Geisha

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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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TF
transferrin (ovotransferrin)

Gene

Official Symbol	TF
Official Full Name	transferrin (ovotransferrin)
CGNC ID	49715
also known as	LTF, TFEW, conalbumin, ovotransferrin\|allergen Gal d III\|lactotransferrin\|ovotransferrin BB type\|ovotransferrin BC type\|ovotransferrin CC type\|serum transferrin, Ovotransferrin precursor, Conalbumin, Allergen Gal d 3, Gal d III, Serum transferrin
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205304
Polypeptide	NP_990635
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.2551

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4057	ENSG00000012223		MIM:150210
Mouse	17002	ENSMUSG00000032496	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:96837
Xenopus
Zebrafish

Gene Ontology

Molecular Function	ferric iron binding
Biological Process	acute-phase response, cellular iron ion homeostasis, iron ion transport, response to lipopolysaccharide
Cellular Component	extracellular matrix, extracellular space

Links to other databases

Entrez Gene	396241
Ensembl Gene	ENSGALG00000006453
KEGG	gga:396241

Entry 1

GEISHA Id	Ovotransferrin.Yanai.2005	Data Source	Publication
Complete cDNA Template Probe	show ATCACAGACCCAGAGGGGACGGTCTGTGACCAACACCGCTGCTCCCCCTCCTCAACACCCAGCTCCCTGCCCCAACATG AAGCTCATCCTCTGCACCGTGCTGTCCTTGGGGATAGCGGCTGTGTGTTTCGCCGCTCCCCCCAAGTCAGTCATCAGAT GGTGCACCATATCCTCTCCAGAAGAGAAGAAATGCAACAACCTCAGGGACCTCACACAACAAGAGAGGATTTCCTTGAC CTGTGTGCAGAAAGCAACGTACCTTGACTGCATTAAAGCCATTGCGAATAATGAGGCAGATGCCATTAGCTTGGACGGC GGTCAAGTGTTTGAGGCAGGCCTTGCCCCATACAAGCTGAAGCCCATTGCTGCTGAGATTTATGAACATACTGAAGGCT CCACAACCAGCTACTATGCTGTGGCCGTTGTGAAAAAAGGAACCGAATTCACCGTGAACGACTTGCAGGGCAAGAACTC CTGCCACACGGGGCTGGGCAGGTCTGCGGGCTGGAACATCCCCATTGGGACACTCCTCCACTGGGGGGCCATTGAGTGG GAAGGCATAGAATCGGGCTCAGTGGAACAAGCGGTGGCCAAGTTTTTCTCTGCCAGCTGCGTGCCCGGTGCCACCATCG