Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

HOXC10
homeobox C10

Gene

Official Symbol	HOXC10
Official Full Name	homeobox C10
CGNC ID	13664
also known as	homeobox protein Hox-C10\|Hox C10
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001233805
Polypeptide	XP_001233806
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.20677

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3226	ENSG00000180818		MIM:605560
Mouse	209448	ENSMUSG00000022484	All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1)	MGI:96192
Xenopus	100487723, 399206			486914
Zebrafish	30402		ZDB-GENE-990415-110	ZFIN:ZDB-GENE-990415-110

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	770471
Ensembl Gene
KEGG	gga:770471

Entry 1

GEISHA Id	HOXC10.1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TCCCGTCCATTCCCAGTCGTC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGCTCGTTTCCCCT CCCACAAC	cDNA Template Length
Forward cDNA Template Probe	show TTTTNCCCCGGATTTCCTTTAGGTAGTGAGCATGATCCCACTGCAACTTGAATGTACAGACACTTCTATGAGCCCCCTT TTTCGCCATTTTTATTACACAGGAGGCAGGCTAACACTAGGATATGAAAAGCAAACTTCGAGACGCACCTATTATCCTA AACATAAAAATGCATCGAGAAAGGTCCTTCTGCTTTTGTGCTGCACGTAAATAACTTAAAACATTTGACCGGGGCGGTT TTCAAGCCACCGCCTCCTTTATTTTACATAGAAACACGGATGCAATATATATCCTCATGCTCAGACCGCTGCATCTTCT CTCCCTACGAACTGCAAACACCCAAATGATGGAGGTCCTTTCCTTCCCGCGTACGCATTGCATTTATACCCAGGGGAAA AAAAAAATATATAATAAAATAAAATAACCCCCCCCAAAGGGCAAAGAGTTCCTCCTCTCTCCCCCCTCCTCCCCTTCTT GAACCGGGGCTCGCTCAGGTGAAATTAAAATGGGACGTCAGTTCCCGGATTCGGTTCTCTCTGTT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Primitive Streak

Low level expression.

4-6

stage 4

Epiblast
Primitive Streak

7-12

stage 8

stage 9

Anterior Intestinal Portal
Extraembryonic Mesoderm
Forebrain
Heart
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
Somites
extraembryonic ectoderm
extraembryonic endoderm

13-18

stage 17

stage 18

Leg
Somatic Mesoderm
Somites
Spinal Cord
Tail

19-24

stage 21

stage 23

Leg Mesenchyme
Somatic Mesoderm
Somites
Spinal Cord
Tail

stage 25

Leg Mesenchyme
Somatic Mesoderm
Somites
Spinal Cord
Tail

Entry 2

GEISHA Id	HOXC10.Hughes.2011	Data Source	Publication
Complete cDNA Template Probe	show CCTCTACGCCCAATCAGCCCTTCGGAAGCAGAGAAAGAGCTGAATAAAAACACTGACACCAGCACTGACAATTCTGACA ATGAAGCAAAAGAGGATATAAAGGCAGAAAACACTACAGGAAATTGGCTGACAGCAAAGAGCGGAAGAAAGAAAAGGTG TCCTTACACCAAGCACCAGACGCTGGAGCTGGAGAAGGAATTCTTGTTCAATATGTACTTGACCCGTGAGCGCCGCCTG GAGATTAGTAAGAGCATTAACCTGACAGACAGACAAGTCAAAATCTGGTTTCAGAACCGCAGGATGAAACTCAAGAAAA TGAACAGAGAGAACCGAATCCGCGAACTGACGTCCAATTTTAATTTCACCTGAGCGAGCCCCGGTGCAGGAGGGGGAGG AGGGGGGAGAGAGGAGGAGCTCTGTGCGCTTTGGGGGGGTTTATTTTATTTTATTATATATTTTTTTTTTCCCCTGGGT ATAAATGCAATGCGTACGCGGGAAGGAAAGGACCTCCATCATTTGGGTGTTTGCAGTTCGTAGGGAGAGAAGATGCAGC GGTCTGAGCATGAGGATATATATTGCATCCGTGTTTCTATGTAAAATAAAGGAGGCGGTGGCTTGAAAACCGCCCCGGT CAAATGTTTTAAGTTATTTACGTGCAGCACAAAAGCAGAAGGACCTTTCTCGATGCATTTTTATGTTTAGGATAATAGG TGCGTCTCGAAGTTTGCTTTTCATATCCTAGTGTTAGCCTGCCTCCTGTGTAATAAAAATGGCGAAAAATGGGGCTCAT AGAAGTGTCTGTACATTCAAGTTGCAGTGGGATCATGCTCACATCCTGTAGTGATGCGGTTTCTTCCAATGAAGTGATG CTATCTACCA
Citation	Hughes MW, Wu P, Jiang TX, Lin SJ, Dong CY, Li A, Hsieh FJ, Widelitz RB, Chuong CM. In search of the Golden Fleece: unraveling principles of morphogenesis by studying the integrative biology of skin appendages Integr Biol (Camb). 2011 Apr;3(4):388-407. Epub 2011 Mar 24.
Copyright	© Royal Society of Chemistry 2011
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_428107.2).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-29

