Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

SATB2
SATB homeobox 2

The human orthologue of this gene is associated
with the following human disease:

Cleft palate and mental retardation

Gene

Official Symbol	SATB2
Official Full Name	SATB homeobox 2
CGNC ID	6166
also known as	DNA-binding protein SATB2\|special AT-rich sequence binding protein
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001199110
Polypeptide	NP_001186039
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.32259

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	23314	ENSG00000119042	MIM:119540	MIM:608148
Mouse	212712	ENSMUSG00000038331	All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(4)	MGI:2679336
Xenopus	100494002			5822251
Zebrafish	563435	ENSDARG00000061885	ZDB-GENE-070912-212	ZFIN:ZDB-GENE-070912-212

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	424063
Ensembl Gene	ENSGALG00000008135
KEGG	gga:424063

Entry 1

GEISHA Id	SATB2.Sheehan-Rooney.2010	Data Source	Publication
Complete cDNA Template Probe	show CAGAGATGAGCTGAAGAGAGCCAGTGTATCTCAAGCTGTCTTTGCACGAGTAGCATTCAACCGCACACAGGGCTTGTTG TCTGAGATCCTGCGTAAAGAAGAAGACCCCAGGACAGCTTCCCAGTCCCTCCTGGTAAACTTAAGGGCAATGCAGAATT TCCTCAACTTGCCTGACTCGGAACGGGATCGAATCTATCAGGATGAGAGAGAGAGAAGCATGAACCCTAATGTGAGCAT GGTGTCTTCAGCAGCCAGCAGCCCAAGCTCCTCTAGAACTCCCCAGGCCAAAACCTCGACACCAACAACAGACCTCCCC ATTAAGGCGGACGGCGCCAACTTCAACATCACAGCTGCCATTTATGACGAGATCCAACAGGAGATGAAAAGGGCCAAGG TATCTCAAGCTCTGTTTGCCAAAGTGGCTGCCAATAAAAGTCAGGGCTGGCTGTGCGAGCTACTTCGCTGGAAAGAAAA CCCGAGTCCAGAAAACCGCACCCTCTGGGAGAACCTCTGCACCATTCGCCGTTCCTGAACCTTCCTCAGCACGAGAGGG ATGTGATCTATGAGGAGGAGTCCAGACATCACCACAGTGAGCGTATGCAGCATGTTTGTCCAGCTCACTCCTGAGCCTG TGCAGGTGCTGCACAGACAGCAGTCCCAGCCTGCAAAGG
Citation	Sheehan-Rooney K, Pálinkáová B, Eberhart JK, Dixon MJ. A cross-species analysis of Satb2 expression suggests deep conservation across vertebrate lineages. Dev Dyn. 2010 Dec;239(12):3481-91.
Copyright	© 2010 Wiley-Liss, Inc.
Comments	The sequence below was obtained from NCBI (GenBank Acc: BU378469) using the information provided in the publication.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Face Mesenchyme

gl, globular process; mx, maxillary process; md mandibular process

25-30

stage 27

stage 29

Face Mesenchyme
Limb Buds

gl, globular process;md, mandibular process; mx, maxillary process
lateral forelimb view
mc, Meckels cartilage; md, mandibular process; ps, palatal shelves
md, mandibular process; ps, palatal shelves
mx, maxillary process

31-36

stage 31

stage 34

stage 35

stage 36

Face Mesenchyme

mc, Meckels cartilage; md, mandibular process; ps, palatal shelves; t, tongue
md, mandibular process; t, tongue
ps, palatal shelves

