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A chicken embryo gene expression database

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SMARCA2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2

Gene

Official Symbol	SMARCA2
Official Full Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
CGNC ID	7728
also known as	BRM, probable global transcription activator SNF2L2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205139
Polypeptide	NP_990470

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	6595	ENSG00000080503		MIM:600014
Mouse	67155	ENSMUSG00000024921	All phenotypic alleles (1):Targeted, knock-out(1)	MGI:99603
Xenopus	734002, 403380			1013842
Zebrafish	334032	ENSDARG00000008904	ZDB-GENE-030131-5964	ZFIN:ZDB-GENE-030131-5964

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	396040
Ensembl Gene	ENSGALG00000010164
KEGG	gga:396040

Entry 1

GEISHA Id	SMARCA2.Olivera-Martinez.2014	Data Source	Publication
Complete cDNA Template Probe	show ATGTCCACGCCCACAGACCCTGGCGCCATGCCTCATCCTGGTCCTTCCCCCGGACCAGGACCTTCACCTGGACCGATTC TAGGACCTAGTCCAGGACCAGGGCCATCTCCTGGCTCAGTTCACAGCATGATGGGGCCAAGTCCTGGTCCACCCAGTGT CCCTCATCAGATGCCAGCAATGGGGGCTACTGATTATCCACAGGAAGGCATGCACCAAATGCATAAGTCCATTGATGGC TTGCATGAGAAAGGAATGGTTGAAGACGTTCATTGTGGCTCCATGAAGACTATGCGACCTCCTCACCCTGGGATGGGCC CACCTCAGAGTCCAATGGACCAGCACAGCCAAGGTTATATGTCTCCACACCCGTCTCCACTAGGAGCACCAGAGCATGT GTCCAGTCCAATGTCTGGAGGAGGTCCAACTCCACCCCAGATGACTCCCAGCCAACCGGGACCTATTATACCTGGGGAC CCACAAGTTATGAATCAACCCAACAGAGGTCCTTCCCCTTTCAGCCCTGTACAGCTGCACCAACTTCGGGCTCAGATTC TAGCATACAAAATGTTAGCTAGAGGTCAGCCTTTGCCAGAAAATCTCCAGCTTGCTGTTCAGGGGAAACGGACCCTTCC TGGTATTCAACAGCAGGAGCCTCCCAGTGCCTTCAACAGACAGTCTGGTATTGGGATGCATCCAATGAGTGGTGCTGCA ACTGGACCAGGGCCTGCTGCAGGAATACCTGGACATACAGCTGCCATTACCTCTAAAACTTGGAATGAAGGCCAAACCC CAGATATGAGTGTCTCCAGTGCACCGCAAAAACTTCCTGCACCATCTCCAAGTGGGAGGCCTTCTCCTGCCCCTACAGC TGCCCAGCCTGCTGCTGCTATGCCTGGGCCTTCTGTACCACAGCCACCACCTGGACAGCCTTCCCCCATTGTTCAGCTG CAGCAAAAGCAGAATCGCATCAGCCCTATTCAAAAGCCACAAGGATTAGACCCCGTTGAAATTCTTCAAGAACGTGAAT ATAGGCTTCAAGCACGAATTGCTCACAGAATCCAGGAACTGGAGAACTTGCCAGGTTCTCTGCCCCCTGATCTGCGAAC CAAAGCGACGGTGGAGTTGAAGGCACTTAGGTTACTGAATTTCCAGCGCCAGTTGAGACAAGAGGTAGTAGCCTGTATG CGTCGTGATACAACCCTGGAGACGGCACTGAACTCCAAGGCCTATAAACGAAGCAAGCGCCAGACTTTGAGGGAGGCAC GTATGACTGAAAAGCTTGAGAAACAGCAGAAGATAGAACAGGAGAGGAAGCGTAGACAGAAGCATCAGGAGTACCTGAA TAGCATATTGCAGCATGCTAAAGACTTCAAGGAGTACCATCGGTCAGTGGCTGGCAAGATTCAGAAACTTTCCAAAGCT GTGGCAACTTGGCATGCCAACACTGAACGTGAGCAGAAGAAAGAAACTGAGAGAATTGAGAAAGAAAGAATGAGGAGAC TAATGGCTGAAGATGAAGAAGGCTACCGTAAGCTGATTGACCAAAAGAAAGATAGACGCCTGGCCTATCTGTTGCAGCA GACAGACGAGTACGTTGCTAACTTGACTAATCTGGTATGGGAACATAAACAGGCACAAGCAGCCAAAGAAAAGAAGAAG AGGAGGAGAAGAAAGAAGAAGGCTGAAGAGAATGCAGAAGGCATGGCATCTGGTCTTGGTCCTGATGGAGAGCCCATAG ATGAGAGCAGCCAGATGAGTGACCTTCCTGTCAAAGTGACTCACACTGAAACAGGCAAAGTTCTTCTTGGTCCAGAGGC ACCAAAAGCAAGTCAGCTAGATGCTTGGCTGGAAATGAACCCTGGCTATGAAGTTGCTCCCAGGTCAGACAGTGAAGAT GAAAGTGGTTCTGAATATGAGGAGGAGGATGATGAAGAAGAATCAAGCAGATTAGAAGCAGATGAGAAGATACTCCTGG ATCCTAACAGTGAAGAAGTTTCTGAGAAAGATGCTAAGCAAATAATTGAGACAGCCAAACAAGATGTGGATGATGAATA