GEISHA - A Chicken Embryo Gene Expression Database
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FAT1
FAT atypical cadherin 1

Gene
Official SymbolFAT1
Official Full NameFAT atypical cadherin 1
CGNC ID10185
also known asFAT, protocadherin Fat 1|FAT tumor suppressor homolog 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_420680
PolypeptideXP_420680
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.50353
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly40191FBgn0261574
Human2195ENSG00000083857MIM:600976
Mouse14107ENSMUSG00000070047All phenotypic alleles (2):Targeted, other(1) Gene trapped(1) MGI:109168
Xenopus100489070920278
Zebrafish406172ENSDARG00000017591ZDB-GENE-050425-1, ZDB-GENE-130530-563ZFIN:ZDB-GENE-050425-1, ZFIN:ZDB-GENE-130530-563
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395168
Ensembl GeneENSGALG00000013579
KEGGgga:395168

Entry 1

GEISHA IdFAT1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCAATGTGAAGAAACTGGTGTTGCC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGAATACAGAGAACCGTGGAGGGTGcDNA Template Length1094
Forward cDNA Template Probeshow
GTTCTCATTCCATCAACTACCTCAACCTCAACGGTAACACGGTAGAAGATAATGGAAATGGGGTTTTCCTTTGGTCCTT
GGCCCGCACAGTCAAATTATAAAGTTGTTTCTTTTCATAATCCAGTCTTTGTACAATACGTATTGCTCCACTTAGTTTA
TCAACATCAAAAGTGCCATCCCCACTGTCCAAAAGACTGTATCGTACTTGACTTGACTGGCCTACATCAGGATCATAGG
CTTCTAACCACGTGATAATTGTTCCTTCGGGAAGATCTTCTCGAATTTTCACATGATAATTTGAAGGAATAAACTTAGG
AGGATTATCATTAACATCTTCTATAGAGACTTTCAAAATAACTGTTGAAAATAACTGAGGTTCTTCGGTAGGTTGGTCC
CTAGCCTCTATTTTCAAGAAATAGATGTGTTGCTCTTCATGATCCAGAAGCCCTACAACTTTCACAACTCCTGTCACAG
CATTAATAGCAAACTTGTCAGTATCTGTAAGAAGAGAATATTTCACTTCTCCGTTAGCCCCTAAATCTTTATCAGTAGC
TTCAATTTGAATAATTTCACTGTCTAGCTCTTTGTTTTCACTCACTTCCACAAAATAGCTGTCTTGTAGAAACTCTGGT
GGGTTATCATTAGCATCCAAAATTCTTATATCTAGAAGGTGCCAGGCAGACTTCTGTGGTATTCCAAGATCATAGACAG
TAACATTCAGATTATATTTATCTTTTACTTCTCGGTCAAGTGGAGACAAAATTTTCAGCATTCCACTTTCCATATCAAC
AATGAAACTGCTGTCTTCATTACCTCCAGAGATAACATATACTAACTTTCCATTGAAGCCAGTATCAAGATCAGTAGCA
TTCATAAGTATTATGCTGGAGCCCACAGGTNGATCCTCTCTTACCTCAATACTACTGGGGAGAGTACTTCTAAACTGAG
GNGTATGCATATTCAAGGGAGTGAGTGTCAAAGAAAANCATCCTCAACTTCTCCACGACTGTGCAATTTATTTGCTNGT
AGGAGCTTCTCTGCAAGCATTTTGGCAACAC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 5
Epiblast
Unlabeled
 
7-12
stage 8
stage 8
stage 8
stage 8
stage 8
stage 9
stage 10
stage 12
Area Opaca
Extraembryonic
Forebrain
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Somites
 
13-18
stage 13
stage 16
stage 16
stage 16
stage 16
stage 16
Amnion
Ear/Otic Placode
Extraembryonic
Eye
Forebrain
Foregut
Head Mesenchyme
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Lung
Midbrain
Myotome
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Somites
Spinal Cord
Ventral mesentery
19-24
stage 21
stage 23
stage 23
stage 23
Foregut
Mesonephros
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Unlabeled
Wing Mesenchyme
 
