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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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BHLHE40
basic helix-loop-helix family member e40

Gene

Official Symbol	BHLHE40
Official Full Name	basic helix-loop-helix family member e40
CGNC ID	6296
also known as	BHLHB2, class E basic helix-loop-helix protein 40\|basic helix-loop-helix domain containing, class B, 2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001277144
Polypeptide	NP_001264073
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.56020

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	8553	ENSG00000134107		MIM:604256
Mouse	20893	ENSMUSG00000030103	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:1097714
Xenopus	779502, 443665			486415
Zebrafish	324413	ENSDARG00000004060	ZDB-GENE-030131-3133	ZFIN:ZDB-GENE-030131-3133

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	416108
Ensembl Gene
KEGG	gga:416108

Entry 1

GEISHA Id	BHLHE40.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCCGTCATCCAAAGGACATTC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGATCCAGACCCTACAGACCCACATC	cDNA Template Length	916
Forward cDNA Template Probe	show CTAGGATGCCTCCAGGGTATTTTTCAAGCTTTGACACATGGCAGCTGACTGAGCCAACCCGTTCTGTGGGTGCAAAGAC GGGGGCGAGAAAGCATCGAGCTCTTTTCTTGTCCTTTTGGAAGCAACTCTGCACGGGCAAACCGGGCACCTCCTTCATC CTCCTGCACGCTCCCTGGCACAGAGGACAGGGCTGTGGCTCCCCGCACACCGTGAGCCGTGGCCCACACCTCCCTCCAG CCAATGCATGAAAGTGAAACGGTCTCAAACTGGAAGAAAAAAAAAAGAAACCACAAACCCGCCCCCCCCCCCCGGGCTT GTCCTTAGGATTCCCAGTTCCAGGGGGGGATTCCCTTTATGCCCCCCCGACTGGCCAAAAAATCCATTGGGGAACCAGA ATTGTCCCGGGAAAAGAAATTTTTGGGCCCACAGCTGGGGGGGGAAAAATTGTCCTGCCCCAAAAAAGTCGGGTACCCC ATAGACTGCTCGGGCCTGCTGCGGGTACTAAAGCGGATCCCACCCCTGAACATGGCCATTTCCCACTAAGGCACGGCAT GGGGTTTGGGAATCTTGAACTTTTTTTTTATTGCCCCCACTAGGGGGCGTTTTTCTTTTTTTGGGGTACCAAAAAACCC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 8

stage 11

Anterior Intestinal Portal
Extraembryonic
Extraembryonic Mesoderm
Forebrain
Hindbrain
Intermediate Mesoderm
Isthmus/MHB
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube

13-18

stage 14

stage 16

Eye
Isthmus/MHB
Pineal Gland

extraembryonic membrane false stain

19-24

stage 24

Eye
Midbrain
Pineal Gland
Renal
Spinal Cord
Spinal Ganglia and Nerves

Section taken between the limbs.

stage 25

Eye
Midbrain
Pineal Gland
Renal
Spinal Cord
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	BHLHE40.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CACTTGGCCACGGCTCACAGTGTGCGGGGAGCCACAGCCCTGTCCTCTGTGCCAGGAAGCGTGCAGGAGGATGAAGGAG GTGCCCGGCTTGGCCGTGCAGAGCTGCTTCCAAAAGGACAAGAAAAGAGCTCGATGCTTTCCGCCCCCCTCTCTGCACC CACAGAACGGGTTGGCTCAGTCAGCTGCCATGTGTCAAAGCTGTGAAAAAATACCCCGAGAGGCAGATGTGGGTCTGTA GGGTCTGGATGTCCCCAGTGGAAGGTATGGATGGCCCTGCTGCAGGGTACGGATGCCCTCTGTGGTACGGCGGGGGCTC TGAGCTGTAGGGTCTGGGTGATCCTGGTGGTACTTTGAGGGTTCTGAGCTGTAAGATATGGAGGTTCCCAGTGGAGGAT CTGGATGTTCCCAGTGGAGGGTCCGGGTGTCCCCATGGTGCCTTGGGCTGTAGGGTCTGGCTGTCCCCGATGGTACTTT GGGGGCTCAGCGCTCCCAGCCCGGCCGTGCATGGTCAGTGGTTCAGGCAGACTAGGATTTCTCTCCACACCTTTGCTGA TAGATATTATAATAAATAAAAGGTAGATGCTGCTTGGAGGCTTTACGTGGAGTACACCTAATGGATAACAAACCTGCTC CCAAAAA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.