Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

TCF12
transcription factor 12

Gene

Official Symbol	TCF12
Official Full Name	transcription factor 12
CGNC ID	49756
also known as	transcription factor 12\|E-box-binding protein\|TCF-12\|basic helix-loop-helix protein\|class A helix-loop-helix transcription factor GE1\|transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)\|transcription factor HTF-4, Class A helix-loop-helix transcription factor GE2, Transcription factor 4
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205375
Polypeptide	NP_990706
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.56002

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	34413			FBgn0000413
Human	6938	ENSG00000140262		MIM:600480
Mouse	21406	ENSMUSG00000032228	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:101877
Xenopus	100188922, 399451			5799693
Zebrafish	407985	ENSDARG00000004714	ZDB-GENE-040516-11	ZFIN:ZDB-GENE-040516-11

Gene Ontology

Molecular Function	E-box binding, protein heterodimerization activity
Biological Process	positive regulation of neuron differentiation, regulation of transcription, DNA-templated, more...transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	396334
Ensembl Gene	ENSGALG00000004304
KEGG	gga:396334

Entry 1

GEISHA Id	ChEST187p16	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CGCAGCCCGGCGCCTCGCCATGTACTGCGCCTACCCCGTGCCGGGCGTGGGCAGCAGCTCCCTCATGTACTACTATAAC GGCAAGACGGTGTATGCACCATCTCCGAGTTCTGATGAATTCAACAGAGAATCTCCAAGTTACCCGTCTCCTAAGCCAC CAAGCAGTATGTTTGCTAGCACTTTCTTTATGCAAGATGGGACCCATAACTCTTCTGACCTCTGGAGTTCATCCAATGG CATGAGCCAGCCTGGCTATGGTGGAATGCTGGGAGGCTCCTCTTCCCACATGTCCCAGTCCGGCAGTTACGGCAGCCTG CACACACACGACCGTTTGAGCTATCCCCCGCATTCAGTCTCGCCTACGGATATAAATGCCAGTCTTCCTCCAATGTCAA GCTTCCATCGTGGCAGCACCAGCAGTTCACCTTACGTAGCTGCCTCACACACTCCACCTGTCAATGGATCAGAGAATAT TCTGGGAAACAGAGGAAATGGCGCTGGAGGCTCACAGACAGGCGATGCGCTTGGGAAGGCATTGGCATCTATTTATTCT CCTGATCATACCAGCAGTAGTTTTCCATCAAATCCATCAACACCAGTTGGATCACCATCGCCGCTTACAGGTGCCAGTC AGTGGTCTAGGAGTGGAGGACAAGCCCCCTCATCTCCAAACTATGAAAACTCTCTACACTCCTTGAAAAATCGAGTTGA ACAGCAACTTCACGAGCATTTGCAAGATGCAATGTCCTTCTTAAAGGATGTCTGTGAGTCTCGAATGGAGGATCGCTTG GACAGACTCGATGATGC

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Area Pellucida

7-12

stage 7

stage 8

stage 12

Extraembryonic
Extraembryonic Mesoderm
Head Mesenchyme
Headfold
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Pituitary (Rudiment)
Primitive Streak

Twin

13-18

stage 15

Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Paraxial Mesoderm

19-23

stage 19

stage 21

stage 23

Face Mesenchyme
Head Mesenchyme
Lateral Plate Mesoderm
Leg Mesenchyme
Mesoderm
Paraxial Mesoderm
Widespread Expression
Wing Mesenchyme

Entry 2

GEISHA Id	TCF12.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TACACCCAGGAAGCCACCCTGGCCTGAGTGAAACTACCAACCCTATGGGTCATATGTGAACACCAGCCAGAATTATTGG TAGGATACACAGAAGGTGACCTTTCTTCACAAGGACACAGACAACTAACATTATATGAAGACACAAACCTGACAGGAGA AAACACTTGAAGCAAGAAACCCAAATGCAATCTTATGATCAAAGCTACTGGTCAACACCTGCATCAGGATTGAAGATAG AGGATCTTCAGATAGAATTTCAGCCCATGAAATACTCTGAACATATCATTCTGTTGCAAGCAGTGTGTCGCTTCTGCAC AATCAGAGACTGTTGTGATCTCTCCACTCATTGTGGAAGTTGCCTTGTGCCTAAACTGAATTGACAAATGCATTGTAAC TACAAATTTTATTTATTGTTATGGAACTGTAAAGGTCTACATATAAAGGGAAAAGTTAACATGTTAAAAGCTGATACAA TTTCAGCTGGATGCCAGCATTTATTAAAGCTGTTCACATTCAGAGAACAAAGCAGTGACAACCGTCGACCCGTAGCATT CCCAGCATACCTATTAGTGTCTTAAAAAAGGAAGGGAACAAGTCTTTTGTTGTCCTTTCCTCTCCTTTTGCCATATGAC TAGTGTTTTCCACGCAATAGGAAACTATTCCTTGGTATAGCTTTTTTTCATGTTATTTTGGTCTCTGGTAATCTGAACA GTTATGGTCATAGTTACCCTTCCATACTGAGCTCCGTGTTTCAGGCCGGTAAAGGGGCCTCCTGAGCAGGCTCCAGGCA GGAGCAGTACTGTGACATAAATTTCGTAGATTTAAAACTTGATTTATTTCCCTCAGACTTTCTCAAAATGTTTACTATT ATAAACAAA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.