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PAX1 paired box 1Gene | Official Symbol | PAX1 | Official Full Name | paired box 1 | CGNC ID | 63989 | also known as | GPX-1, Pax-1, paired box protein Pax-1|Paired box protein Pax-1 | gene type | protein-coding |
| Genomic Map | | Sequence Information | | Gene Expression | In Situ Hybridization | GEISHA | EST Profile | |
| Orthology | | Entrez Gene | Ensembl Gene | Genetic Phenotypes | MOD | Fruit Fly | | | | | Human | | | | | Mouse | | | | | Xenopus | | | | | Zebrafish | | | | |
| Gene Ontology | Molecular Function | | Biological Process | | Cellular Component | |
| Links to other databases | |
Entry 1GEISHA Id | PAX1.Bothe.2007 | Data Source | Publication | Complete cDNA Template Probe | show CTTTCACAATTTTCCCTCCCCATCGCCTCCCTCGCGGGGCACTGACACTCTCCCCGCCCGGCCCATCGCGGCCCGGCAG AGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCCCTGCCCAACGCCATCCGCCTGCG GATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAGC AAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACCC CCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGTCTGCT GGCCGACGGTGTCTGTGACAAGTACAACGTGCCCTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAGC CTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTACC AGTACCCGTACCCCGGCCCCATGGACCCACGGGCAGCCAAGATGGGCGCTGATCCCCCGGGGCCCGTCCCCGCGGCCCA CGTCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACG GGTGGGTACCGAAAGTCACTGGGACAGCGCTTCTGCCCTCGGGGTTTTTCCGTCGGGAAAAGCCCCGACGGCTGAGAGT TGATCCTGACTGCTCGCGGCTCTGTCTGCCCAGGGGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGA AAACTGTCCCGCGTGAACAGGACTGCCTTCCCTTCCGCCCAGGCCGACAAAGCCGCCGAGGAAGGGGACATCAAATACC CGCAGGTAAGGGCGGAGGGGCCGGGCCGGGGGCCGCCGTCAGGGCTGCCACGCGCCTCCGACACGAGTGTCTGTGCCCA GCCCGC | Citation | Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409. | Copyright | Copyright © 2007 Wiley-Liss, Inc. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # U22046). Note: this is quail sequence. |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 13-15 |
| stage 15 | | stage 15 | | stage 15 | | Sclerotome
|
Entry 2GEISHA Id | PAX1.Lin.2007 | Data Source | Publication | Complete cDNA Template Probe | show AGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACCCC CAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGTCTGCTG GCCGACGGTGTCTGTGACAAGTACAACGTGCCCTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAGCC TCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTACCA GTACCCGTACCCCGGCCCCATGGACCCACGGGCAGCCAAGATGGGCGCTGATCCCCCGGGGCCCGTCCCCGCGGCCCAC GTCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACGG GTGGGTACCGAAAGTCACTGGGACAGCGCTTCTGCCCTCGGGGTTTTTCCGTCGGGAAAAGCCCCGACGGCTGAGAGTT GATCCTGACTGCTCGCGGCTCTGTCTGCCCAGGGGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGAA AACTGTCCCGCGTGAACAGGACTGCCTTCCCTTCCGCCCA | Citation | Lin J, Redies C, Luo J. Regionalized expression of ADAM13 during chicken embryonic development. Dev Dyn. 2007 Mar;236(3):862-70. | Copyright | Copyright © 2007 Wiley-Liss, Inc. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (U22046). The primers used were 5'-AGATCCTGGCCCGCTACAACGAGA-3' as the forward primer, and 5'-TGGGCGGAAGGGAAGGCAGTC-3' as the reverse primer. |
