGATCTCACA
TGCCGGGCAGAGAATGCAGTGGGGCTGGCAGAGGACAGCGTGATGCTGAATGTCACCTTCCCGCCGGTGATCCTGCTCC
TCTCTGAGGCCATCCCGCAGCACTTCTGGTGCATCCCCTTCTCGGTGGACAGCAACCCAACGCCCAGAATCCTTTGGCT
CTTCAATGGCTCGATGCTGCCTGAGGGGCCCTACATCCACACACGCATTGTGGAGTATGAGCCCAACTCCACCGTACTG
CACGGCTGCCTCCAGCTCAACCGCCCCACACACGTCAACAACGGCAACTACACCCTCGTGGTGCAGAACCCCCTGGGCA
GAGCCACCCGCAGCATCCAGGGCCGCTTCATGGATAACCCTTTCAGCTTCAGCCCCGAGGAGCCCATCCCCGTGTCCAT
ATCTCCACTGGGCACAAGGAAC
CitationYang M, Cagle MC, Honig MG. Identification of cerebellin2 in chick and its preferential expression by subsets of developing sensory neurons and their targets in the dorsal horn. J Comp Neurol. 2010 Jul 15;518(14):2818-40.
CopyrightCopyright © 2010 Wiley-Liss, Inc.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described in Yang et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 30
stage 30
Spinal Cord
Spinal Ganglia and Nerves
 

Entry 2

GEISHA IdTRKA.Apostolova.2007Data SourcePublication
Complete cDNA Template Probeshow
TGCGATGCTGCCCGCCTGGCTCCGGCTGTGCCTGGCTGCGCTGCTGCTGCCCCCGGGAGCCGCCGTTCCTCCCGCCTGC
CCCGCGCACTGCCGCTGCCCCGCGTCCCACACGCTGCGATGCCGGGAGCCCCTCACCGTGAGCAGCCTCAGCGCCCTGC
TGCTGGGAGCCCACCGCCCCACCGACGTCATCATCGAGAACCAAGCGCTGCTGACATCTCTGACCCGGGATGACACCAG
GATGCTGTGGGACCTCAGGCACCTCACCATCTCCAACTCGGGGCTGCAATACATATCCGACGATGCTTTCCAGGACAAC
CACAGGCTGAGCCATGTGAATCTCTCCTTCAATGCGTTGACCAGCCTGTCCTGGAAAACCTTCCAGTATCTGCCCCTGC
AGGAGCTCATCCTGGAAGGAAACCCCTTCAATTGCTCCTGTGGGATCCGCTGGCTGCAGCTGTGGCAGAACGGGAGCCG
TGCTGAGCTGGGCAACCAGTCGCTGCTCTGCTGGGAGGGCAGCATGCTTGTTGCCCTGGACAGCCACCCCCTGCACGAC
TGTGAGCCCCCCACTGCCCGCATTGAGCACCCCGATGTGGTGCTGCGCCAAGGGGACAGCGTCAACCTCACCTGCCACA
TCTGGGGTGAGCCATCAGCCACCGGGGAGTGGGTGCTCCCTCACGTGGGATCAGAGCCATCTGTCACCAAGCTCTCGGA
GTGGGAGCTTGTCCTGGAGATCAACAACATCTCCTCCAGCCTCAACCACAAGGATCTCACATGCCGGGCAGAGAATGCA
GTGGGGCTGGCAGAGGACAGCGTGATGCTGAATGTCACCTTCCCGCCGGTGATCCTGCTCCTCTCTGAGGCCATCCCGC
AGCACTTCTGGTGCATCCCCTTCTCGGTGGACAGCAACCCAACGCCCAGAATCCTTTGGCTCTTCAATGGCTCGATGCT
GCCTGAGGGGCCCTACATCCACACACGCATTGTGGAGTATGAGCCCAACTCCACCGTACTGCACGGCTGCCTCCAGCTC
AACCGCCCCACACACGTCAACAACGGCAACTACACCCTCGTGGTGCAGAACCCCCTGGGCAGAGCCACCCGCAGCATCC
