GEISHA - A Chicken Embryo Gene Expression Database
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RXRG
retinoid X receptor gamma

Gene
Official SymbolRXRG
Official Full Nameretinoid X receptor gamma
CGNC ID49710
also known asretinoic acid receptor RXR-gamma|nuclear receptor subfamily 2 group B member 3, Retinoic acid receptor RXR-gamma, Retinoid X receptor gamma
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_205294
PolypeptideNP_990625
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6258ENSG00000143171MIM:180247
Mouse20183ENSMUSG00000015843All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1) MGI:98216
Xenopus779621, 496325, 100487877, 378685478492, 478717
Zebrafish436617, 30464ENSDARG00000004697ZDB-GENE-040718-34, ZDB-GENE-980526-36ZFIN:ZDB-GENE-040718-34, ZFIN:ZDB-GENE-980526-36
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, more...steroid hormone receptor activity, zinc ion binding
Biological Processtranscription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene396231
Ensembl GeneENSGALG00000003406
KEGGgga:396231

Entry 1

GEISHA IdRXRg.Cui.2003Data SourcePublication
Reverse cDNA Template Probeshow
ATCCTGGAAGCCGAGCTGGCAGTCGAACCCAAGACGGAGGCATACAGCGACGTGAACACGGAGAGCTCAACCAATGACC
CCGTCACCAACATCTGCCACGCTGCTGACAAGCAGCTCTTCACCCTCGTCGAGTGGGCCAAGCGCATCCCCCACTTCTC
CGACCTGACCCTGGAGGACCAAGTCATCCTCCTGCGGGCAGGCTGGAACGAGCTGCTCATCGCATCCTTCTCCCATCGC
TCCGTGTCGGTGCAGGATGGCATCCTGCTGGCCACAGGCTTGCATGTGCACCGCAGCAGTGCTCACAGTGCAGGCGTGG
GCTCCATCTTTGACAGAGTTTTGACAGAGCTGGTGTCCAAAATGAAGGACATGCAGATGGATAAGTCGGAGCTGGGGTG
CCTGCGAGCCATTGTCCTCTTCAACCCAGACGCCAAGGGCCTGTCCAGCCCCTCCGAAGTGGAGTCGCTGCGGGAAAAG
GTCTACGCCACGCTGGAAGCCTACACGAAGCAGAAGTACCCCGAGCAGCCGGGGCGGTTTGCCAAACTCCTCCTGCGCC
TGCCAGCACTACGGTCCATCGGGCTGAAGTGCCTGGAGCACCTCTTCTTCTTCAAGCTGATCGGGGACACCCCCATCGA
CACCTTCCTTATGGAGATGCTGGAGACACCCCTGCAGGTCACTTGAGGGTCCGCTCCCCCCCGCCATATCCCCACACAG
CTCCCACCCCTCCTCTCCGGGCTGCAAGAGCCGCCCTCCACCCTCTGCTCCTCTTTGGTGGGATTGTTGTGTCTTTGTA
CAGCTGTAAATCGTCCCCTCTAACCCTCCCGGTGGGTTGCGGACCCTCTGCCCAGCTAACCACACACCTCCCTGTACAG
ATAATTGCTTTAAATTATTTTTTCACTCTCAATAAAAGCCAACAACAACCGGAATTC
CitationCui, J, Michaille, JJ, Jiang, W, Zile, MH. Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. Dev Biol. 2003 Aug 15;260(2):496-511.
Copyright"Reprinted from Developmental Biology, 260, Cui, J, Michaille, JJ, Jiang, W, Zile, MH, Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. 496-511, Copyright (2003), with permission from Elsevier". Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsAntisense riboprobes were prepared from chicken RXRγ (nt 787–1713) [Rowe et al 1991].
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
stage 6
Area Opaca
Headfold
Comparison of several genes
7-10
stage 7
stage 7
stage 8
stage 8
stage 10
Endoderm
Forebrain
Headfold
Hindbrain
Midbrain
Neural Plate/Tube
Surface Ectoderm
Comparison of several genes

