GEISHA - A Chicken Embryo Gene Expression Database
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LHX9
LIM homeobox 9

Gene
Official SymbolLHX9
Official Full NameLIM homeobox 9
CGNC ID1590
also known asLH-2, LIM/homeobox protein Lhx9|LIM homeobox protein 9|homeobox protein, LIM homeobox 9
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205426
PolypeptideNP_990757
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2348
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human56956MIM:606066
Mouse16876ENSMUSG00000019230All phenotypic alleles (6):Targeted, knock-out(1) Targeted, other(5) MGI:1316721
Xenopus100489035, 447351, 373755492043
Zebrafish550405ENSDARG00000056979ZDB-GENE-050417-210ZFIN:ZDB-GENE-050417-210
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, more...transcription corepressor activity, zinc ion binding
Biological Processmotor neuron axon guidance, negative regulation of transcription, DNA-templated, more...spinal cord motor neuron differentiation
Cellular Componentnucleus
Links to other databases
Entrez Gene396397
Ensembl GeneENSGALG00000002223
KEGGgga:396397

Entry 1

GEISHA IdChEST847c21Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AAAGACTCTGGGGTCTGTATATGGAAATAGTGGGGTGCAGAGCAGAAGAAAATACTTGTCCTTTCCGTCCCCCAGCCAT
GCTTTTCCACGGGATCTCCGGAGGCCACATCCAAGGAATCATGGAGGAGATGGAGAGGCGATCCAAGACCGAGTCCCGC
CTGGCCAAAGGGGGACAGATGAACGGCCGAGAAACGAAGGTTCTCCGTGCAGAGATGTGCCCGCTGCCACCTTGGGATC
TCAGCCTCTGAAATGGTCATGAGAGCCAGGAGTCGGTTTATCACTTGAGCTGTTCACCTGCACCACCTTGCAAGACTCT
GACCACGGGTGATCACTTTGGCATGAAGGACAACCTGGTTTACTGCAGGGCCCACTTCGAGTCCCTTTTGCAAGGAGAA
TACCCCCTCAGTGAGCTACACCGAGTTGGCAGCCAAGACCGGAGGGCTTGGCCTGCCCTACTTCAACGGCACGGGCACC
GTGCCAGAAGGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Unlabeled
 
7-12
stage 7
stage 8
stage 10
stage 11
stage 12
Forebrain
Neural Plate/Tube
 
13-18
stage 13
stage 16
stage 17
stage 18
Hindbrain
Leg Mesenchyme
Pineal Gland
Proepicardium
Retina
Telencephalon
Wing Mesenchyme
 
19-23
stage 19
stage 21
stage 23
Eye
Forebrain
Hindbrain
Intermediate Mesoderm
Leg Mesenchyme
Limb Buds
Pineal Gland
Wing Mesenchyme
 

Entry 2

GEISHA IdLhx9.Mazaud.2002Data SourcePublication
Complete cDNA Template Probeshow
TCCGGAACTTTAAAGCAACCAGGGACTGCTTGAAAATAGCACTTCTTTTTGCTTTCTTTGTATTCAAAACTGTATCCTC
TCCCGACCGGTTCTGCCGCCCCAGGTCCGAGTCTCTCCGGTCAGGAGCCCCGGCTTTCCAGAACAGTAACAGCTCCTTT
AGCTCGCTTTTCTTCTTTGATTTTTCAAACTAATTACTATTACGTTTTCTTCCCCTTGTTTGTTTTCCGCACACCTTCA
GGAAGCCCTCGGTGCTTGAGCAAAGAGAAGCTCCTATTGCAACCTCCTTCCCTGTGCCGTGCGCCTCGGTGTAAACATT
TTGGATGATCTAAAGACTCTGGGGTCTGTATATGGAAATAGTGGGGTGCAGAGCAGAAGAAAATACTTGTCCTTTCCGT
CCCCCAGCCATGCTTTTCCACGGGATCTCCGGAGGCCACATCCAAGGAATCATGGAGGAGATGGAGAGGCGATCCAAGA
CCGAGTCCCGCCTGGCCAAAGGGGGACAGATGAACGGCCGAGAAACGAACATGCCCCCCATGAGCCCCGAGAAGCCCGC
TTTGTGCGCTGGGTGTGGAGGGAAGATCTCAGACAGATATTACCTGCTGGCTGTTGACAAACAATGG
CitationMazaud S, Oréal E, Guigon CJ, Carré-Eusèbe D, Magre S. Lhx9 expression during gonadal morphogenesis as related to the state of cell differentiation. Gene Expr Patterns. 2002 Dec;2(3-4):373-7.
CopyrightReprinted from Gene Expression Patterns, Volume 2, Issue 3-4, S. Mazaud, E Oréal, C.J. Gulgon, D. Carré-Eusèbe, and S. Magre, Lhx9 expression during gonadal morphogenesis as related to the state of cell differentiation, Pages 373-377, Copyright 2002, with permission from Elsevier. Copyright © 2002 Elsevier B.V. All rights reserved.
CommentsThe authors said: Chick Lhx9 and AMH probes were described previously ([Oreal et al]), who said: Genbank accession numbers and nucleotide positions are as follows:Lhx9 (also called LH-2B), L35566, position 4-624.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-38
stage 35
stage 38
Testis
testes