Entry 3GEISHA Id | PAX1.Huang.2003 | Data Source | Publication | Complete cDNA Template Probe | show CTTTCACAATTTTCCCTCCCCATCGCCTCCCTCGCGGGGCACTGACACTCTCCCCGCCCGGCCCATCGCGGCCCGGCAG AGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCCCTGCCCAACGCCATCCGCCTGCG GATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAGC AAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACCC CCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGTCTGCT GGCCGACGGTGTCTGTGACAAGTACAACGTGCCCTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAGC CTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTACC AGTACCCGTACCCCGGCCCCATGGACCCACGGGCAGCCAAGATGGGCGCTGATCCCCCGGGGCCCGTCCCCGCGGCCCA CGTCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACG GGTGGGTACCGAAAGTCACTGGGACAGCGCTTCTGCCCTCGGGGTTTTTCCGTCGGGAAAAGCCCCGACGGCTGAGAGT TGATCCTGACTGCTCGCGGCTCTGTCTGCCCAGGGGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGA AAACTGTCCCGCGTGAACAGGACTGCCTTCCCTTCCGCCCAGGCCGACAAAGCCGCCGAGGAAGGGGACATCAAATACC CGCAGGTAAGGGCGGAGGGGCCGGGCCGGGGGCCGCCGTCAGGGCTGCCACGCGCCTCCGACACGAGTGTCTGTGCCCA GCCCGC | Citation | Huang R, Stolte D, Kurz H, Ehehalt F, Cann GM, Stockdale FE, Patel K, Christ B. Ventral axial organs regulate expression of myotomal Fgf-8 that influences rib development. Dev Biol. 2003 Mar 1;255(1):30-47. | Copyright | Copyright © 2003 Elsevier Science (USA) All rights reserved. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (U22046). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 19 | | stage 19 | | Leg Somites
|
Entry 4GEISHA Id | PAX1.Grevellec.2011 | Data Source | Publication | Complete cDNA Template Probe | show CGGGCGGAGGGTGCCGAGTCCTCTCCAGGTCCCCCCGGCGGCCGCGGGGAGCGGCCGCCGCGGCCATTTAGGAGCGGAG CGGGAGCCAATGGGAGGCCGCCGGGCGCTTCCAGCGTGACGGCCGAGATTGACGTGTTTCCCACGTCAAATTGATCCCA AGTAGCGGCGGGGGCTCCCCGCGAGCGGGGAACCGGCGCGGCGCCGCCACGACAGCCCCGCGGCCGCCGCCCCCCGCAG CCCCGCCGCCGGCTCCCGCTCCGGCTCCCTCTATGCCGCGCCGGCGGCGGCTGCGGCGCTGCCCCACTGCCGGGCGATG GAGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCGCTGCCCAACGCCATCCGCCTGC GGATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAG CAAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACC CCCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGGCTGC TGGCCGACGGCGTCTGCGACAAGTACAACGTGCCGTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAG CCTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTAC CAGTACCCGTACCCCGGCCCCATGGCCCCGCCGGCAGCCAAGATGAGCGCTCATCCCGGGCCCGTCCCCGCGGCCCACG TCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACGGG GGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGAAGACTGGCCCGGCGTGAACAGGACTGCCTTCCCT TCCGCCCAGGCCGACAAAGCCGCCGTGGAAGGGGACATCAAATACCCGCAGCCCGCCCCGGGACTCTCCTCCGTGGGCA GCTTCCTCCCGGCCTGCGCCTATCCCCCCGGCAACCAGCACGGCGTCTACGGCGCGCCCGGCGGCTACATCCCCCCGGG GCACCCCTGGCAGCCGCAGGGCCACCACGGCCCCGGTGTGACGGTGCACGGAGGCGACCTGGCCGGCGCCATGGCCTTC