AGCAAAAACTGTGCCGTCAGTGCAAAGGAGACCCCAAAACCAAGTGTGCCCGCAATGCACCTTATTCTGGATATTCTGG AGCTTTCCATTGTTTGAAAGATGGAAAAGGAGACGTGGCTTTTGTGAAGCACACAACTGTTAATGAAAATGCCCCGGAT CTGAATGATGAGTATGAGCTGCTGTGCCTGGATGGCAGCCGGCAGCCTGTGGACAACTACAAGACCTGTAACTGGGCCA GAGTGGCTGCTCACGCCGTCGTGGCTCGGGATGACAACAAGGTTGAAGATATCTGGAGCTTCCTCTCAAAAGCACAGAG TGACTTTGGCGTGGACACCAAGAGTGACTTCCACCTCTTTGGGCCACCTGGAAAGAAGGACCCGGTCCTCAAAGACTTC CTTTTCAAAGACTCTGCCATAATGCTGAAGCGCGTCCCCTCGCTGATGGATTCCCAGCTCTACCTGGGCTTTGAGTACT ACAGTGCCATCCAGAGCATGCGGAAAGATCAGCTGACTCCCAGCCCCAGAGAAAACAGGATCCAATGGTGTGCAGTAGG CAAGGATGAGAAGAGCAAGTGTGACCGCTGGAGTGTGGTGAGCAACGGGGACGTGGAGTGCACCGTGGTAGACGAGACA AAGGACTGCATCATTAAGATCATGAAAGGTGAAGCAGATGCTGTTGCCCTTGATGGAGGTCTGGTCTATACTGCTGGTG TCTGTGGCCTGGTGCCAGTGATGGCAGAACGATATGACGATGAAAGCCAATGCAGCAAAACAGATGAACGACCAGCATC ATACTTTGCTGTGGCTGTCGCGAGGAAAGACAGCAACGTCAACTGGAACAATCTGAAGGGCAAGAAATCGTGCCACACC GCTGTGGGGAGGACTGCTGGCTGGGTCATCCCCATGGGCTTGATTCACAACAGAACAGGGACCTGCAATTTCGATGAAT ACTTCAGCGAGGGTTGTGCTCCTGGATCCCCTCCTAACTCCCGCCTCTGCCAGCTGTGCCAGGGCTCAGGGGGAATCCC ACCGGAGAAGTGCGTCGCCAGCAGCCATGAGAAATACTTTGGATATACCGGAGCTTTACGGTGTCTGGTCGAGAAGGGT GATGTGGCCTTTATTCAGCATTCCACCGTTGAGGAAAACACTGGCGGCAAAAACAAAGCTGATTGGGCCAAGAATCTGC AAATGGATGACTTTGAGTTGCTGTGCACCGACGGGAGGCGGGCAAACGTCATGGATTACAGGGAATGCAACCTGGCTGA AGTTCCTACCCACGCTGTGGTCGTGCGCCCGGAGAAAGCAAACAAAATCCGTGATCTGCTGGAGAGACAGGAGAAACGG TTTGGAGTAAATGGAAGCGAGAAAAGCAAGTTCATGATGTTTGAGTCTCAAAACAAAGATCTTCTGTTTAAAGACTTAA CCAAGTGCCTGTTTAAAGTCCGAGAAGGAACAACATACAAGGAGTTCCTTGGAGATAAATTTTATACTGTGATTTCCAA CCTCAAAACCTGCAACCCATCAGATATCCTCCAGATGTGCAGCTTCCTTGAGGGCAAGTAAAGGGAGGGAAGGGCCCTT CTGAAGGGGGAGGAAACTTCGCGCCATGACTCCTCTCGTGCCCCCCGCACGGAACACTGATGTGCAGAGGGCCCTCTGC CATTGCTGCTTCCCCTGCCCTTCCTCGTCACTCTGAATGTGGCTTCTTCGCTACTGCCACAGCAAGAAATAAAATCTCA ACATCT
Citation	Yanai M, Tatsumi N, Endo F, Yokouchi Y. Analysis of gene expression patterns in the developing chick liver. Dev Dyn. 2005 Jul;233(3):1116-22.
Copyright	Wiley-Liss, Inc. 2005

