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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PTPRU
protein tyrosine phosphatase, receptor type U

Gene

Official Symbol	PTPRU
Official Full Name	protein tyrosine phosphatase, receptor type U
CGNC ID	996
also known as	receptor-type tyrosine-protein phosphatase U\|R-PTP-U\|R-PTP-psi\|cRPTPPSI\|phosphoprotein phosphatase\|receptor tyrosine phosphatase\|receptor-type protein-tyrosine phosphatase psi, protein tyrosine phosphatase, receptor type, U , receptor tyrosine phosphatase Psi
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204492
Polypeptide	NP_989823
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.43624

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	10076	ENSG00000060656		MIM:602454
Mouse	19273	ENSMUSG00000028909	All phenotypic alleles (2):Targeted, other(2)	MGI:1321151
Xenopus	733850			922687
Zebrafish	100331611, 335096, 563584	ENSDARG00000078090, ENSDARG00000092638	ZDB-GENE-030131-7036, ZDB-GENE-060503-232	ZFIN:ZDB-GENE-030131-7036, ZFIN:ZDB-GENE-060503-232

Gene Ontology

Molecular Function	protein tyrosine phosphatase activity
Biological Process	cell adhesion, cell differentiation
Cellular Component	cell junction, integral component of membrane, plasma membrane