AAGCAGCCCGGCAGGGAAGTCACGGACAGAAAACCCGGCAGCCCCGTGGGGAAGTCCCCGGATCCTCTCAGCCCCATCC ACGGACTCTCGATCCCAGCCTCCTCCTCCTAGAGCCGCGCACCGGGCACACTCGCTTGGAACACACACCTGCAAACCGT GACTGGATCCCGAAGTGCCACCCAACTGTCACCCGAGTGCCACTGCCTCCGAGGGACGAGGAGACCGGCGAGCGGCGAC GTCCTCCCACGGCCGTCCCTGCACCGGGGGACGCGGTGGGGACACTCCTGGGGACACGTTACCTCCATCGGATCGCGGA GGGGTTACGGAAGAGACTCAGCCTTCCCCCTTTATTGCGTCTTTCTGCTTTTTTTTACCCCCTCGCTTTCAGTTTTCCT CTCTCCGCACCGTCCCCCGTGGACCGCCGGCCGCATACCAGCCTCTGTCCCAGCCCCAGAATGGAACCAGCAGCCGGAG TGTAAATGGACAAATAAGCCACAACTTTTTTTGTGATATATTTTTATAATAACAAACCTTAATAAATAAATAATAATGA TAATAATAATAA | Citation | Grevellec A, Graham A, Tucker AS. Shh signalling restricts the expression of Gcm2 and controls the position of the developing parathyroids. Dev Biol. 2011 May 15;353(2):194-205. Epub 2011 Feb 22. | Copyright | Copyright © 2011 Elsevier Inc. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_003640897.1). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 19-24 | | stage 24 | | stage 24 | | Pharyngeal Arches and Clefts
|
Entry 5GEISHA Id | PAX1.Moeller.2003 | Data Source | Publication | Complete cDNA Template Probe | show ATGGGCAGTTGGGAAAGGCGAGTTTTGCTCCAAGAAGGCCTTAAAAAAAAGAAAAACACAGGGAAAGACATTGACATTG ATGCTGTAAACCCCGCGAGCGACACGGGAGCCAACCGGGAAGGCGCAGATAAGGAGCGAATGGCGGCGTATCGCGGGCG TCCCGTCAATCACGCGTCCATCTCTGGGTGCCCAGACAGAGCGGAGCACACGTACGGGGAGGTGAACCAGCTGGGTGGT GTCTTCGTGAACGGGCGTCCGCTGCCCAACGCCATCCGCCTGCGGATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGT GCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAGCAAGATCCTGGCCCGCTACAACGAGACCGGCTCCAT CCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACCCCCAACGTGGTCAAGCACATCCGCGACTACAAGCAG GGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGGCTGCTGGCCGACGGCGTCTGCGACAAGTACAACGTGCCGT CGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAGCCTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAA GCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTACCAGTACCCGTACCCCGGCCCCATGGCCCCGCCGGCA GCCAAGATGAGCGCTCATCCCGGGCCCGTCCCCGCGGCCCACGTCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTG TCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACGGGGGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCC CAAAATGGAAGACTGGCCCGGCGTGAACAGGACTGCCTTCCCTTCCGCCCAGGCCGACAAAGCCGCCGTGGAAGGGGAC ATCAAATACCCGCAGCCCGCCCCGGGACTCTCCTCCGTGGGCAGCTTCCTCCCGGCCTGCGCCTATCCCCCCGGCAACC AGCACGGCGTCTACGGCGCGCCCGGCGGCTACATCCCCCCGGGGCACCCCTGGCAGCCGCAGGGCCACCACGGCCCCGG TGTGACGGTGCACGGAGGCGACCTGGCCGGCGCCATGGCCTTCAAGCAGCCCGGCAGGGAAGTCACGGACAGAAAACCC GGCAGCCCCGTGGGGAAGTCCCCGGATCCTCTCAGCCCCATCCACGGACTCTCGATCCCAGCCTCCTCCTCCTAG | Citation | Moeller C, Swindell EC, Kispert A, Eichele G
Carboxypeptidase Z (CPZ) modulates Wnt signaling and regulates the development of skeletal elements in the chicken. Development. 2003 Nov;130(21):5103-11. Epub 2003 Aug 27
| Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # XM_003640897.1). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 31-36 | | stage 36 | | stage 36 | | Wing Mesenchyme
|
