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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXJ1
forkhead box J1

Gene

Official Symbol	FOXJ1
Official Full Name	forkhead box J1
CGNC ID	14612
also known as	forkhead box protein J1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001233326
Polypeptide	XP_001233327
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2302	ENSG00000129654	MIM:607154	MIM:602291
Mouse	15223	ENSMUSG00000034227	All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:1347474
Xenopus	493505, 734957, 496834, 399038, 399039			919737, 853647
Zebrafish	767737, 494105	ENSDARG00000059545, ENSDARG00000088290	ZDB-GENE-060929-1178, ZDB-GENE-041212-76	ZFIN:ZDB-GENE-060929-1178, ZFIN:ZDB-GENE-041212-76

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	770009
Ensembl Gene
KEGG	gga:770009

Entry 1

GEISHA Id	FOXJ1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-TGGCAATGAGTACCTGTCCG-3’
Reverse cDNA Template Primer	5’-ATTAACCCTCACTAAAGGGAACGGTGCTGACATTGACG-3’	cDNA Template Length	886
Complete cDNA Template Probe	show TGGCAATGAGTACCTGTCCGGCTCTGTCAGCATGGAGCAGCTGTTTGAGCTCGGTGACACCTCGCTGCCCGCAGACGTC AACGAATGGAGCGCTGTGGGATCCTTTCTATAAGCAAAGGACCGAACCAAACCCATGGGGGCTTTGGGAGGACGCTCCC TTTGTGCTGCTGGAACTTGCAATGGACAATATTTTCTACGGACAGACTCCCCCAGCAGCTTGATCAGCTTCATGGTAGG GTTTATTCATAGACACACCAATGGGGAGAACACAGTAACACAAAAAATTGCTTGAAATATCTTCAAAGGACACACCAGA AGCCCGAGGTCCACCGCTTTCCTCAAGAGAAGAGGTAGAACAGTACTTATTTTTTTACTTTTTCAGGAACAAAATGTAC ATTCCCACTTTTCCTTGCATGGAAATGGACACGGCATACAGTCCTCCTCTGCAGACCCAACAGACAAGATTCCTGGTGG CTTCGGACTCCATAGACGACGTGCAATCTTCTCACTCCTTCTTCTCTCTGTTCTTCTCTCTCTTTCTGTCCGGGTTCGT TTGTAGGTGTAGCTAATTAGTTAGCAGGCAAACAGAGTCCCCTCTGGATTCTCCAAGTTCAACCTCCCTCCTGACTTGT GCCTGGGGAAGAAGGAAAGATCCGTGCATTCAGTCTGCCTCTTTAGATGTTTTTATATAATCTATTATATATTATATAT TCAAAGAAACCTATATTTTTAGCATTAGGACCTCTTTTCAGAGTGGGGTAGGGGAAATGTAGGTTGGGGTTGTTTTGTA CTTGGGCTTATGTTAGTCGTTCTGCAAACCAAGACCTGCACAGTGGCTTTGGTCAGCATTGGGTCACCCAACTCCACGT CAATGTCAGCACCGTTC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Unlabeled

13-18

stage 17

Forebrain
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts

19-24

stage 19

stage 20

Forebrain
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Unlabeled
Wing Mesenchyme

stage 25

Forebrain
Head Mesenchyme
Hindbrain
Mesonephros
Midbrain
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	FOXJ1.Cruz.2010	Data Source	Publication
Complete cDNA Template Probe	show ATGGCTGAGGGCTGGCTGAGCCTGCGGGCGGCCGAGGGGCAGCAGGGCGGCATGGGCGACTCGAGCAACCTGGACGACA GCCTGACCAGCCTGCAGTGGCTGCAGGAGTTCTCCATCATCAACGCCAACGTGGGCAAATCCTCCTCGTGCCCCAGCGG CCCCGATCCTCACGATTGCCACCACGTCCCCGGCTTCGCCGCTCCGTGCTCGCCCCTGGCGGCCGACCCGGCGTGTATG GGGATGCCCCACACCCCGGGCAAACCCACCTCCTCCTCCACCTCGAGGACGGCACACCCGGCTTTGCAGGCTCAGCCGC CCGAGGACATCGACTACAAGACCAACCCGCACGTGAAGCCGCCCTACTCCTACGCCACTCTCATCTGCATGGCGATGGA AGCCAGCAAGAAGACCAAAATCACCCTGTCCGCCATCTACAAGTGGATTACCGACAACTTCTGCTACTTCCGACACGCC GACCCCACCTGGCAGAACTCCATCCGACACAACCTGTCCTTGAACAAGTGCTTCATCAAAGTGCCCCGCGAGAAGGACG AGCCGGGGAAAGGCGGCTTTTGGAAGATCGACCCTCAGTACGCCGACCGGCTGATGAACGGGGCCTTCAAGAAGCGGCG GATGCCCCCGGTGCAGATCCACCCGGCCTTCACCAACAGGGCCCAGCACCAAGCGTGCGGCGTCGGCGGGCCGCTGCCT TCCAGCTGCGCCAACAGCAACGTCCTCAACGTCAACACGGAGTCCCAGCAGCTGCTGAAGGAGTTTGAAGAGGTCACCG GAGAGCAGAGTTGGGATGGGAAGAGCGGCCGCAAGCGCAAGCAGCCCTTACCCAAACGCACGGCCAAGGCGGCCCGGCT GCTCAACACGGCCCTGCTCACCCAGGAGGAGCAGACCGAGCTGGGCTCGCTGAAGGGCAACTTCGACTGGGAGGTTGTC TTTGACACCAACCTCAATGGAGATTTCACCACGTTTGAGGAGCTGGAGCTCACGCCGCCCATCAGCCCCATTGGGCGTG ATGTTGACCTGACGGGCCACGGATACCACGACGGTGCACAGGAGTGGTGCGTGGCCGGGCCCGAGCAGCCCCTCACCGA GCCCAACCACAACAACCTGGACTTTGACGAGACCTTCATGGCCACCTCCTTCCTGCAGCACCCCTGGGATGACGATGGC AATGAGTACCTGTCCGGCTCTGTCAGCATGGAGCAGCTGTTTGAGCTCGGTGACACCTCGCTGCCCGCAGACGTCAACG AATGGAGCGCTGTGGGATCCTTTCTATAA
Citation	Cruz C, Ribes V, Kutejova E, Cayuso J, Lawson V, Norris D, Stevens J, Davey M, Blight K, Bangs F, Mynett A, Hirst E, Chung R, Balaskas N, Brody SL, Marti E, Briscoe J. Foxj1 regulates floor plate cilia architecture and modifies the response of cells to sonic hedgehog signalling. Development. 2010 Dec;137(24):4271-82.
Copyright	Copyright retained by the authors. Permission to reprint the images has been requested.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_001233326).