Entry 2

GEISHA Id	SATB2.Brugmann.2010	Data Source	Publication
Complete cDNA Template Probe	show ATGGAGCGGAGGAGCGAGAGCCCCTGCCTGCGGGACAGCCCCGACAGAGGCAGCGGCAGCCCCGATGTCAAAGGGCCCC CCCCCGGGAAGGTGGCCAGGCTGGAGCAGAACGGCAGCCCCATGGGCACCCGCGGGAGGCCCAACGGCGCCGTCGCCAA ACCCGTGGGAGGTTTGATGATTCCAGTCTTTTGTGTGGTGGAGCAGTCGGATGCCTCTCTTGAATATGATAATCGAGAA GAGCATGCTGAGTTCGTTCTGGTTCGCAAAGATGTGCTCTTTAGCCAGCTGGTGGAGACAGCGCTCCTGGCTCTGGGGT ATTCCCACAGCTCTGCGGCTCAGGCACAAGGAATAATCAAGCTTGGGAGGTGGAATCCCCTCCCTCTCAGTTATGTGAC TGATGCACCAGATGCAACAGTAGCTGACATGCTACAAGATGTCTATCATGTTGTGACATTGAAAATCCAATTACAAAGT TGTTCCAAGTTGGAAGACTTGCCAGCAGAGCAGTGGAACCATGCCACAGTTCGCAATGCCTTAAAGGAACTGCTCAAAG AGATGAATCAGAGCACATTAGCCAAAGAATGCCCTCTTTCACAGAGTATGATTTCATCCATTGTAAATAGCACATACTA TGCCAATGTGTCAGCAACCAAGTGCCAGGAGTTTGGGAGATGGTACAAAAAGTACAAGAAGATTAAAGTGGAAAGAGTG GAAAGAGAAAACCTTTCAGACTATTGTGTTCTTGGTCAACGTCCCATGCACTTACCAAATATCAACCAACTGGCAACTT TGGGAAAAACTAACGAACAGTCTCCTCATGGCCAAATTCACCACAGTACTCCAATTCGAAACCAAGTGCCAACGATGCA GACAATGATAAACCCTGGGCTCCTGTCTCCTCAGCTCAGTCCACAACTGGTGAGGCAGCAGATAGCAATGGCCCATCTG ATAAACCAACAGATTGCCGTCAGCCGGCTATTGGCTCACCAGCACCCACAAGCTATCAACCAGCAGTTCTTGAATCATC CACCCATCCCTAGAGCTGTCAAACCAGAGCCATCAAATTCATCGGTGGAAGTCTCTCCAGATATTTACCAGCAAGTCAG AGATGAGCTGAAGAGAGCCAGTGTATCTCAAGCTGTCTTTGCACGAGTAGCATTCAACCGCACACAGGGCTTGTTGTCT GAGATCCTGCGTAAAGAAGAAGACCCCAGGACAGCTTCCCAGTCCCTCCTGGTAAACTTAAGGGCAATGCAGAATTTCC TCAACTTGCCTGACTCGGAACGGGATCGAATCTATCAGGATGAGAGAGAGAGAAGCATGAACCCTAATGTGAGCATGGT GTCTTCAGCAGCCAGCAGCCCAAGCTCCTCTAGAACTCCCCAGGCCAAAACCTCGACACCAACAACAGACCTCCCCATT AAGGCGGACGGCGCCAACGTCAACATCACAGCTGCCATTTATGACGAGATCCAACAGGAGATGAAAAGGGCCAAGGTAT CTCAAGCTCTGTTTGCCAAAGTGGCTGCCAATAAAAGTCAGGGCTGGCTGTGCGAGCTACTTCGCTGGAAAGAAAACCC GAGTCCAGAAAACCGCACCCTCTGGGAGAACCTCTGCACCATTCGCCGCTTCCTGAACCTTCCTCAGCACGAGAGGGAT GTGATCTATGAGGAGGAGTCCAGACATCACCACAGTGAGCGTATGCAGCATGTTGTCCAGCTCACTCCTGAGCCTGTGC AGGTGCTGCACAGACAGCAGTCCCAGCCTGCAAAGGAGAATTCCCCACCGAGAGAAGAGGCTCCTCCTCCACCCGCTGA GGACAGTTGCGCCAAAAAGCCCAGATCCCGCACCAAGATATCCCTGGAAGCTCTAGGTATCCTTCAAAGCTTTATCCAC GATGTAGGTCTCTACCCTGATCAGGAAGCCATTCATACCCTCTCTGCTCAGCTGGATCTCCCCAAACACACCATCATCA AATTTTTCCAGAACCAACGTTACCATGTAAAGCACCATGGGAAGCTAAAAGAGCATTTGGGAACAGTGGTTGATGTGGC AGAGTACAAAGATGAGGAGCTGCTGACAGAGTCGGAGGAGAACGACAGCGAGGAGGGCTCGGAGGAGATGTACAAAGTG GAGCCTGAGGAGGAAAACCCCGAGAAAAGCAAGGCAGCTCCAGCAGACATCGACCAGAGATAA
Citation	S.A. Brugmann, K.E. Powder, N.M. Young, L.H. Goodnough, S.M. Hahn, A.W. James, J.A. Helms, M. Lovett. Comparative gene expression analysis of avian embryonic facial structures reveals new candidates for human craniofacial disorders. Hum Mol Genet. 2010 March 1; 19(5): 920930.
Copyright	Copyright © The Author 2009. Published by Oxford University Press. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001199110.1 ).