Entry 6GEISHA Id | PAX1.Senthinathan.2012 | Data Source | Publication | Complete cDNA Template Probe | show CTTTCACAATTTTCCCTCCCCATCGCCTCCCTCGCGGGGCACTGACACTCTCCCCGCCCGGCCCATCGCGGCCCGGCAG AGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCCCTGCCCAACGCCATCCGCCTGCG GATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAGC AAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACCC CCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGTCTGCT GGCCGACGGTGTCTGTGACAAGTACAACGTGCCCTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAGC CTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTACC AGTACCCGTACCCCGGCCCCATGGACCCACGGGCAGCCAAGATGGGCGCTGATCCCCCGGGGCCCGTCCCCGCGGCCCA CGTCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACG GGTGGGTACCGAAAGTCACTGGGACAGCGCTTCTGCCCTCGGGGTTTTTCCGTCGGGAAAAGCCCCGACGGCTGAGAGT TGATCCTGACTGCTCGCGGCTCTGTCTGCCCAGGGGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGA AAACTGTCCCGCGTGAACAGGACTGCCTTCCCTTCCGCCCAGGCCGACAAAGCCGCCGAGGAAGGGGACATCAAATACC CGCAGGTAAGGGCGGAGGGGCCGGGCCGGGGGCCGCCGTCAGGGCTGCCACGCGCCTCCGACACGAGTGTCTGTGCCCA GCCCGC | Citation | Senthinathan B, Sousa C, Tannahill D, Keynes R. The generation of vertebral segmental patterning in the chick embryo. J Anat. 2012 Jun;220(6):591-602. | Copyright | © 2012 The Authors. Journal of Anatomy © 2012 Anatomical Society. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #U22046.1). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 13-18 | | stage 13 | | stage 13 | | Sclerotome
| 19-24 | | stage 24 | | Sclerotome
| 25-30 | | stage 25 | | stage 25 | | stage 29 | | stage 29 | | stage 29 | | stage 29 | | stage 29 | | stage 30 | | Somites Spinal Ganglia and Nerves
|
Entry 7GEISHA Id | PAX1.Malashichev.2005 | Data Source | Publication | Complete cDNA Template Probe | show ATGCGGCGTTCGGGCGGGCGCGATGCTGCGATCTCCGCTGACATCTTGTGGCCGGGCCCCGCATCTCTCCATCTCCGCT TCTCCATATCCCCGCGTCTCCGCCGGGAGGGGCCTTTTTTTTCCCCCTACACCCCGTCAGCTGCTTGGGAAAGAGCTTC AGTCTGTTCCCACGTCGCTAGAAATGAATCGGATCCAGGGTCTTCCCCAAAAGAGCACACGTACGGGGAGGTGAACCAG CTGGGTGGTGTCTTCGTGAACGGGCGTCCGCTGCCCAACGCCATCCGCCTGCGGATCGTGGAGCTGGCCCAGCTCGGCA TTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAGCAAGATCCTGGCCCGCTACAACGAGAC CGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACCCCCAACGTGGTCAAGCACATCCGCGAC TACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGGCTGCTGGCCGACGGCGTCTGCGACAAGTACA ACGTGCCGTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAGCCTCTCGCAGCCCGGCGGCCCTTACGA CGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTACCAGTACCCGTACCCCGGCCCCATGGCC CCGCCGGCAGCCAAGATGAGCGCTCATCCCGGGCCCGTCCCCGCGGCCCACGTCGGGCTGCCCCGCTCCTGGCCCTCGG CTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACGGGGGCTTTGGGTGGCACCGAGGGCTCTGC TTACCCCCCCAAAATGGAAGACTGGCCCGGCGTGAACAGGACTGCCTTCCCTTCCGCCCAGGCCGACAAAGCCGCCGTG GAAGGGGACATCAAATACCCGCAGCCCGCCCCGGGACTCTCCTCCGTGGGCAGCTTCCTCCCGGCCTGCGCCTATCCCC CCGGCAACCAGCACGGCGTCTACGGCGCGCCCGGCGGCTACATCCCCCCGGGGCACCCCTGGCAGCCGCAGGGCCACCA CGGCCCCGGTGTGACGGTGCACGGAGGCGACCTGGCCGGCGCCATGGCCTTCAAGCAGCCCGGCAGGGAAGTCACGGAC