stage 26

stage 29

Surface Ectoderm

skin

Entry 3

GEISHA Id	Hoxc-10.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show CCTGGCTGGAGTATTCCTCCTTAAAAACCCTCTCTGAAAATGTCATGTCCCAACAATGTGACTTCTAACTCGTTTTTGA TGGACTCGTTGGCCGGTACCTGTAGAGGGGAGAATTATTCCTCCAGCCAAGGGATGTACATGCAGCCTGGGAGCGATTT CAGCTGCGGAGTCATGAGGAACTGTGGAATTATCCCGTCTCTTTCCAAAAGGGACGAGGTGAATAGCGCTACCTTGTCT CTCAGCACCTATCCATCTTACCTTTCTCAGCTAGACACTTGGTGTGACCCCAAAAATACGTACAGGATCGAGCAACCTG TTGCAAGACAGCTCCCATCCTGCTCCTTCCCAACCAATGTCAAGGAAGAGAATGTTTGCTGTATGTATAACGCTGACAA AAGGGCTAAAAATGCCACAGAGGCAGCCCTCTACCCCAACCAAATGCCTGAGCCTTGCCTAAATGACCATGAAGTCCCC GTTCCTAGCTACTACCGAGCAAGCCAAGGTTACCCCTCCATGGAGAAGACGTCAAACTGCAGCAATCCAAATGAGTTTG AGGCAAGTTTTGAATCCAGGGCGAGCCTGAACCCAAGGAACGAGCATCTGGAACCAGCACCACCACCTCCTCCTCCTCC TCCTCCTCCGCCCCCGGTGGCTAAAGTGAGTTTCCCCGAAAACACAAAAACAGATAATACTCAGAACACATCCACGAAC GAAATTAAAACAGAAAAAAGCGCCCCAGCACCCAAAATCAGCCCTTCGGAAGCAGAGAAAGAGCTGAATAAAAACACTG ACACCAGCACTGACAATTCTGACAATGAAGCAAAAGAGGATATAAAGGCAGAAAACACTACAGGAAATTGGCTGACAGC AAAGAGCGGAAGAAAGAAAAGGTGTCCTTACACCAAGCACCAGACGCTGGAGCTGGAGAAGGAATTCTTGTTCAATATG TACTTGACCCGTGAGCGCCGCCTGGAGATTAGTAAGAGCATTAACCTGACAGACAGACAAGTCAAAATCTGGTTTCAGA ACCGCAGGATGAAACTCAAGAAAATGAACAGAGAGAACCGAATCCGCGAACTGACGTCCAATTTTAATTTCACCTGAGC GAGCCCCGGTGCAGGAGGGGGAGGAGGGGGGAGAGAGGAGGAGCTCTGTGCGCTTTGGGGGGGTTTATTTTATTTTATT ATATATTTTTTTTTTCCCCTGGGTATAAATGCAATGCGTACGCGGGAAGGAAAGGACCTCCATCATTTGGGTGTTTGCA GTTCGTAGGGAGAGAAGATGCAGCGGTCTGAGCATGAGGATATATATTGCATCCGTGTTTCTATGTAAAATAAAGGAGG CGGTGGCTTGAAAACCGCCCCGGTCAAATGTTTTAAGTTATTTACGTGCAGCACAAAAGCAGAAGGACCTTTCTCGATG CATTTTTATGTTTAGGATAATAGGTGCGTCTCGAAGTTTGCTTTTCATATCCTAGTGTTAGCCTGCCTCCTGTGTAATA AAAATGGCGAAAAATGGGGCTCATAGAAGTGTCTGTACATTCAAGTTGCAGTGGGATCATGCTCACATCCTGTAGTGAT GCGGTTTCTTCCAATGAAGTGATGCTATCTACCATATATTTAAGACAAAAGAAATAATAATT
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( NM_001305260).