Links to other databases

Entrez Gene	395153
Ensembl Gene
KEGG	gga:395153

Entry 1

GEISHA Id	RPTPΨ.Aerne.2003	Data Source	Publication
Complete cDNA Template Probe	show CGTTTCTTTCTTCTTTTCTTCGCCCTCGCACCATGCGCAGCGCCCGGGCGCTGCTGCTCGCCCTCGCCCTGCGGGTGTG CGCGTTGGACAGCGAGACGCCCTCGGCGGGCTGCACCTTCGAGGAGGACGACGACCTGAACCAGTGTGAGTACAGCCAG GGTGAGGATGACGACTTCGGGTGGGAGTTGGTCCGCAGCTACATGATGCCACACCTGACGGCTGACCTGCCCCACGGCT CCTACCTGATGGTGAACGCCTCGCAGCACGCCGCTGGCCAGAGGGCCCACCTGCTCTTCCAGGCGCTGAGCGAGAACGA CACCCACTGCCTGCAGTTCAGCTACTTCATGTACAGCCGTGATGGTCACAGCCCCGGCACCCTCAGCGCCTACGTGCGG GTGATGGGGGGCCCGGTGGGCAGTGCGGTCTGGAATGCCTCAGGCTCCCACGGCCGCCAGTGGCACCAGGCTGAGCTGG CCGTCAGCTTGTTCTGGCCCAGCGAGTACCAGGTCCTCTTCGAGGCGGTGATCTCCAGCGAGCGCCGGGGCTACCTTGG CTTGGATGACATCTTGCTCTTGAATTATCCATGCTCGAAAGCCCCTCACTTCTCCCGCCTGGGTGACGTGGAGGTGAAT GCGGGGCAAAATGCCACCTTCCAGTGTGTGGCTGCTGGCAAGGCTGCCGAGGCAGAGCGCTTCCTCATGCAGAGGCAGA GTGGCGAAGTGGTCCCCGCTGCCTCCGTGAAGCACATCAGCCACCGGCGCTTCCTGGCCACCTTCCAGCTGGACGAGGT GTCCAAAGGCGAGCAGGACCTGTACCGCTGTGTCACCCAGTCCAGCCGTGGCTCAGGGGTCTCCAACTTTGCTGAGCTC ATTGTGAAAGAGCCCCCAACACCCATCGCACCCCCCCAGCTGCTGCGGGCTGGCTCCACCTACCTCATCATCCAGCTCA ACACCAACTCCATCATCGGCGACGGCCCCATCGTGCGCAAGGAGATAGAGTACCGCATGACCTCGGGGCCATGGTCAGA GGTGCACGCTGTCAACATGCAGACCTACAAGCTCTGGCACCTGGATCCTGACACAGAGTACGAGATCAGCGTCCTGCTG ACGCGTCCCGGTGAAGGGGGCACAGGCAAACCGGGACCCCCCCTCATCAGCCGCACCAAGTGTGCAGAGCCCATGCGGG CCCCCAAAGGCCTGGCTTTCTCCGAGATCCAATCCAGGCAGCTGACACTGCAGTGGGAACCGCTGGGCTACAACCTGAC CCGCTGCCACACCTACAGCGTCTCGCTGTGCTACCGCTACCTGGTGGGCAGCGGCCTCAACCAGACCTTCCGCGAGTGC GCCAAGATGGAGCGCAACGCCAACCGCTACACCATCAAAAACCTGCTGCCCTACAGGAACATCCACGTCAAGCTCATCC TCTCCAACCCCGAGGGCCGCAAGGAGGGCAAGGAGGTGACGTTCCAGACGGATGAGGACGTGCCTGGTGGCATCGCCTC TGAGTCACTCACCTTCACCCCTCTGGAGGACATGATCTTTCTGAAGTGGGAGGAACCGGTGGAGCCCAATGGCCTCATC ACGCAGTACGAGATCAGCTACCAAAGCATTGAGTCCTCTGACCCAGCAGTCAACGTTCCCGGCCCGCGACGCACCGTCT CCAAGCTGCGCAATGAGACGTACCACGTCTTCTCCAACCTGCACCCTGGCACCACCTACCTCTTCTCAGTGCGTGCCCG CACAGGCAAGGGCTTTGGCCAGACAGCGCTCACAGAGATCACCACCAACATATCTGCTCCCACCTTCGACTATGGGGAT ATGCCATCACCTCTGGGCGAGTCAGAGAGCACAATCACGGTGCTGCTGCGGCCGGCGCAGGGCCGGGGGGCTCCCATCA GTACCTACCAGGTCATCGTGGAGGAGGACCGGCCCAAGAGGATCAAGCGGGAGCTGGGTGGGCAGGAGTGCTTCCCGGT GCCACTGACGTTTGATGATGCCATGTCTCGCGGCTCTGTGCACTATTTTGGGGCTGAGCTGCCTGCCAGCAGCCTCACT GAAGCCAAGCCCTTCACTGTAGGGGACAACCAGACCTACAGTGGCTACTGGAACCCGCCACTGGAGCCCAAGAAGGCCT ATCTCATCTACTTTCAGGCCATGAGCAACCTTAAAGGGGAAACCCGGCTCAACTGTATCCGCATTGCCCGCAAAGCTGC CTGCAAAGAGAGCAAACGGCCTCTGGAGGTGTCTCAGCACTCGGAGGAGATGGGGCTGATCCTGGGAATCTGTGCTGGT GGGCTCGTCGTCCTCATTATCCTGCTGGGAGCCATCATTGTTGTCATTCGGAAAGGCAAACCTGTCAACATGACCAAAG CAACAATTAATTACCGCCACGAGAAGACACACATGATGAGTGCCATCGACCGGAGCTTCACGGACCAGAGCACGCTGCA GGAGGATGAGAGGCTGGGGCTGTCCTTCATGGACACCCACAACTACAGCAACCGTGGTGACCAGCGCAGCAGTGTGGTC AATGAGTCCAGCAGCCTGCTGGGGGGATCTCCTCGCCGCCAGTGTGGCCGCAAAGGGTCCCCGTATCACACTGGGCAGC TGCACCCCGCCGTGCGCGTAGCAGATCTCCTCCAACACATCAACCAGATGAAGACAGCAGAAGGCTACGGCTTCAAGCA GGAGTATGAGAGCTTCTTTGAAGGCTGGGATGCTTCAAAGAAGAAAGACAAGACCAAAGGGAGACAGGATCACGTGTCG ACGTATGACCGCCACCGTGTGAAGCTCCATCCACTGCTGGGCGATCCCAACTCGGATTACATCAACGCCAACTACATTG ATGGTTATCACAGGTCCAACCACTTCATCGCCACCCAAGGTCCTAAGCAGGAGATGGTGTACGACTTCTGGCGCATGGT GTGGCAGGAGCACTGTTCCAGCATCGTGATGATAACCAAGCTGGTGGAAGTGGGCCGGGTGAAATGCTCCAAATATTGG CCGGATGACTCGGAGATGTATGGGGACATCAAGATCACCTTGGTGAAGTCAGAGATGCTGGCAGAGTACGCCGTGCGGA CCTTTGCTCTCGAGAGGCGAGGTTACTCAGCCCGGCACGAAGTGAAGCAGTTCCACTTCACATCCTGGCCTGAGCACGG CGTCCCCTACCACGCCACGGGGCTGCTGGCCTTCATCCGCCGTGTGAAGGCATCCACACCACCCGATGCTGGCCCCATC GTCATCCACTGCAGTGCTGGCACGGGGAGGACCGGCTGCTACATCGTTCTGGATGTTATGCTGGACATGGCCGAGTGTG AGGGTGTTGTGGACATCTACAACTGTGTGAAGACGCTGTGCTCACGGAGGATCAACATGATACAGACAGAGGAGCAGTA CATCTTCATCCACGATGCCATCCTGGAAGCCTGCCTGTGTGGTGAAACCAGCATCCCTGCCAGCGAGTTCAAGCCCACC TACAAGGAGATGGTGAGGATTGAGCCGCAGAGCAATTCCTCACAGCTGCGGGAGGAGTTCCAGACCTTGAACTCGGTGA CTCCCCACCTGGATGTGGAAGAGTGCAGCATCGCCCTCCTGCCCCGCAACCGGGAGAGGAACCGCAGCATGGACGTCCT GCCGCCGGACCGATGCCTTCCCTTCCTCATCTCCGTGGATGGAGACAGCAACAACTACATCAACGCGGCCTTAACCGAT AGCTACACTAAGAGTGCTGCCTTCATTGTCACCCTGCACCCGCTGCAGAACACCACCACCGACTTCTGGAGGTTGGTGT ATGACTATGGCTGCACCTCCATCGTTATGCTCAACCAGCTGAACCAGTCCAACTCCGCCTGGCCCTGCCTTCAGTACTG GCCTGAGCCTGGGCTCCAGCACTACGGCCCCATGGAGGTGGAGTACGTGTCAGGAGCAGCAGATGAGGACATCGTGTCC CGTCTCTTCCGAGTGCAGAACATAACCCGGCTGCAGGAGGGGCACCTGATGGTCCGGCACTTCCAGTACCTGCGGTGGT CAGCGTACAGAGACACCCCAGACTCCAAGAAGTCCTTCCTGCACCTCCTGGCCCAAGTGGAGAGGTGGCAGAAGGAGAG CGGCGATGGCAGGACTGTGGTGCACTGCTTGAATGGGGGTGGCCGGAGTGGCACCTACTGTGCCTCCACCATGATCCTG GAGATGATCAAGTGTCACAACATGGCAGATATCTTCTATGCTGCGAAGACCCTCCGTAACTACAAGCCAAATATGGTGG AGACCTTGGAGCAGTATCACTTCTGCTACGACATAGCACTGGAATACTTGGAGTCCCTGGAGACCAGATAGCACCTCGC CAGGAGGGCGAAGGCAGAGGTTTGCTTAGGGTTTGTGCCAAACTCGCGTTTTTGCACTTGGACGTTGCGTTAGTGCTGA AGGTGAGGAGGGGGAAACAGCAAAGGACCACACACAGACACAAATCGGGAGCAACAAAAGGACGTGGGGAGGTGCTGCC TGTTCTCCATCCTCTGCTCTCCGCCTTCCCTCCCACTGCTCCAAGTGCATGGCCATGGGTCGATGCTGCATCTCACCTC GTCCCATCCCTGCTGTGATGTGGAGTTGGTGAGCATGGGA
Citation	Aerne B, Stoker A, Ish-Horowicz D. Chick receptor tyrosine phosphatase Psi is dynamically expressed during somitogenesis. Gene Expr Patterns. 2003 Jun;3(3):325-9.
Copyright	Reprinted from Gene Expression Patterns, Volume 3, Issue 3, Birgit Aerne, Andrew Stoker, and David Ish-Horowicz, Chick receptor tyrosine phosphatase Ψ is dynamically expressed during somitogenesis, Pages 325-329, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_204492).