CAGTATGCAATATAGTGCTAGAGGGTCTCAGTCCTACTACACAGTTGCACATGCAATCACAGAAAGGGTGGAAAAGCAG TCTTCTCTTCTAATTAATGGCACACTAAAACATTATCAGCTTCAGGGACTGGAATGGATGGTTTCACTCTATAATAACA ATCTGAATGGGATTTTAGCTGATGAAATGGGTCTGGGAAAGACAATTCAGACTATCGCACTTATCACTTACTTGATGGA GCACAAAAGGCTCAATGGCCCCTATCTCATCATTGTTCCCCTTTCGACATTATCCAACTGGACATACGAATTTGACAAA TGGGCTCCTTCTGTGGTGAAGATATCTTACAAGGGTACACCTGCAATGCGCCGCTCACTTGTTCCTCAGCTTCGAAGTG GAAAATTTAATGTTCTTTTGACTACTTATGAGTACATAATAAAGGACAAACATATCCTTGCTAAGATTCGATGGAAATA CATGATAGTAGATGAAGGTCATCGAATGAAGAATCATCACTGCAAACTGACTCAGGTCTTGAACACTCACTATGTGGCC CCTAGGCGAATTCTACTGACTGGGACACCATTGCAGAATAAATTGCCTGAACTGTGGGCTCTTCTCAATTTCCTTCTCC CAACCATCTTCAAGAGCTGTAGCACCTTTGAACAGTGGTTCAATGCTCCATTTGCCATGACAGGAGAAAGGGTGGACTT AAATGAAGAAGAAACTATTCTGATCATCCGTCGTCTCCATAAAGTACTCCGACCCTTCTTGCTGAGAAGACTGAAGAAG GAAGTAGAGTCTCAACTGCCAGAAAAGGTAGAATATGTGATCAAATGTGATATGTCTGCTCTCCAGAAGATCCTATACC GACACATGCAAGCCAAGGGAATCCTTCTTACAGATGGTTCTGAGAAAGACAAGAAGGGAAAAGGTGGCGCAAAGACTCT TATGAACACCATCATGCAACTGAGAAAGATTTGCAATCATCCATATATGTTTCAGCACATTGAGGAATCCTTTGCTGAA CATTTAGGCTACTCAAATGGTGTCATCAATGGAGCTGAACTTTATCGGGCCTCCGGAAAGTTTGAGCTACTTGATCGTA TTCTACCAAAGTTACGAGCTACAAACCATCGTGTGCTTCTTTTCTGTCAAATGACATCACTCATGACCATTATGGAAGA CTACTTTGCCTTTCGAAATTTCCTGTACTTGCGTCTTGATGGCACAACAAAATCAGAAGACAGAGCTGCTCTCTTGAAG AAGTTCAACGAGCCTGGGTCACAATACTTTATCTTTTTGCTGAGTACAAGGGCTGGAGGGCTAGGCTTAAATCTCCAGG CTGCTGATACTGTTATAATCTTTGATAGTGACTGGAATCCTCACCAGGACTTGCAGGCACAAGATAGAGCTCACCGAAT TGGCCAGCAGAATGAAGTTCGAGTTTTGCGACTGTGCACCGTGAACAGCGTGGAAGAGAAGATTCTTGCTGCTGCAAAG TATAAGTTGAATGTAGATCAAAAAGTTATTCAGGCTGGAATGTTTGATCAAAAGTCTTCAAGTCATGAAAGGAGGGCTT TTCTACAGGCTATACTGGAGCATGAGGAAGAAAATGAGGAAGAAGATGAAGTTCCTGATGATGAGACTCTGAATCAGAT GATTGCTCGACGTGAAGAGGAATTTGATCTCTTTATGCGTATGGACATGGACCGTCGTAGAGAAGATGCCAGAAACCCC AAGCGCAAGCCCCGCTTGATGGAGGAGGATGAGTTGCCATCGTGGATTATTAAGGATGATGCTGAAGTTGAAAGGCTCA CGTGTGAAGAAGAGGAAGAAAAGATATTTGGAAGAGGATCCCGTCAACGTAGGGATGTGGACTACAGTGATGCTCTCAC AGAGAAACAGTGGCTGCGGGCAATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAAGTCCGGCTTAAAAAGCGGAAG AGACGAAGAAATGTGGATAAGGATTCTGGGAAGGAGGATGGAGAGAAAGCAAAGAAAAGAAGAGGCAGACCTCCTGCAG AGAAATTATCACCTAACCCACCCAAACTGACGAAACAAATGAATGCCATCATTGATACAGTGATAAACTACAAAGACAG TTCTGGGCGGCAGCTAAGTGAAGTCTTCATTCAGCTCCCATCGAGGAAAGAACTACCAGAGTATTATGAATTGATTAGG AAACCAGTGGACTTCAAAAAAATTAAGGAAAGAATTCGCAACCATAAATATCGGAGTCTTGGGGATCTGGAGAAGGATG TCATGTTGCTGTGTCATAATGCTCAGACATTCAATCTGGAGGGATCACAGATCTATGAGGATTCTATTGTTCTTCAGTC TGTGTTCAAAAGTGCACGACAGAAGATTGCCAAAGAAGAAGAAAGTGAGGACGAAAGCAATGATGATGAAGATGAGGAT GATGAAGAGGAGTCAGAGTCAGAATCAAAATCTGTGAAAGTCAAAATCAAGCTGAATAAGAAGGATGAAAAAAGTCGGG AGAAAGGAAAAGGCAAGAAGAGGCAAAGCCGAGCAAAAGCCAAACCTGTTGTGAGTGATGATGATAGTGATGAGGATCA AGATGAAAATGACCAGTCGGAAGCAAGCGGAAGTGATGATGAGTGA
Citation	Isabel Olivera-Martinez, Nick Schurch, Roman A Li, Junfang Song, Pamela A Halley, Raman M Das, Dave W Burt, Geoffrey J Barton, Kate G Storey. Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo. Development 2014 Aug;141(16):3266-76. Epub 2014 Jul 25. DOI: 10.1242/dev.112623.
Copyright	Copyright © 2014. Published by The Company of Biologists Ltd.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_205139.1).