25-27
stage 26
stage 27
stage 27
stage 27
stage 27
Allantois
Eye
Forebrain
Foregut
Gizzard
Hindbrain
Hindgut
Leg Mesenchyme
Mesonephros
Midbrain
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Tail
Wing Mesenchyme
 

Entry 2

GEISHA IdFAT1.Smith.2007Data SourcePublication
Reverse cDNA Template Probeshow
GCGGCTCGAGGGAAAATATACCTGGTGTTTGCCATGACAGCAAAACCGGACAGTGTCCTGCATCGGTGGGCTCTGCTGT
GACATTCAGTGGGAACAGTTATGTGAAATATCGTCTCATGGAAAATGAGAACAAAGAAGAAATGAAGTTGACAATGAGA
CTTAGAACTTACTCTGCTCATGCAGTTGTTATGTACGCTCGAGGGACAGACTACAGTATCTTAGAGATTCATCATGGAA
GGCTGCAATATAAATTTGATTGTGGCAGTGGACCTGGCATTGTCTCCGTTCAGAGCATTCAAATTAATGATGGCCAGTG
GCATTCAGTATCTCTTGAAGTAGATGGAAATTATGCACGACTTGTTCTGGACAGGGTGCATACAGCATCTGGTACTGCT
CCTGGTACGCTTAGGACACTGAACCTAGATAATCATGTGTTTTTTGGTGGTCATATTCGGCAACAAGGTACAAGACATG
GGAGGAGTCCTCAGGTTAGCAATGGTTTCAGAGGCTGCATGGATTCTATTGTACTTAATGGACAAGAGCTCCCCTTAAA
CAGCAAGCCACGAAATTATGCACACATGGAAGAATCTGTCGATGTGACTCCTGGATGCATACTTACTACCACAGAAGGT
TGTTCAAGCAACCCATGTCAGAATGGAGGCATCTGCAACGCCCTGTCAAATGGAGGTTACTACTGCAAGTGTGCTCCAT
TATTCATGGGAACTCACTGTGATGTAAGTGTCAACCCGTGGTGCTTCCAAATCCCTGCCCTTTATGNGAGGTACTTTCC
ATCCCAGTCAGTGATGCATTCATCTTGTCAATGCCGAGGACAGAACGCAGGGCAAAGGTGGCCACTGGGTCCTATTGCA
AAGACCATCCTTGGTAAAA
CitationSmith TG, Van Hateren N, Tickle C, Wilson SA. The expression of Fat-1 cadherin during chick limb development. Int J Dev Biol. 2007;51(2):173-6.
Copyright"Reprinted from Int. J. Dev. Biol., 51, Smith TG, Van Hateren N, Tickle C, Wilson SA, The expression of Fat-1 cadherin during chick limb development, 173-6, Copyright (2007), with permission from Copyright © 2007 UBC Press". All rights reserved.
CommentsAccording to authors, "The Fat-1 cadherin cDNA used to produce a DIG-labelled probe was obtained from the Chicken EST database, ChEST533a5 and sequence verified (ref). Not 1 and T3 enzymes were used to linearize the plasmid and transcribe the RNA probe." From information provided, the sequence below was obtained from BBSRC and NCBI (acc # BU381674).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
stage 17
stage 18
stage 18
stage 18
Diencephalon
Ear/Otic Placcode
Esophagus
Eye
Hindbrain
Intermediate Mesoderm
Leg
Limb Buds
Neural Plate/Tube
Pharyngeal Arches and Clefts
Renal
Somites
 
19-24
stage 20
stage 21
stage 21
stage 23
stage 24
stage 24
Ear/Otic Placode
Esophagus
Eye
Forebrain
Gizzard
Leg
Limb Buds
Pharyngeal Arches and Clefts
Telencephalon
Wing Mesenchyme
 
25-28
stage 26
stage 26
stage 26
stage 27
stage 27
stage 27
stage 28
stage 28
stage 28
Duodenum
Eye
Gizzard
Gut
Heart
Hindgut
Leg Mesenchyme
Telencephalon
Wing Mesenchyme
anus, perineal area
tendon primordia
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.50353

Mouse

EmageMGI:109168
EurexpressMGI:109168
MGI GXDMGI:109168

Frog

Xenbase920278

Fruit Fly

BDGPFBgn0261574

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050425-1, ZDB-GENE-130530-563
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