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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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TCF12
transcription factor 12

Gene

Official Symbol	TCF12
Official Full Name	transcription factor 12
CGNC ID	49756
also known as	transcription factor 12\|E-box-binding protein\|TCF-12\|basic helix-loop-helix protein\|class A helix-loop-helix transcription factor GE1\|transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)\|transcription factor HTF-4, Class A helix-loop-helix transcription factor GE2, Transcription factor 4
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205375
Polypeptide	NP_990706

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	34413			FBgn0000413
Human	6938	ENSG00000140262		MIM:600480
Mouse	21406	ENSMUSG00000032228	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:101877
Xenopus	100188922, 399451			5799693
Zebrafish	407985	ENSDARG00000004714	ZDB-GENE-040516-11	ZFIN:ZDB-GENE-040516-11

Gene Ontology

Molecular Function	E-box binding, protein heterodimerization activity
Biological Process	positive regulation of neuron differentiation, regulation of transcription, DNA-templated, more...transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	396334
Ensembl Gene	ENSGALG00000004304
KEGG	gga:396334

Entry 1

GEISHA Id	ChEST187p16	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CGCAGCCCGGCGCCTCGCCATGTACTGCGCCTACCCCGTGCCGGGCGTGGGCAGCAGCTCCCTCATGTACTACTATAAC GGCAAGACGGTGTATGCACCATCTCCGAGTTCTGATGAATTCAACAGAGAATCTCCAAGTTACCCGTCTCCTAAGCCAC CAAGCAGTATGTTTGCTAGCACTTTCTTTATGCAAGATGGGACCCATAACTCTTCTGACCTCTGGAGTTCATCCAATGG CATGAGCCAGCCTGGCTATGGTGGAATGCTGGGAGGCTCCTCTTCCCACATGTCCCAGTCCGGCAGTTACGGCAGCCTG CACACACACGACCGTTTGAGCTATCCCCCGCATTCAGTCTCGCCTACGGATATAAATGCCAGTCTTCCTCCAATGTCAA GCTTCCATCGTGGCAGCACCAGCAGTTCACCTTACGTAGCTGCCTCACACACTCCACCTGTCAATGGATCAGAGAATAT TCTGGGAAACAGAGGAAATGGCGCTGGAGGCTCACAGACAGGCGATGCGCTTGGGAAGGCATTGGCATCTATTTATTCT CCTGATCATACCAGCAGTAGTTTTCCATCAAATCCATCAACACCAGTTGGATCACCATCGCCGCTTACAGGTGCCAGTC AGTGGTCTAGGAGTGGAGGACAAGCCCCCTCATCTCCAAACTATGAAAACTCTCTACACTCCTTGAAAAATCGAGTTGA ACAGCAACTTCACGAGCATTTGCAAGATGCAATGTCCTTCTTAAAGGATGTCTGTGAGTCTCGAATGGAGGATCGCTTG GACAGACTCGATGATGC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Area Pellucida

7-12

stage 7

stage 8

stage 12

Extraembryonic
Extraembryonic Mesoderm
Head Mesenchyme
Headfold
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Pituitary (Rudiment)
Primitive Streak

Twin

13-18

stage 15

Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Paraxial Mesoderm

19-23

stage 19

stage 21

stage 23

Face Mesenchyme
Head Mesenchyme
Lateral Plate Mesoderm
Leg Mesenchyme
Mesoderm
Paraxial Mesoderm
Widespread Expression
Wing Mesenchyme

Entry 2

GEISHA Id	TCF12.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TACACCCAGGAAGCCACCCTGGCCTGAGTGAAACTACCAACCCTATGGGTCATATGTGAACACCAGCCAGAATTATTGG TAGGATACACAGAAGGTGACCTTTCTTCACAAGGACACAGACAACTAACATTATATGAAGACACAAACCTGACAGGAGA AAACACTTGAAGCAAGAAACCCAAATGCAATCTTATGATCAAAGCTACTGGTCAACACCTGCATCAGGATTGAAGATAG AGGATCTTCAGATAGAATTTCAGCCCATGAAATACTCTGAACATATCATTCTGTTGCAAGCAGTGTGTCGCTTCTGCAC AATCAGAGACTGTTGTGATCTCTCCACTCATTGTGGAAGTTGCCTTGTGCCTAAACTGAATTGACAAATGCATTGTAAC TACAAATTTTATTTATTGTTATGGAACTGTAAAGGTCTACATATAAAGGGAAAAGTTAACATGTTAAAAGCTGATACAA TTTCAGCTGGATGCCAGCATTTATTAAAGCTGTTCACATTCAGAGAACAAAGCAGTGACAACCGTCGACCCGTAGCATT CCCAGCATACCTATTAGTGTCTTAAAAAAGGAAGGGAACAAGTCTTTTGTTGTCCTTTCCTCTCCTTTTGCCATATGAC TAGTGTTTTCCACGCAATAGGAAACTATTCCTTGGTATAGCTTTTTTTCATGTTATTTTGGTCTCTGGTAATCTGAACA GTTATGGTCATAGTTACCCTTCCATACTGAGCTCCGTGTTTCAGGCCGGTAAAGGGGCCTCCTGAGCAGGCTCCAGGCA GGAGCAGTACTGTGACATAAATTTCGTAGATTTAAAACTTGATTTATTTCCCTCAGACTTTCTCAAAATGTTTACTATT ATAAACAAA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.