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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PCDH18
protocadherin 18

Gene

Official Symbol	PCDH18
Official Full Name	protocadherin 18
CGNC ID	51739
also known as	protocadherin-18\|cadherin
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_420404
Polypeptide	XP_420404
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.55790

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	54510	ENSG00000189184		MIM:608287
Mouse	73173	ENSMUSG00000037892	All phenotypic alleles (1):Targeted, knock-out(1)	MGI:1920423
Xenopus	496568			486208
Zebrafish	562031, 572532	ENSDARG00000052494, ENSDARG00000089805	ZDB-GENE-080804-1, ZDB-GENE-000607-1	ZFIN:ZDB-GENE-080804-1, ZFIN:ZDB-GENE-000607-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	422438
Ensembl Gene	ENSGALG00000009732
KEGG	gga:422438

Entry 1

GEISHA Id	PCDH18.Lin.2012	Data Source	Publication
Complete cDNA Template Probe	show AGGGCGCTAATGGGAAGGTCGTGTACTCCTTTAGCAGTCATGTGTCTCCCAAAATTATGGAGACTTTCAGGATAGATTC GGAGAAAGGACATCTGACCCTCCTGAAGCAAGTGGACTATGAAATTACCAAGTCCTATGAAATTGATGCTCAGGCTCAA GACATGGGACCAAATTCTATTCCAGCTCACTGCAAAATTATAATTAAAATTGTGGATGTGAATGATAACAGACCCGAAA TTAGCTTAAATTTGATGTCCCCAGAAAAAGAAGAGACGGCTTACATTTCTGAGGGGTCCCCCCTGGACACGTTTGTTGC CCTGGTCAGGGTGCAGGACAAGGACTCGGGTGTAAACGGAGAGGTAGTTTGCAAGCTCCATGGTCATGGCCACTTTAAA CTGCAAAAGACTTACGAAAATAACTATTTAATCTTGACTAATGCCAGTCTAGATAGAGAAAAGAGATCTGAATACAGCT TGACTGTAATAGCAGAGGACAAGGGAACGCCAAGTCTCTCCACGGTAAAACACTTTACTGTCCAAATCAGTGATGAAAA TGACAACCCACCGCGCTTCCAGACAAACAGATACGAAGTAGTTATCTTAGAAAATAACTCTCCGGGAGCGTACATCACA TCCGTCACGGCCACAGACCCAGATCTAGGGGACAATGGGCAGGTTACCTACACTATACTGGAGACCTCTGTTTTGGGAA GTTCTATAACCACCTATGTGACCATTGATCCCTCCAATGGGGCAATCTACGCCTTGAGAACTTTTGACCATGAAGAGGT AAATCAGATTGTCTTTATGGTACAAGCCAGGGATGGAGGGAGCCAGCAACTTGTTAGTAACACCACAGTGGTACTAACC ATCATTGATGAAAATGACAATGCTCCTGTCATCGTGGGCCCAGCACTGCACAACAGCACGGCGGAAATCTCAATCCCTA AAGATGCTGGGATTGGCTTTCTTGTCACGAGGATAAGGGCTACAGATAGAGACTCTGGTATGAACTCTGAACTCAGCTG CTCCATAGCAGCTGACAAGGAAAACAGCATCTTTGTGATGGATCCCAAAACTTGTGACATCTCCATCAATGTGAGTGTA GAATCGGTTCCAGCTAAGCACTGGGAGTTTTATGTCATAGTCCAGGATAAAGGCAGTCCTCAGCTTAGTACTAAAGCGC TTCTGAAGTGTACAGTTTTTGAGTATGTTTATTCATTTTCAAGCACAGAAGCTACTTTGGTAAGCCAACCCTCTCTGGA TGTCTCGATGATAACAATTATATCCTTAGGATCAATATGTGCCGTTTTGCTGGTCATCATGGTTATCTTTGCTACGAGG TGTAATCGAGAGAAAAAGGACACCAGGTCCTACAACTGCCGTGTGGCAGAATCGACCTACCAGCACCACCCGAAGAGGC CCTCCAGACAGATCCACAAAGGGGACATCACATTGGTGCCAACAGTTAATGGCACGCTACCCATCCGATCCCACCACAG AGCTTCCCCGTCCTCATCCCCGACCCTGGAGAGAGGACAGATGAGCAGCCGGCAGAG
Citation	Lin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
Copyright	Copyright © 2011 Wiley Periodicals, Inc.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in the paper.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Dermomyotome
Sclerotome
Spinal Cord