AGAAAACCCGGCAGCCCCGTGGGGAAGTCCCCGGATCCTCTCAGCCCCATCCACGGACTCTCGATCCCAGCCTCCTCCT CCTAGAGCCGCGCACCGGGCACACTCGCTTGGAACACACACCTGCAAACCGTGACTGGATCCCGAAGTGCCACCCAACT GTCACCCGAGTGCCACTGCCTCCGAGGGACGAGGAGACCGGCGAGCGGCGACGTCCTCCCACGGCCGTCCCTGCACCGG GGGACGCGGTGGGGACACTCCTGGGGACACGTTACCTCCATCGGATCGCGGAGGGGTTACGGAAGAGACTCAGCCTTCC CCCTTTATTGCGTCTTTCTGCTTTTTTTTACCCCCTCGCTTTCAGTTTTCCTCTCTCCGCACCGTCCCCCGTGGACCGC CGGCCGCATACCAGCCTCTGTCCCAGCCCCAGAATGGAACCAGCAGCCGGAGTGTAAATGGACAAATAAGCCACAACTT TTTTTGTGATATATTTTTATAATA | Citation | Malashichev Y, Borkhvardt V, Christ B, Scaal M. Differential regulation of avian pelvic girdle development by the limb field ectoderm. Anat Embryol (Berl). 2005 Oct;210(3):187-97. Epub 2005 Oct 18. | Copyright | © Springer, Part of Springer Science+Business Media | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (Acc. # XM_003640897.2). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 25-29 | | stage 26 | | stage 27 | | stage 28 | | stage 29 | | Limb Buds Paraxial Mesoderm
|
Entry 8GEISHA Id | Pax-1.Hsu.1997 | Data Source | Publication | Complete cDNA Template Probe | show CGGGCGGAGGGTGCCGAGTCCTCTCCAGGTCCCCCCGGCGGCCGCGGGGAGCGGCCGCCGCGGCCATTTAGGAGCGGAG CGGGAGCCAATGGGAGGCCGCCGGGCGCTTCCAGCGTGACGGCCGAGATTGACGTGTTTCCCACGTCAAATTGATCCCA AGTAGCGGCGGGGGCTCCCCGCGAGCGGGGAACCGGCGCGGCGCCGCCACGACAGCCCCGCGGCCGCCGCCCCCCGCAG CCCCGCCGCCGGCTCCCGCTCCGGCTCCCTCTATGCCGCGCCGGCGGCGGCTGCGGCGCTGCCCCACTGCCGGGCGATG GAGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCGCTGCCCAACGCCATCCGCCTGC GGATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAG CAAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACC CCCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGGCTGC TGGCCGACGGCGTCTGCGACAAGTACAACGTGCCGTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAG CCTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTAC CAGTACCCGTACCCCGGCCCCATGGCCCCGCCGGCAGCCAAGATGAGCGCTCATCCCGGGCCCGTCCCCGCGGCCCACG TCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACGGG GGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGAAGACTGGCCCGGCGTGAACAGGACTGCCTTCCCT TCCGCCCAGGCCGACAAAGCCGCCGTGGAAGGGGACATCAAATACCCGCAGCCCGCCCCGGGACTCTCCTCCGTGGGCA GCTTCCTCCCGGCCTGCGCCTATCCCCCCGGCAACCAGCACGGCGTCTACGGCGCGCCCGGCGGCTACATCCCCCCGGG GCACCCCTGGCAGCCGCAGGGCCACCACGGCCCCGGTGTGACGGTGCACGGAGGCGACCTGGCCGGCGCCATGGCCTTC AAGCAGCCCGGCAGGGAAGTCACGGACAGAAAACCCGGCAGCCCCGTGGGGAAGTCCCCGGATCCTCTCAGCCCCATCC ACGGACTCTCGATCCCAGCCTCCTCCTCCTAGAGCCGCGCACCGGGCACACTCGCTTGGAACACACACCTGCAAACCGT GACTGGATCCCGAAGTGCCACCCAACTGTCACCCGAGTGCCACTGCCTCCGAGGGACGAGGAGACCGGCGAGCGGCGAC GTCCTCCCACGGCCGTCCCTGCACCGGGGGACGCGGTGGGGACACTCCTGGGGACACGTTACCTCCATCGGATCGCGGA GGGGTTACGGAAGAGACTCAGCCTTCCCCCTTTATTGCGTCTTTCTGCTTTTTTTTACCCCCTCGCTTTCAGTTTTCCT CTCTCCGCACCGTCCCCCGTGGACCGCCGGCCGCATACCAGCCTCTGTCCCAGCCCCAGAATGGAACCAGCAGCCGGAG TGTAAATGGACAAATAAGCCACAACTTTTTTTGTGATATATTTTTATAATAACAAACCTTAATAAATAAATAATAATGA TAATAATAATAA | Citation | Hsu CW, Tuan RS. Whole-mount in situ hybridization for developing chick embryos using digoxygenin-labeled RNA probes. Methods Mol Biol. 1997;63:263-70. | Copyright | copyright © Humana Press Inc., Totowa, NJ 1997 | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_015283428.2 ). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 19-24 | | stage 23 | | stage 23 | | Somites