Stage

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7-10

stage 10

Neural Plate/Tube

all

Entry 2

GEISHA Id	SMARCA2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGCTACTCAAATGGTGTCATCAATGGAGCTGAACTTTATCGGGCCTCCGGAAAGTTTGAGCTACTTGATCGTATTCTAC CAAAGTTACGAGCTACAAACCATCGTGTGCTTCTTTTCTGTCAAATGACATCACTCATGACCATTATGGAAGACTACTT TGCCTTTCGAAATTTCCTGTACTTGCGTCTTGATGGCACAACAAAATCAGAAGACAGAGCTGCTCTCTTGAAGAAGTTC AACGAGCCTGGGTCACAATACTTTATCTTTTTGCTGAGTACAAGGGCTGGAGGGCTAGGCTTAAATCTCCAGGCTGCTG ATACTGTTATAATCTTTGATAGTGACTGGAATCCTCACCAGGACTTGCAGGCACAAGATAGAGCTCACCGAATTGGCCA GCAGAATGAAGTTCGAGTTTTGCGACTGTGCACCGTGAACAGCGTGGAAGAGAAGATTCTTGCTGCTGCAAAGTATAAG TTGAATGTAGATCAAAAAGTTATTCAGGCTGGAATGTTTGATCAAAAGTCTTCAAGTCATGAAAGGAGGGCTTTTCTAC AGGCTATACTGGAGCATGAGGAAGAAAATGAGGAAGAAGATGAAGTTCCTGATGATGAGACTCTGAATCAGATGATTGC TCGACGTGAAGAGGAATTTGATCTCTTTATGCGTATGGACATGGACCGTCGTAGAGAAGATGCCAGAAACCCCAAGCGC AAGCCCCCGCTTGATGGAGGAGGATGAGTTGCCATCGTGGATTATTAAGGATGGATGCTGAAAGTTGAAAAGGGCTCAC GCGTGAAAAAA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.