19-24

stage 20

stage 24

Neural Crest
Sclerotome
Spinal Cord

Cdh7: green
Higher magnification of boxed area in C.
Pax3: red
Pcdh18: green
Pcdh18: red
me, meninges

25-30

stage 29

stage 30

Central Nervous System
Spinal Cord
Spinal Ganglia and Nerves

Cervical section of the spine.
Higher magnification of boxed area in E.
Higher magnification of boxed area in G.
Lumbar section of the spine.
Sacral section of the spine.
Thoracic section of the spine.
me, meninges

31-36

stage 34

stage 36

Blood Vessels
Spinal Cord

Higher magnification of boxed area in I.
Higher magnification of the boxed in K.
me, meninges
ve, vertebral arch
wm, white matter

Entry 2

GEISHA Id	PCDH18.Lin.2013	Data Source	Publication
Complete cDNA Template Probe	show AGGGCGCTAATGGGAAGGTCGTGTACTCCTTTAGCAGTCATGTGTCTCCCAAAATTATGGAGACTTTCAGGATAGATTC GGAGAAAGGACATCTGACCCTCCTGAAGCAAGTGGACTATGAAATTACCAAGTCCTATGAAATTGATGCTCAGGCTCAA GACATGGGACCAAATTCTATTCCAGCTCACTGCAAAATTATAATTAAAATTGTGGATGTGAATGATAACAGACCCGAAA TTAGCTTAAATTTGATGTCCCCAGAAAAAGAAGAGACGGCTTACATTTCTGAGGGGTCCCCCCTGGACACGTTTGTTGC CCTGGTCAGGGTGCAGGACAAGGACTCGGGTGTAAACGGAGAGGTAGTTTGCAAGCTCCATGGTCATGGCCACTTTAAA CTGCAAAAGACTTACGAAAATAACTATTTAATCTTGACTAATGCCAGTCTAGATAGAGAAAAGAGATCTGAATACAGCT TGACTGTAATAGCAGAGGACAAGGGAACGCCAAGTCTCTCCACGGTAAAACACTTTACTGTCCAAATCAGTGATGAAAA TGACAACCCACCGCGCTTCCAGACAAACAGATACGAAGTAGTTATCTTAGAAAATAACTCTCCGGGAGCGTACATCACA TCCGTCACGGCCACAGACCCAGATCTAGGGGACAATGGGCAGGTTACCTACACTATACTGGAGACCTCTGTTTTGGGAA GTTCTATAACCACCTATGTGACCATTGATCCCTCCAATGGGGCAATCTACGCCTTGAGAACTTTTGACCATGAAGAGGT AAATCAGATTGTCTTTATGGTACAAGCCAGGGATGGAGGGAGCCAGCAACTTGTTAGTAACACCACAGTGGTACTAACC ATCATTGATGAAAATGACAATGCTCCTGTCATCGTGGGCCCAGCACTGCACAACAGCACGGCGGAAATCTCAATCCCTA AAGATGCTGGGATTGGCTTTCTTGTCACGAGGATAAGGGCTACAGATAGAGACTCTGGTATGAACTCTGAACTCAGCTG CTCCATAGCAGCTGACAAGGAAAACAGCATCTTTGTGATGGATCCCAAAACTTGTGACATCTCCATCAATGTGAGTGTA GAATCGGTTCCAGCTAAGCACTGGGAGTTTTATGTCATAGTCCAGGATAAAGGCAGTCCTCAGCTTAGTACTAAAGCGC TTCTGAAGTGTACAGTTTTTGAGTATGTTTATTCATTTTCAAGCACAGAAGCTACTTTGGTAAGCCAACCCTCTCTGGA TGTCTCGATGATAACAATTATATCCTTAGGATCAATATGTGCCGTTTTGCTGGTCATCATGGTTATCTTTGCTACGAGG TGTAATCGAGAGAAAAAGGACACCAGGTCCTACAACTGCCGTGTGGCAGAATCGACCTACCAGCACCACCCGAAGAGGC CCTCCAGACAGATCCACAAAGGGGACATCACATTGGTGCCAACAGTTAATGGCACGCTACCCATCCGATCCCACCACAG AGCTTCCCCGTCCTCATCCCCGACCCTGGAGAGAGGACAGATGAGCAGCCGGCAGAG
Citation	Lin J, Wang C, Redies C. Expression of multiple delta-protocadherins during feather bud formation. Gene Expr Patterns. 2013 Mar-Apr;13(3-4):57-65. Epub 2013 Jan 11.. DIO: 10.1016/j.gep.2013.01.001.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Lin et al. 2013.