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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PCDH9
protocadherin 9

Gene

Official Symbol	PCDH9
Official Full Name	protocadherin 9
CGNC ID	12691
also known as	protocadherin-9, protocadherin-9
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001231263
Polypeptide	XP_001231264
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3348

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	5101	ENSG00000184226		MIM:603581
Mouse	211712		All phenotypic alleles (1):Targeted, knock-out(1)	MGI:1306801
Xenopus	100489504			980875
Zebrafish	100004118		ZDB-GENE-091015-1	ZFIN:ZDB-GENE-091015-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418800
Ensembl Gene
KEGG	gga:418800

Entry 1

GEISHA Id	PCDH9.Lin.2012	Data Source	Publication
Complete cDNA Template Probe	show TGCCCCTGCGACCAAAAGATTTTTTGCTTTAAACAACACCACAGGGCTGATCACGGTTCAGAGGTCCTTAGATCGGGAA GAGACTGCTATTCACAAAGTGACAGTGCTGGCTAGTGATGGCAGCTCTACACCAGCTCGGGCAACTGTGACCATCAATG TCACTGATGTAAACGATAACCCTCCGAACATAGACCTCAGGTACATAATAAGTCCCATCAATGGCACAGTGTACTTATC TGAGAAAGATCCTGTCAATACAAAGATTGCCCTAATTACGGTTTCAGATAAGGATACTGATGTGAATGGCAAAGTGATC TGTTTCATTGAGAGAGAGGTCCCCTTCCACCTCAAGGCAGTTTATGACAACCAGTATTTGTTAGAGACCTCTTCCTTGT TGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTTGCTTCTGATTCTGGCAAGCCCAGTTTGAACCAGACTGC CCTGGTAAGAGTTAAGCTGGAGGATGAAAATGACAACCCTCCGATTTTCAGCCAGCCTGTAATTGAGCTGTCAGTTTCT GAAAACAACCGTCGTGGTCTATACTTAACAACTATTAGTGCCACAGATGAAGACAGTGGGAAAAATGCAGACATTGTTT ATCAGCTTGGCCCTAATGCCTCCTTTTTCGATCTGGATCGAAAGACGGGAGTTTTGACAGCCTCCAGAGTTTTTGACAG AGAAGAACAGGAGCGTTTCATTTTCACTGTTACAGCCCGTGACAATGGCACCCCTCCTTTGCAGAGTCAAGCAGCTGTA ATTGTTACTGTGTTGGATGAAAATGACAACAGTCCCAAATTTACTCATAATCATTTCCAGTTTTTTGTATCGGAGAACC TACCAAAGTATAGCACTGTGGGGGTGATCACGGTGACTGATGCAGATGCTGGGGAAAACAAAGCGGTGACTCTTTCCAT CCTCAATGACAATGACAACTTTGTGCTGGATCCCTTCTCTGGAGTTATAAAGTCCAATGTTTCTTTTGATCGAGAGCAG CAGAGCTCCTACACCTTTGATGTTAAGGCAGTTGATGGAGGACAGCCTCCTCGCTCTTCTACAGCGAAAGTGACCATAA ATGTCATGGATGTTAATGATAACAGTCCTGTTGTCATCTACCCACCTTCTAATACTTCTTTTAAGCTGGTGCCACTCTC AGCAATTCCAGGATCAGTGGTAGCAGAAGTGTTTGCAGTAGATATTGACACTGGAATGAACGCTGAACTGAAGTACACA ATAGTGAATGGAAATAACAAAGGTTTGTTTCGGATTGATCCAGTGACAGGTAACATCACTCTGGAAGAAAAACCGACTC CTAACGATGTGGGGCTGCATCGCTTAGTTGTCAACATAAGTGATTTGGGTTATCCCAAATCTTTGCATACTCTTGTGCT TGTTTTTTTGTATGTAAATGATACTGCTGGAAATGCCTCTTATATTTATGACTTGATACGCAGGACTATGGAAACGCCT CTGGACCGCAACATAGGAGACAGTAGCCAACCCTACCAAAACGAGGACTATCTCACAATCATGATTGCTATTGTGGCAG GTGCCATGGTTGTCATAGTGGTGATATTTGTCACTGTTCTCGTTCGCTGCCGGC
Citation	Lin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
Copyright	Copyright © 2011 Wiley Periodicals, Inc.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in the paper.