Stage

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Location (click to highlight)

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7-12

stage 12

Anterior Intestinal Portal
Notochord
Yolk Sack or Stalk

13-18

stage 17

Liver
Pancreas

19-24

stage 22

Anterior Intestinal Portal
Liver
Pancreas

25-30

stage 25

stage 30

Duodenum
Liver
Pancreas

cystic duct,

31-42

stage 37

stage 42

Liver
Pancreas

Entry 2

GEISHA Id	OVOTRANSFERRIN.Gentili.1994	Data Source	Publication
Complete cDNA Template Probe	show ATCACAGACCCAGAGGGGACGGTCTGTGACCAACACCGCTGCTCCCCCTCCTCAACACCCAGCTCCCTGCCCCAACATG AAGCTCATCCTCTGCACCGTGCTGTCCTTGGGGATAGCGGCTGTGTGTTTCGCCGCTCCCCCCAAGTCAGTCATCAGAT GGTGCACCATATCCTCTCCAGAAGAGAAGAAATGCAACAACCTCAGGGACCTCACACAACAAGAGAGGATTTCCTTGAC CTGTGTGCAGAAAGCAACGTACCTTGACTGCATTAAAGCCATTGCGAATAATGAGGCAGATGCCATTAGCTTGGACGGC GGTCAAGTGTTTGAGGCAGGCCTTGCCCCATACAAGCTGAAGCCCATTGCTGCTGAGATTTATGAACATACTGAAGGCT CCACAACCAGCTACTATGCTGTGGCCGTTGTGAAAAAAGGAACCGAATTCACCGTGAACGACTTGCAGGGCAAGAACTC CTGCCACACGGGGCTGGGCAGGTCTGCGGGCTGGAACATCCCCATTGGGACACTCCTCCACTGGGGGGCCATTGAGTGG GAAGGCATAGAATCGGGCTCAGTGGAACAAGCGGTGGCCAAGTTTTTCTCTGCCAGCTGCGTGCCCGGTGCCACCATCG AGCAAAAACTGTGCCGTCAGTGCAAAGGAGACCCCAAAACCAAGTGTGCCCGCAATGCACCTTATTCTGGATATTCTGG AGCTTTCCATTGTTTGAAAGATGGAAAAGGAGACGTGGCTTTTGTGAAGCACACAACTGTTAATGAAAATGCCCCGGAT CTGAATGATGAGTATGAGCTGCTGTGCCTGGATGGCAGCCGGCAGCCTGTGGACAACTACAAGACCTGTAACTGGGCCA GAGTGGCTGCTCACGCCGTCGTGGCTCGGGATGACAACAAGGTTGAAGATATCTGGAGCTTCCTCTCAAAAGCACAGAG TGACTTTGGCGTGGACACCAAGAGTGACTTCCACCTCTTTGGGCCACCTGGAAAGAAGGACCCGGTCCTCAAAGACTTC CTTTTCAAAGACTCTGCCATAATGCTGAAGCGCGTCCCCTCGCTGATGGATTCCCAGCTCTACCTGGGCTTTGAGTACT ACAGTGCCATCCAGAGCATGCGGAAAGATCAGCTGACTCCCAGCCCCAGAGAAAACAGGATCCAATGGTGTGCAGTAGG CAAGGATGAGAAGAGCAAGTGTGACCGCTGGAGTGTGGTGAGCAACGGGGACGTGGAGTGCACCGTGGTAGACGAGACA AAGGACTGCATCATTAAGATCATGAAAGGTGAAGCAGATGCTGTTGCCCTTGATGGAGGTCTGGTCTATACTGCTGGTG TCTGTGGCCTGGTGCCAGTGATGGCAGAACGATATGACGATGAAAGCCAATGCAGCAAAACAGATGAACGACCAGCATC ATACTTTGCTGTGGCTGTCGCGAGGAAAGACAGCAACGTCAACTGGAACAATCTGAAGGGCAAGAAATCGTGCCACACC GCTGTGGGGAGGACTGCTGGCTGGGTCATCCCCATGGGCTTGATTCACAACAGAACAGGGACCTGCAATTTCGATGAAT ACTTCAGCGAGGGTTGTGCTCCTGGATCCCCTCCTAACTCCCGCCTCTGCCAGCTGTGCCAGGGCTCAGGGGGAATCCC ACCGGAGAAGTGCGTCGCCAGCAGCCATGAGAAATACTTTGGATATACCGGAGCTTTACGGTGTCTGGTCGAGAAGGGT GATGTGGCCTTTATTCAGCATTCCACCGTTGAGGAAAACACTGGCGGCAAAAACAAAGCTGATTGGGCCAAGAATCTGC AAATGGATGACTTTGAGTTGCTGTGCACCGACGGGAGGCGGGCAAACGTCATGGATTACAGGGAATGCAACCTGGCTGA AGTTCCTACCCACGCTGTGGTCGTGCGCCCGGAGAAAGCAAACAAAATCCGTGATCTGCTGGAGAGACAGGAGAAACGG TTTGGAGTAAATGGAAGCGAGAAAAGCAAGTTCATGATGTTTGAGTCTCAAAACAAAGATCTTCTGTTTAAAGACTTAA CCAAGTGCCTGTTTAAAGTCCGAGAAGGAACAACATACAAGGAGTTCCTTGGAGATAAATTTTATACTGTGATTTCCAA CCTCAAAACCTGCAACCCATCAGATATCCTCCAGATGTGCAGCTTCCTTGAGGGCAAGTAAAGGGAGGGAAGGGCCCTT CTGAAGGGGGAGGAAACTTCGCGCCATGACTCCTCTCGTGCCCCCCGCACGGAACACTGATGTGCAGAGGGCCCTCTGC CATTGCTGCTTCCCCTGCCCTTCCTCGTCACTCTGAATGTGGCTTCTTCGCTACTGCCACAGCAAGAAATAAAATCTCA ACATCT
Citation	Gentili C, Doliana R, Bet P, Campanile G, Colombatti A, Cancedda FD, Cancedda R. Ovotransferrin and ovotransferrin receptor expression during chondrogenesis and endochondral bone formation in developing chick embryo. J Cell Biol. 1994 Feb;124(4):579-88.
Copyright	copyright The Rockefeller University Press
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # X02009.1).

Stage

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Location (click to highlight)

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31-39

stage 36

stage 39

Leg Bones

Data from NCBI Unigene EST Profile
Unigene ID: Gga.2551

Mouse

Emage
Eurexpress	MGI:96837
MGI GXD	MGI:96837

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN

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TFtransferrin (ovotransferrin)