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Early Mesoderm
Head Process

7-12

stage 7

stage 8

stage 9

stage 12

Forebrain
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Renal
Somites
Spinal Cord

amniocardiac vesicle
head fold
neural fold
pronephros

13-18

stage 18

Dermatome
Hindbrain
Leg Mesenchyme
Lens
Limb Mesoderm
Midbrain
Myotome
Nasal Placcode/Nerve
Nephric Tubules
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Renal
Rhombomeres
Spinal Cord
Telencephalon
Wing Mesenchyme

mesonephros
r1

Entry 2

GEISHA Id	RPTPlambda.Badde.2005	Data Source	Publication
Complete cDNA Template Probe	show CTCATCAGCCGCACCAAGTGTGCAGAGCCCATGCGGGCCCCCAAAGGCCTGGCTTTCTCCGAGATCCAATCCAGGCAGC TGACACTGCAGTGGGAACCGCTGGGCTACAACCTGACCCGCTGCCACACCTACAGCGTCTCGCTGTGCTACCGCTACCT GGTGGGCAGCGGCCTCAACCAGACCTTCCGCGAGTGCGCCAAGATGGAGCGCAACGCCAACCGCTACACCATCAAAAAC CTGCTGCCCTACAGGAACATCCACGTCAAGCTCATCCTCTCCAACCCCGAGGGCCGCAAGGAGGGCAAGGAGGTGACGT TCCAGACGGATGAGGACGTGCCTGGTGGCATCGCCTCTGAGTCACTCACCTTCACCCCTCTGGAGGACATGATCTTTCT GAAGTGGGAGGAACCGGTGGAGCCCAATGGCCTCATCACGCAGTACGAGATCAGCTACCAAAGCATTGAGTCCTCTGAC CCAGCAGTCAACGTTCCCGGCCCGCGACGCACCGTCTCCAAGCTGCGCAATGAGACGTACCACGTCTTCTCCAACCTGC ACCCTGGCACCACCTACCTCTTCTCAGTGCGTGCCCGCACAGGCAAGGGCTTTGGCCAGACAGCGCTCACAGAGATCAC
Citation	Badde A, Bumsted-O'Brien KM, Schulte D. Chick receptor protein tyrosine phosphatase lambda/psi (cRPTPlambda/cRPTPpsi) is dynamically expressed at the midbrain-hindbrain boundary and in the embryonic neural retina. Gene Expr Patterns. 2005 Aug;5(6):786-91.
Copyright	Copyright © 2005 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204492).