Geisha

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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXC6
homeobox C6

Gene

Official Symbol	HOXC6
Official Full Name	homeobox C6
CGNC ID	64714
also known as	HOXC-6, homeobox protein Hox-C6\|homeo box C6\|homeobox protein C6
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_003643454
Polypeptide	XP_003643502

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	100858368
Ensembl Gene
KEGG	gga:100858368

Entry 1

GEISHA Id	ChEST412N18	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCGGCTCGAGCGGGTCAGCTGACTTGTCATTTGTCTGTCCTGGAGCAGAGCCTTCCCTATAACAATCTAGTTCAGACTA CAAACTGGAGACAGAAATAAATATTAAAGAAATCACACAGCCAGGTATAGAGGACGATATGAATTCCTATTTCACAAAC CCATCTTTATCCTGCCATCTAACCAGTGGCCAAGAGGTGCTTCCCAACGTAGCCCTCAATTCAACTGCCTATGACCCTG TCAGGCATTTTTCTACTTATGGAGCAGCCGTTGCTCAAAACCGGATTTATTCTTCTCCTTTTTATTCACCGCAAGATAA TGTTGTGTTTAGCTCCAGCCGAGGACCTTATGACTATGGATCTAATGCTTTTTACCAAGAAAAAGACATGCTTTCTAGC TGCAGGCAAAATTCTATGGGACATAATACACAGACATCAATCGCACAGGATTTTACCAGTGACCAAAACAGGAACACTT CGCAAGAACAAAAAACTAGCATTCAAATATACCCATNGGATGCAGCGTATGAACTCCCACAGTGGTAAGTTTTACAGCT CGGAGATATAAATTAAATAAACTGAACCATCTTTACGACTTCTCCCTAGCAGAACCAGGCTGAGCGACTTTTTTATGGC CCATAAAAACAATAATATAGCTCCTTCAACAGTTGCAGCTACAGGCCTTTAATTTGTAGGTTGGTTGCAAGCAATATGG
Comments	no specific expression detected stages 6-15. Probe supposed to be Hox-c6

Stage

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Location (click to highlight)

Comments (click to highlight)

19-22

stage 19

stage 22

Paraxial Mesoderm
Somites
Spinal Cord

caudal embryo

Entry 2

GEISHA Id	Hoxc-6.Reid.2002	Data Source	Publication
Complete cDNA Template Probe	show GGCGTGGGCTACGGGGCCGACCGCCGGCGGGGCCGCCAGATTTATTCCCGTTACCAAACGTTGGAGCTGGAGAAGGAAT TTCACTTCAACCGCTACCTGACGAGGCGGAGGCGGATCGAAATCGCCAACGCTCTCTGCCTGACGGAACGGCAGATCAA GATTTGGTTCCAGAACCGAAGGATGAAATGGAAAAAAGAAAGCAACTTAAGCTCGACCCTCTCCGGGGCGGGTGGTGGA ACCGCGGCCGCCGCGGATAGTTTGGCCAAGGAGGAGGGATACTGCTCTCAGATGTTGGGTGCTGTGTGAAGCCCAGAAT TGGACTCAGTGATCCTTGTGGGTCCCTTCCAACTCAGGGTTATTCTATGATTCACGGTTGCCTCTCTGATCTTGTCTAT CATCTAACAGTTTCTAGGGGGGGGCATGGCAATGGCTGAATAATCAGCTGTAAGAGACAGGGCATGATTCTTTCAAGGT GGCTGCCGTAAATCCAGTGGACTTGCTTTGCCAGCCAAGGAGAGCTTTGATTCTTGATCTCTGGTGCTTTGCCAGGAGG CCATTGAGGAGAATGCTACCACTGCTGTTGGCTCTCCCTCAGCATCAGCGCCTTCTTTCCCTGCAG
Citation	Reid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
Copyright	Copyright © 2007 UBC Press
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (X80114).