Entry 2

GEISHA IdRXRGAMMA.Wilson.2007Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GAATTCCGGTGAGAGGAGACGGTCGTGTTTTGAAAGGCGAGAGATGAACTGAAGATTAAACATGTATGGGAATTATCCT
CACTTCATTAAGTTTCCTGCGGGCTTCGGCAATTCCCCTGTTCATGCCAGCTCCACGTCTGTGAGCCCATCATCCAGCC
TGTCCGTGGGGAGCACGGTGGACGGACACCACAACTACCTCGAGGCCCCCACAAACGCCTCCCGGGCGCTGCCATCCCC
CATGAACACCATTGGGTCTCCAGTGAACGCGTTGGGCTCACCCTACAGGGTCATCGCATCCTCCATTGGCTCGCATCCC
GTTGCTCTGTCGTCCTCAGCCCCGGGCATGAATTTTGTGACCCACAGCCCACAGCCCAATGTGCTCAACAATGTCAGCA
GCTCGGAGGACATCAAGCCCTTGCCAGGTCTACCAGGGATTGGGAACATGAATTATCCATCCACAAGCCCAGGTTCTTT
AGCCAAACACATCTGTGCCATCTGTGGGGACAGGTCTTCAGGGAAGCACTATGGGGTGTACAGCTGCGAGGGCTGCAAG
GGCTTCTTTAAGAGGACCATCCGGAAAGACCTGATCTACACCTGCCGTGACAACAAGGACTGCCTCATCGACAAGCGCC
AGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTCGCCATGGGGATGAAGAGGGAAGCCGTGCAGGAGGAGAG
GCAGGGGAGCAGGGAGCGCAGTGAGAACGAAGCTGAATCCACGAGCGGCGGCAGCGAGGACATGCCTGTGGAGAGGATC
CTGGAAGCCGAGCTGGCAGTCGAACCCAAGACGGAGGCATACAGCGACGTGAACACGGAGAGCTCAACCAATGACCCCG
TCACCAACATCTGCCACGCTGCTGACAAGCAGCTCTTCACCCTCGTCGAGTGGGCCAAGCGCATCCCCCACTTCTCCGA
CCTGACCCTGGAGGACCAAGTCATCCTCCTGCGGGCAGGCTGGAACGAGCTGCTCATCGCATCCTTCTCCCATCGCTCC
GTGTCGGTGCAGGATGGCATCCTGCTGGCCACAGGCTTGCATGTGCACCGCAGCAGTGCTCACAGTGCAGGCGTGGGCT
CCATCTTTGACAGAGTTTTGACAGAGCTGGTGTCCAAAATGAAGGACATGCAGATGGATAAGTCGGAGCTGGGGTGCCT
GCGAGCCATTGTCCTCTTCAACCCAGACGCCAAGGGCCTGTCCAGCCCCTCCGAAGTGGAGTCGCTGCGGGAAAAGGTC
TACGCCACGCTGGAAGCCTACACGAAGCAGAAGTACCCCGAGCAGCCGGGGCGGTTTGCCAAACTCCTCCTGCGCCTGC
CAGCACTACGGTCCATCGGGCTGAAGTGCCTGGAGCACCTCTTCTTCTTCAAGCTGATCGGGGACACCCCCATCGACAC
CTTCCTTATGGAGATGCTGGAGACACCCCTGCAGGTCACTTGAGGGTCCGCTCCCCCCCGCCATATCCCCACACAGCTC
CCACCCCTCCTCTCCGGGCTGCAAGAGCCGCCCTCCACCCTCTGCTCCTCTTTGGTGGGATTGTTGTGTCTTTGTACAG
CTGTAAATCGTCCCCTCTAACCCTCCCGGTGGGTTGCGGACCCTCTGCCCAGCTAACCACACACCTCCCTGTACAGATA
ATTGCTTTAAATTATTTTTTCACTCTCAATAAAAGCCAACAACAACCGGAATTC
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205294
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
stage 26
Hindbrain
 

Entry 3

GEISHA IdRXRγ.Hoover.2000Data SourcePublication
Complete cDNA Template Probeshow
GGATCCTGGAAGCCGAGCTGGCAGTCGAACCCAAGACGGAGGCATACAGCGACGTGAACACGGAGAGCTCAACCAATGA
CCCCGTCACCAACATCTGCCACGCTGCTGACAAGCAGCTCTTCACCCTCGTCGAGTGGGCCAAGCGCATCCCCCACTTC
TCCGACCTGACCCTGGAGGACCAAGTCATCCTCCTGCGGGCAGGCTGGAACGAGCTGCTCATCGCATCCTTCTCCCATC
GCTCCGTGTCGGTGCAGGATGGCATCCTGCTGGCCACAGGCTTGCATGTGCACCGCAGCAGTGCTCACAGTGCAGGCGT
GGGCTCCATCTTTGACAGAGTTTTGACAGAGCTGGTGTCCAAAATGAAGGACATGCAGATGGATAAGTCGGAGCTGGGG
TGCCTGCGAGCCATTGTCCTCTTCAACCCAGACGCCAAGGGCCTGTCCAGCCCCTCCGAAGTGGAGTCGCTGCGGGAAA
AGGTCTACGCCACGCTGGAAGCCTACACGAAGCAGAAGTACCCCGAGCAGCCGGGGCGGTTTGCCAAACTCCTCCTGCG
CCTGCCAGCACTACGGTCCATCGGGCTGAAGTGCCTGGAGCACCTCTTCTTCTTCAAGCTGATCGGGGACACCCCCATC
GACACCTTCCTTATGGAGATGCTGGAGACACCCCTGCAGGTCACTTGAGGGTCCGCTCCCCCCCGCCATATCCCCACAC
AGCTCCCACCCCTCCTCTCCGGGCTGCAAGAGCCGCCCTCCACCCTCTGCTCCTCTTTGGTGGGATTGTTGTGTCTTTG
TACAGCTGTAAATCGTCCCCTCTAACCCTCCCGGTGGGTTGCGGACCCTCTGCCCAGCTAACCACACACCTCCCTGTAC
AGATAATTGCTTTAAATTATTTTTTCACTCTCAATAAAAGCCAACAACAACCGGAATTC
CitationHoover F, Kielland A, Glover JC. RXR gamma gene is expressed by discrete cell columns within the alar plate of the brainstem of the chicken embryo. J Comp Neurol. 2000 Jan 24;416(4):417-28.
CopyrightCopyright © 1999-2018 John Wiley & Sons, Inc.
CommentsThe complete cDNA template sequence was obtained from the information in the publication as described in Hoover et al.2000.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 12
stage 12
Cranial PNS
Neural Crest
Peripheral Nervous System
 