AGGGCCGCTTCATGGATAACCCTTTCAGCTTCAGCCCCGAGGAGCCCATCCCCGTGTCCATATCTCCACTGGGCACAAG
GAACAGCTCTCTGGAGGGTCCTGTGGAGACAGCGGACGAGCACACATTTGGGGTCTCCGTGGCCGTGGCTTTGGCTGTC
TTCGCCTCCCTCTTCCTCTCTGTCATGCTCATTGCGCTCAACAAGTGCGGGCACCGCTCCAAGTTCGGCATTAACCGAT
CAGCCGTGCTGGCCCAGGAGGATGACCTGGCCATGTCACTGCACTTCATGAACCTGGGCAGCAGCCCCGTGTCCTCCAC
AGAGAGCAAGCTGGACGGGCTGAAGAGCAACTTCATCGAGAACCCGCAGTACTTCTGCAACGCCTGTGTGCACCACGTG
CAGCGCCGCGACATTGTGCTCAAGTGGGAGCTGGGAGAGGGCGCCTTTGGGAAGGTCTTCCTGGCCGAGTGTTCCCACC
TCCTCCCGGAGCAGGAGAAGACATTGGTGGCTGTGAAGGCGCTGAAGGAGGTGACGGAGAGCGCGCGGCTCGACTTCCA
GCGGGAAGCAGAGCTGCTGACGGTGCTGCAGCACGAACACATCGTCAAGTTCTACGGCGTGTGCACCGAGGGTGAGCCC
CTCATCATGGTCTTCGAGTACATGAAGCATGGAGACCTCAACCGCTTCCTCAGGTCCCACGGGCCAGATGCCAAGATCC
TGGACCAAGGGCAGGGGCAGCCCTGCGGGCAGCTGACACTGAGCCACATGCTGCAGATCGCCACGCAGATCGCCTCAGG
GATGGTTTACCTGGCATCCCTGCACTTCGTGCACCGTGACCTGGCCACACGCAACTGCCTGGTGGGTCACGACCTGGTG
GTGAAGATTGGGGACTTCGGCATGTCCCGCGATATCTACAGCACCGACTACTACCGGGTGGGCGGTCGGACCATGCTGC
CCATCCGCTGGATGCCCCCTGAGAGCATCCTGTACCGCAAGTTCACCACTGAGAGTGACATCTGGAGCTTTGGCGTGGT
GCTGTGGGAGATCTTCACCTATGGGAAGCAGCCCTGGTATCAACTCTCCAACACTGAGGCCATCGAGTGCATCACGCAG
GGCCGGGAGCTGGAGCGGCCCCGCACGTGTCCCTCCGAGGTGTATGATATCATGCAGAGCTGCTGGCAGAGAGAGCCGC
AGCAGCGCCAGCGCATCCAGGACATCCACAGCCGCCTGCAGGCCCTGGTCAAGACCCCTCCCATCTACCTGGACATCCT
GGGGTGAGAGGGAACCCCATCATCCTCAAGCTGGCCGGAGCGCTCTGGCACCGCTCTCTCTGTCCCCCCACCCTGGACT
GATGCCCTGACGCTGGAGAGGTCTTAAACCCTGTTTGTCACAGCGAGCCTCCTGGGGGGCTGTAGGGCTGGAGCTGTGC
CCGCGGGGGGGCTGTGGCTGTGCATTTCCCCACTGTGGGTTTGTCCCTGGAGGGAGACAACCGGGACCCCCAGCCCCAC
GGGGATCACTTGGCTGCTCAGTGCCATGGCTGCTCCATCCCTCCCCATCCCAGTGCCCAGCTGTGTGGATACCCCGCGT
GCTCTCCCACTCTGCGGTGATCCTGGTTGGTAATAAAATTCTCCACCTCTCT
CitationApostolova G, Dorn R, Ka S, Hallböök F, Lundeberg J, Liser K, Hakim V, Brodski C, Michaelidis TM, Dechant G. Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons. Mol Cell Neurosci. 2007 Jul;35(3):397-408. Epub 2007 Apr 1.
CopyrightCopyright © 2007 Elsevier Inc. All rights reserved.
Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205378.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 44
stage 44
Spinal Ganglia and Nerves
 