Entry 3

GEISHA IdLHX9.Abellan.2009Data SourcePublication
Complete cDNA Template Probeshow
ATTACCTGCTGGCTGTTGACAAACAATGGCACCTCAGGTGTCTTAAGTGCTGTGAATGTAAACTGGCTTTGGAGTCAGA
ACTCACCTGCTTTGCCAAGGACGGCAGTATTTACTGCAAGGAGGATTACTACAGAAGGTTCTCCGTGCAGAGATGTGCC
CGCTGCCACCTTGGGATCTCAGCCTCTGAAATGGTCATGAGAGCCAGGGAGTCGGTTTATCACTTGAGCTGCTTCACCT
GCACCACCTGCAACAAGACTCTGACCACGGGTGATCACTTTGGCATGAAGGACAACCTGGTTTACTGCAGGGCCCACTT
CGAGTCCCTTTTGCAAGGAGAATACCCCCCTCAGCTGAGCTACACCGAGTTGGCAGCCAAGAGCGGAGGGCTGGCCCTG
CCCTACTTCAACGGCACGGGCACCGTGCAGAAGGGGAGGCCCAGGAAACGAAAAAGCCCTGCCCTGGGAGTGGACATCG
TCAACTACAACTCAGGTTGTAATGAGAACGAGGCAGATCACATGGACAGAGACCAGCAGCCTTATCCCCCATCCCAGAA
GACAAAGCGCATGGCGACCTCCTTCAAACACCACCAGCTTCGTACCATGAAGTCCTACTTTGCTATCAACCACAACCCA
GATGCCAAGGACCTCAAGCAGCTTGCCCAGAAAACAGGCCTGACCAAGAGAGTTCTGCAGGTTTGGTTTCAAAACGCAA
GAGCCAAATTCAGAAGGAACCTTTTGCGGCAGGAGAATGGGGGTGTCGATAAAGCGGACGGCACCTCACTTCCGGCACC
GCCCTCCGCAGACAGCGGCGCTCTCACTCCACCCGGCACTGCGACCACTTTAACAGACCTGACCAATCCCACTATCACT
GTAGTGACATCAGTGACCTCTAACTTGGACAGCCACGA
CitationAbellán A, Legaz I, Vernier B, Rétaux S, Medina L. Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes. J Comp Neurol. 2009 Sep 20;516(3):166-86.
CopyrightCopyright © 2009 Wiley-Liss, Inc.
CommentsThe sequence below was obtained from NCBI (acc # NM_205426.1 - Showing 906 bp region from base 596 to 1502) using the information provided in the publication.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 35
stage 35
stage 35
stage 35
stage 35
stage 35
stage 36
stage 37
stage 37
stage 40
stage 40
stage 40
stage 40
stage 40
stage 40
stage 40
stage 40
stage 42
stage 42
stage 42
stage 42
stage 42
stage 42
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
Telencephalon
frontal section
hatchlings (PO)
horizontal section
horizontal section
sagittal section