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Splanchnic Mesoderm

19-24

stage 20

stage 24

Spinal Cord
Spinal Ganglia and Nerves
Splanchnic Mesoderm

Higher magnification of boxed area in D.

25-30

stage 29

stage 30

Notochord
Spinal Cord
Spinal Ganglia and Nerves

Cervical sections of the spine.
Higher magnification of boxed area in E.
Higher magnification of boxed area in G.
Lumbar of the spine.
PC9: green fluorescence
Pc9 in green.
Sacral section of the spine.
Thoracic section of the spine.

31-36

stage 34

stage 36

Spinal Cord
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	PCDH9.Lin.2013	Data Source	Publication
Complete cDNA Template Probe	show TGCCCCTGCGACCAAAAGATTTTTTGCTTTAAACAACACCACAGGGCTGATCACGGTTCAGAGGTCCTTAGATCGGGAA GAGACTGCTATTCACAAAGTGACAGTGCTGGCTAGTGATGGCAGCTCTACACCAGCTCGGGCAACTGTGACCATCAATG TCACTGATGTAAACGATAACCCTCCGAACATAGACCTCAGGTACATAATAAGTCCCATCAATGGCACAGTGTACTTATC TGAGAAAGATCCTGTCAATACAAAGATTGCCCTAATTACGGTTTCAGATAAGGATACTGATGTGAATGGCAAAGTGATC TGTTTCATTGAGAGAGAGGTCCCCTTCCACCTCAAGGCAGTTTATGACAACCAGTATTTGTTAGAGACCTCTTCCTTGT TGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTTGCTTCTGATTCTGGCAAGCCCAGTTTGAACCAGACTGC CCTGGTAAGAGTTAAGCTGGAGGATGAAAATGACAACCCTCCGATTTTCAGCCAGCCTGTAATTGAGCTGTCAGTTTCT GAAAACAACCGTCGTGGTCTATACTTAACAACTATTAGTGCCACAGATGAAGACAGTGGGAAAAATGCAGACATTGTTT ATCAGCTTGGCCCTAATGCCTCCTTTTTCGATCTGGATCGAAAGACGGGAGTTTTGACAGCCTCCAGAGTTTTTGACAG AGAAGAACAGGAGCGTTTCATTTTCACTGTTACAGCCCGTGACAATGGCACCCCTCCTTTGCAGAGTCAAGCAGCTGTA ATTGTTACTGTGTTGGATGAAAATGACAACAGTCCCAAATTTACTCATAATCATTTCCAGTTTTTTGTATCGGAGAACC TACCAAAGTATAGCACTGTGGGGGTGATCACGGTGACTGATGCAGATGCTGGGGAAAACAAAGCGGTGACTCTTTCCAT CCTCAATGACAATGACAACTTTGTGCTGGATCCCTTCTCTGGAGTTATAAAGTCCAATGTTTCTTTTGATCGAGAGCAG CAGAGCTCCTACACCTTTGATGTTAAGGCAGTTGATGGAGGACAGCCTCCTCGCTCTTCTACAGCGAAAGTGACCATAA ATGTCATGGATGTTAATGATAACAGTCCTGTTGTCATCTACCCACCTTCTAATACTTCTTTTAAGCTGGTGCCACTCTC AGCAATTCCAGGATCAGTGGTAGCAGAAGTGTTTGCAGTAGATATTGACACTGGAATGAACGCTGAACTGAAGTACACA ATAGTGAATGGAAATAACAAAGGTTTGTTTCGGATTGATCCAGTGACAGGTAACATCACTCTGGAAGAAAAACCGACTC CTAACGATGTGGGGCTGCATCGCTTAGTTGTCAACATAAGTGATTTGGGTTATCCCAAATCTTTGCATACTCTTGTGCT TGTTTTTTTGTATGTAAATGATACTGCTGGAAATGCCTCTTATATTTATGACTTGATACGCAGGACTATGGAAACGCCT CTGGACCGCAACATAGGAGACAGTAGCCAACCCTACCAAAACGAGGACTATCTCACAATCATGATTGCTATTGTGGCAG GTGCCATGGTTGTCATAGTGGTGATATTTGTCACTGTTCTCGTTCGCTGCCGGC
Citation	Lin J, Wang C, Redies C. Expression of multiple delta-protocadherins during feather bud formation. Gene Expr Patterns. 2013 Mar-Apr;13(3-4):57-65. Epub 2013 Jan 11.. DIO: 10.1016/j.gep.2013.01.001.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Lin et al. 2013.