Entry 3

GEISHA IdTRKA.Karlsson.1998Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
TGCGATGCTGCCCGCCTGGCTCCGGCTGTGCCTGGCTGCGCTGCTGCTGCCCCCGGGAGCCGCCGTTCCTCCCGCCTGC
CCCGCGCACTGCCGCTGCCCCGCGTCCCACACGCTGCGATGCCGGGAGCCCCTCACCGTGAGCAGCCTCAGCGCCCTGC
TGCTGGGAGCCCACCGCCCCACCGACGTCATCATCGAGAACCAAGCGCTGCTGACATCTCTGACCCGGGATGACACCAG
GATGCTGTGGGACCTCAGGCACCTCACCATCTCCAACTCGGGGCTGCAATACATATCCGACGATGCTTTCCAGGACAAC
CACAGGCTGAGCCATGTGAATCTCTCCTTCAATGCGTTGACCAGCCTGTCCTGGAAAACCTTCCAGTATCTGCCCCTGC
AGGAGCTCATCCTGGAAGGAAACCCCTTCAATTGCTCCTGTGGGATCCGCTGGCTGCAGCTGTGGCAGAACGGGAGCCG
TGCTGAGCTGGGCAACCAGTCGCTGCTCTGCTGGGAGGGCAGCATGCTTGTTGCCCTGGACAGCCACCCCCTGCACGAC
TGTGAGCCCCCCACTGCCCGCATTGAGCACCCCGATGTGGTGCTGCGCCAAGGGGACAGCGTCAACCTCACCTGCCACA
TCTGGGGTGAGCCATCAGCCACCGGGGAGTGGGTGCTCCCTCACGTGGGATCAGAGCCATCTGTCACCAAGCTCTCGGA
GTGGGAGCTTGTCCTGGAGATCAACAACATCTCCTCCAGCCTCAACCACAAGGATCTCACATGCCGGGCAGAGAATGCA
GTGGGGCTGGCAGAGGACAGCGTGATGCTGAATGTCACCTTCCCGCCGGTGATCCTGCTCCTCTCTGAGGCCATCCCGC
AGCACTTCTGGTGCATCCCCTTCTCGGTGGACAGCAACCCAACGCCCAGAATCCTTTGGCTCTTCAATGGCTCGATGCT
GCCTGAGGGGCCCTACATCCACACACGCATTGTGGAGTATGAGCCCAACTCCACCGTACTGCACGGCTGCCTCCAGCTC
AACCGCCCCACACACGTCAACAACGGCAACTACACCCTCGTGGTGCAGAACCCCCTGGGCAGAGCCACCCGCAGCATCC
AGGGCCGCTTCATGGATAACCCTTTCAGCTTCAGCCCCGAGGAGCCCATCCCCGTGTCCATATCTCCACTGGGCACAAG
GAACAGCTCTCTGGAGGGTCCTGTGGAGACAGCGGACGAGCACACATTTGGGGTCTCCGTGGCCGTGGCTTTGGCTGTC
TTCGCCTCCCTCTTCCTCTCTGTCATGCTCATTGCGCTCAACAAGTGCGGGCACCGCTCCAAGTTCGGCATTAACCGAT
CAGCCGTGCTGGCCCAGGAGGATGACCTGGCCATGTCACTGCACTTCATGAACCTGGGCAGCAGCCCCGTGTCCTCCAC
AGAGAGCAAGCTGGACGGGCTGAAGAGCAACTTCATCGAGAACCCGCAGTACTTCTGCAACGCCTGTGTGCACCACGTG
CAGCGCCGCGACATTGTGCTCAAGTGGGAGCTGGGAGAGGGCGCCTTTGGGAAGGTCTTCCTGGCCGAGTGTTCCCACC
TCCTCCCGGAGCAGGAGAAGACATTGGTGGCTGTGAAGGCGCTGAAGGAGGTGACGGAGAGCGCGCGGCTCGACTTCCA
GCGGGAAGCAGAGCTGCTGACGGTGCTGCAGCACGAACACATCGTCAAGTTCTACGGCGTGTGCACCGAGGGTGAGCCC
CTCATCATGGTCTTCGAGTACATGAAGCATGGAGACCTCAACCGCTTCCTCAGGTCCCACGGGCCAGATGCCAAGATCC
TGGACCAAGGGCAGGGGCAGCCCTGCGGGCAGCTGACACTGAGCCACATGCTGCAGATCGCCACGCAGATCGCCTCAGG
GATGGTTTACCTGGCATCCCTGCACTTCGTGCACCGTGACCTGGCCACACGCAACTGCCTGGTGGGTCACGACCTGGTG
GTGAAGATTGGGGACTTCGGCATGTCCCGCGATATCTACAGCACCGACTACTACCGGGTGGGCGGTCGGACCATGCTGC
CCATCCGCTGGATGCCCCCTGAGAGCATCCTGTACCGCAAGTTCACCACTGAGAGTGACATCTGGAGCTTTGGCGTGGT
GCTGTGGGAGATCTTCACCTATGGGAAGCAGCCCTGGTATCAACTCTCCAACACTGAGGCCATCGAGTGCATCACGCAG
GGCCGGGAGCTGGAGCGGCCCCGCACGTGTCCCTCCGAGGTGTATGATATCATGCAGAGCTGCTGGCAGAGAGAGCCGC
AGCAGCGCCAGCGCATCCAGGACATCCACAGCCGCCTGCAGGCCCTGGTCAAGACCCCTCCCATCTACCTGGACATCCT
GGGGTGAGAGGGAACCCCATCATCCTCAAGCTGGCCGGAGCGCTCTGGCACCGCTCTCTCTGTCCCCCCACCCTGGACT
GATGCCCTGACGCTGGAGAGGTCTTAAACCCTGTTTGTCACAGCGAGCCTCCTGGGGGGCTGTAGGGCTGGAGCTGTGC
CCGCGGGGGGGCTGTGGCTGTGCATTTCCCCACTGTGGGTTTGTCCCTGGAGGGAGACAACCGGGACCCCCAGCCCCAC
GGGGATCACTTGGCTGCTCAGTGCCATGGCTGCTCCATCCCTCCCCATCCCAGTGCCCAGCTGTGTGGATACCCCGCGT
GCTCTCCCACTCTGCGGTGATCCTGGTTGGTAATAAAATTCTCCACCTCTCT
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205378.1). Also known as: trkA; CTRKA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 35
stage 35
stage 41
stage 44
Retina
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.579

Mouse

EmageMGI:97383
EurexpressMGI:97383
MGI GXDMGI:97383

Frog

Xenbase923000

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-118
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