Entry 4

GEISHA IdLHX9.Sun.2008Data SourcePublication
Complete cDNA Template Probeshow
GAATTCCGGAACTTTAAAGCAACCAGGGACTGCTTGAAAATAGCACTTCTTTTTGCTTTCTTTGTATTCAAAACTGTAT
CCTCTCCCGACCGGTTCTGCCGCCCCAGGTCCGAGTCTCTCCGGTCAGGAGCCCCGGCTTTCCAGAACAGTAACAGCTC
CTTTAGCTCGCTTTTCTTCTTTGATTTTTCAAACTAATTACTATTACGTTTTCTTCCCCTTGTTTGTTTTCCGCACACC
TTCAGGAAGCCCTCGGTGCTTGAGCAAAGAGAAGCTCCTATTGCAACCTCCTTCCCTGTGCCGTGCGCCTCGGTGTAAA
CATTTTGGATGATCTAAAGACTCTGGGGTCTGTATATGGAAATAGTGGGGTGCAGAGCAGAAGAAAATACTTGTCCTTT
CCGTCCCCCAGCCATGCTTTTCCACGGGATCTCCGGAGGCCACATCCAAGGAATCATGGAGGAGATGGAGAGGCGATCC
AAGACCGAGTCCCGCCTGGCCAAAGGGGGACAGATGAACGGCCGAGAAACGAACATGCCCCCCATGAGCCCCGAGAAGC
CCGCTTTGTGCGCTGGGTGTGGAGGGAAGATCTCAGACAGATATTACCTGCTGGCTGTTGACAAACAATGGCACCTCAG
GTGTCTTAAGTGCTGTGAATGTAAACTGGCTTTGGAGTCAGAACTCACCTGCTTTGCCAAGGACGGCAGTATTTACTGC
AAGGAGGATTACTACAGAAGGTTCTCCGTGCAGAGATGTGCCCGCTGCCACCTTGGGATCTCAGCCTCTGAAATGGTCA
TGAGAGCCAGGGAGTCGGTTTATCACTTGAGCTGCTTCACCTGCACCACCTGCAACAAGACTCTGACCACGGGTGATCA
CTTTGGCATGAAGGACAACCTGGTTTACTGCAGGGCCCACTTCGAGTCCCTTTTGCAAGGAGAATACCCCCCTCAGCTG
AGCTACACCGAGTTGGCAGCCAAGAGCGGAGGGCTGGCCCTGCCCTACTTCAACGGCACGGGCACCGTGCAGAAGGGGA
GGCCCAGGAAACGAAAAAGCCCTGCCCTGGGAGTGGACATCGTCAACTACAACTCAGGTTGTAATGAGAACGAGGCAGA
TCACATGGACAGAGACCAGCAGCCTTATCCCCCATCCCAGAAGACAAAGCGCATGGCGACCTCCTTCAAACACCACCAG
CTTCGTACCATGAAGTCCTACTTTGCTATCAACCACAACCCAGATGCCAAGGACCTCAAGCAGCTTGCCCAGAAAACAG
GCCTGACCAAGAGAGTTCTGCAGGTTTGGTTTCAAAACGCAAGAGCCAAATTCAGAAGGAACCTTTTGCGGCAGGAGAA
TGGGGGTGTCGATAAAGCGGACGGCACCTCACTTCCGGCACCGCCCTCCGCAGACAGCGGCGCTCTCACTCCACCCGGC
ACTGCGACCACTTTAACAGACCTGACCAATCCCACTATCACTGTAGTGACATCAGTGACCTCTAACTTGGACAGCCACG
AACCCGGGAGCCCCTCACAAACTACCTTAACGAACCTTTTCTAACATTGCCG
CitationSun X, Saitsu H, Shiota K, Ishibashi M. Expression dynamics of the LIM-homeobox genes, Lhx1 and Lhx9, in the diencephalon during chick development. Int J Dev Biol. 2008;52(1):33-41.
Copyright© UBC Press and the authors
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Anterior Neuropore
Forebrain
 
13-18
stage 14
stage 16
stage 18
stage 18
Diencephalon
Eye
Forebrain
Hindbrain
Pituitary (Rudiment)
Telencephalon
 
19-22
stage 20
stage 22
stage 22
Eye
Forebrain
Hindbrain
Mesencephalon
Nasal Placode/Nerve
Pineal Gland
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2348

Mouse

EmageMGI:1316721
EurexpressMGI:1316721
MGI GXDMGI:1316721

Frog

Xenbase492043

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050417-210
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