Stage

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Location (click to highlight)

Comments (click to highlight)

25-30

stage 30

Hindbrain
Spinal Cord
Surface Ectoderm

31-44

stage 44

Comparison of several genes

Entry 3

GEISHA Id	Hoxc-6.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show CCCCCCCCCAAAAAAAAGCCCCGGGGCCGCCGGGGGGGGTCGTTTTGGGGGTTCAGGACTTACTTTCAATGCACACTTA GTTTCAACTAGGGAATCAACAGAAGCAAAAGCAATTTTTCCCTTTTTGACACCCGCCTCCCCATTGGCTCCCCCCGGGT CAGCTGACTTTGTCATTTTGTCTGTCCTGGAGCAGAGCCTTCCCTATAACAATCTAGTTCAGACTACAAACTGGAGACA GAAATAAATATTAAAGAAATCACACAGCCAGGTATAGAGGACGATATGAATTCCTATTTCACAAACCCATCTTTATCCT GCCATCTAACCAGTGGCCAAGAGGTGCTTCCCAACGTAGCCCTCAATTCAACTGCCTATGACCCTGTCAGGCATTTTTC TACTTATGGAGCAGCCGTTGCTCAAAACCGGATTTATTCTTCTCCTTTTTATTCACCGCAAGATAATGTTGTGTTTAGC TCCAGCCGAGGACCTTATGACTATGGATCTAATGCTTTTTACCAAGAAAAAGACATGCTTTCTAGCTGCAGGCAAAATT CTATGGGACATAATACACAGACATCAATCGCACAGGATTTTACCAGTGACCAAAACAGGAACACTTCGCAAGAACAAAA AACTAGCATTCAAATATACCCATGGATGCAGCGTATGAACTCCCACAGTGTGTGTTTTGTCTCGGCTCCCCCAGGCGTG GGCTACGGGGCCGACCGCCGGCGGGGCCGCCAGATTTATTCCCGTTACCAAACGTTGGAGCTGGAGAAGGAATTTCACT TCAACCGCTACCTGACGAGGCGGAGGCGGATCGAAATCGCCAACGCTCTCTGCCTGACGGAACGGCAGATCAAGATTTG GTTCCAGAACCGAAGGATGAAATGGAAAAAAGAAAGCAACTTAAGCTCGACCCTCTCCGGGGCGGGTGGTGGAACCGCG GCCGCCGCCGCCGATAGTTTGGCCAAGGAGGAGAAGCGAGAAGAGACAGAGGAGGAGAAGCAGAAGGAGTGAAAAGTGG CAGCGCTCCCCACCCCCCCCCCACACACCTC
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( XM_015300352).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

Leg
Wing

25-30

stage 25

Leg
Limb Buds
Wing

31-44

stage 44

Entry 4

GEISHA Id	HOXC6.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATGAATTCCTATTTCACAAACCCATCTTTATCCTGCCATCTAACCAGTGGCCAAGAGGTGCTTCCCAACGTAGCCCTCA ATTCAACTGCCTATGACCCTGTCAGGCATTTTTCTACTTATGGAGCAGCCGTTGCTCAAAACCGGATTTATTCTTCTCC TTTTTATTCACCGCAAGATAATGTTGTGTTTAGCTCCAGCCGAGGACCTTATGACTATGGATCTAATGCTTTTTACCAA GAAAAAGACATGCTTTCTAGCTGCAGGCAAAATTCTATGGGACATAATACACAGACATCAATCGCACAGGATTTTACCA GTGACCAAAACAGGAACACTTCGCAAGAACAAAAAACTAGCATTCAAATATACCCATGGATGCAGCGTATGAACTCCCA CAGTGGCGTGGGCTACGGGGCCGACCGCCGGCGGGGCCGCCAGATTTATTCCCGTTACCAAACGTTGGAGCTGGAGAAG GAATTTCACTTCAACCGCTACCTGACGAGGCGGAGGCGGATCGAAATCGCCAACGCTCTCTGCCTGACGGAACGGCAGA TCAAGATTTGGTTCCAGAACCGAAGGATGAAATGGAAAAAAGAAAGCAACTTAAGCTCGACCCTCTCCGGGGCGGGTGG TGGAACCGCGGCCGCCGCCGCCGATAGTTTGGCCAAGGAGGAGAAGCGAGAAGAGACAGAGGAGGAGAAGCAGAAGGAG TGA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001407494).