13-18
stage 16
stage 17
stage 17
stage 18
stage 18
Cranial Ganglia
Ear/Otic Placode
Eye
Neural Crest
Neural Plate/Tube
Peripheral Nervous System
Spinal Cord
optic tectum, cerebellar plate
trigeminal ganglion
19-24
stage 19
stage 19
stage 19
stage 19
stage 19
stage 19
stage 22
stage 22
Cranial Ganglia
Diencephalon
Ear/Otic Placode
Eye
Hindbrain
Neural Crest
Neural Plate/Tube
Peripheral Nervous System
Sensory Organs
optic tectum, cerebellar plate, trigeminal ganglion; acoustic/facial ganglia; otic vesicle
optic tectum; oculomotor nerve
optic tectum; trigeminal ganglion; otic vesicle
posterior optic tectum, cerebellar plate
trigeminal ganglion, alar plate, neuroepithelial, cerebellar plate
25-30
stage 26
stage 26
Hindbrain
Midbrain
mesencephalic sensory nucleus
spinal trigeminal nucleus
31-44
stage 44
stage 44
stage 44
stage 44
stage 44
  

Entry 4

GEISHA IdRXRγ.Hoover.1998Data SourcePublication
Complete cDNA Template Probeshow
GGATCCTGGAAGCCGAGCTGGCAGTCGAACCCAAGACGGAGGCATACAGCGACGTGAACACGGAGAGCTCAACCAATGA
CCCCGTCACCAACATCTGCCACGCTGCTGACAAGCAGCTCTTCACCCTCGTCGAGTGGGCCAAGCGCATCCCCCACTTC
TCCGACCTGACCCTGGAGGACCAAGTCATCCTCCTGCGGGCAGGCTGGAACGAGCTGCTCATCGCATCCTTCTCCCATC
GCTCCGTGTCGGTGCAGGATGGCATCCTGCTGGCCACAGGCTTGCATGTGCACCGCAGCAGTGCTCACAGTGCAGGCGT
GGGCTCCATCTTTGACAGAGTTTTGACAGAGCTGGTGTCCAAAATGAAGGACATGCAGATGGATAAGTCGGAGCTGGGG
TGCCTGCGAGCCATTGTCCTCTTCAACCCAGACGCCAAGGGCCTGTCCAGCCCCTCCGAAGTGGAGTCGCTGCGGGAAA
AGGTCTACGCCACGCTGGAAGCCTACACGAAGCAGAAGTACCCCGAGCAGCCGGGGCGGTTTGCCAAACTCCTCCTGCG
CCTGCCAGCACTACGGTCCATCGGGCTGAAGTGCCTGGAGCACCTCTTCTTCTTCAAGCTGATCGGGGACACCCCCATC
GACACCTTCCTTATGGAGATGCTGGAGACACCCCTGCAGGTCACTTGAGGGTCCGCTCCCCCCCGCCATATCCCCACAC
AGCTCCCACCCCTCCTCTCCGGGCTGCAAGAGCCGCCCTCCACCCTCTGCTCCTCTTTGGTGGGATTGTTGTGTCTTTG
TACAGCTGTAAATCGTCCCCTCTAACCCTCCCGGTGGGTTGCGGACCCTCTGCCCAGCTAACCACACACCTCCCTGTAC
AGATAATTGCTTTAAATTATTTTTTCACTCTCAATAAAAGCCAACAACAACCGGAATTC
CitationHoover F, Seleiro EA, Kielland A, Brickell PM, Glover JC. Retinoid X receptor gamma gene transcripts are expressed by a subset of early generated retinal cells and eventually restricted to photoreceptors. J Comp Neurol. 1998 Feb 9;391(2):204-13.
Copyrightcopyright @1998 WILEY-LISS, INC.
CommentsThe complete cDNA template sequence was obtained from the information in the publication as described in Hoover et al.1998.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
Unlabeled
 
19-24
stage 22
stage 24
Retina
 
25-30
stage 26
stage 26
stage 26
Retina
 
31-44
stage 34
stage 36
stage 44
stage 44
stage 44
Retina
2-week posthatch chicken

Mouse

EmageMGI:98216
MGI GXDMGI:98216

Frog

Xenbase478492, 478717

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040718-34, ZDB-GENE-980526-36
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