| 31-44 | | stage 44 | | |
Entry 9GEISHA Id | Pax-1.Cauthen.2001 | Data Source | Publication | Complete cDNA Template Probe | show CGGGCGGAGGGTGCCGAGTCCTCTCCAGGTCCCCCCGGCGGCCGCGGGGAGCGGCCGCCGCGGCCATTTAGGAGCGGAG CGGGAGCCAATGGGAGGCCGCCGGGCGCTTCCAGCGTGACGGCCGAGATTGACGTGTTTCCCACGTCAAATTGATCCCA AGTAGCGGCGGGGGCTCCCCGCGAGCGGGGAACCGGCGCGGCGCCGCCACGACAGCCCCGCGGCCGCCGCCCCCCGCAG CCCCGCCGCCGGCTCCCGCTCCGGCTCCCTCTATGCCGCGCCGGCGGCGGCTGCGGCGCTGCCCCACTGCCGGGCGATG GAGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCGCTGCCCAACGCCATCCGCCTGC GGATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAG CAAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACC CCCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGGCTGC TGGCCGACGGCGTCTGCGACAAGTACAACGTGCCGTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAG CCTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTAC CAGTACCCGTACCCCGGCCCCATGGCCCCGCCGGCAGCCAAGATGAGCGCTCATCCCGGGCCCGTCCCCGCGGCCCACG TCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACGGG GGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGAAGACTGGCCCGGCGTGAACAGGACTGCCTTCCCT TCCGCCCAGGCCGACAAAGCCGCCGTGGAAGGGGACATCAAATACCCGCAGCCCGCCCCGGGACTCTCCTCCGTGGGCA GCTTCCTCCCGGCCTGCGCCTATCCCCCCGGCAACCAGCACGGCGTCTACGGCGCGCCCGGCGGCTACATCCCCCCGGG GCACCCCTGGCAGCCGCAGGGCCACCACGGCCCCGGTGTGACGGTGCACGGAGGCGACCTGGCCGGCGCCATGGCCTTC AAGCAGCCCGGCAGGGAAGTCACGGACAGAAAACCCGGCAGCCCCGTGGGGAAGTCCCCGGATCCTCTCAGCCCCATCC ACGGACTCTCGATCCCAGCCTCCTCCTCCTAGAGCCGCGCACCGGGCACACTCGCTTGGAACACACACCTGCAAACCGT GACTGGATCCCGAAGTGCCACCCAACTGTCACCCGAGTGCCACTGCCTCCGAGGGACGAGGAGACCGGCGAGCGGCGAC GTCCTCCCACGGCCGTCCCTGCACCGGGGGACGCGGTGGGGACACTCCTGGGGACACGTTACCTCCATCGGATCGCGGA GGGGTTACGGAAGAGACTCAGCCTTCCCCCTTTATTGCGTCTTTCTGCTTTTTTTTACCCCCTCGCTTTCAGTTTTCCT CTCTCCGCACCGTCCCCCGTGGACCGCCGGCCGCATACCAGCCTCTGTCCCAGCCCCAGAATGGAACCAGCAGCCGGAG TGTAAATGGACAAATAAGCCACAACTTTTTTTGTGATATATTTTTATAATAACAAACCTTAATAAATAAATAATAATGA TAATAATAATAA | Citation | Cauthen CA, Berdougo E, Sandler J, Burrus LW. Comparative analysis of the expression patterns of Wnts and Frizzleds during early myogenesis in chick embryos. Mech Dev. 2001 Jun;104(1-2):133-8. | Copyright | Copyright © 2001 Elsevier Science Ireland Ltd. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_015283428.2). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 7-10 | | stage 10 | | Neural Plate/Tube Somites
| all | | |
Entry 10GEISHA Id | Pax1.Rallis.2001 | Data Source | Publication | Complete cDNA Template Probe | show CGGGCGGAGGGTGCCGAGTCCTCTCCAGGTCCCCCCGGCGGCCGCGGGGAGCGGCCGCCGCGGCCATTTAGGAGCGGAG CGGGAGCCAATGGGAGGCCGCCGGGCGCTTCCAGCGTGACGGCCGAGATTGACGTGTTTCCCACGTCAAATTGATCCCA AGTAGCGGCGGGGGCTCCCCGCGAGCGGGGAACCGGCGCGGCGCCGCCACGACAGCCCCGCGGCCGCCGCCCCCCGCAG CCCCGCCGCCGGCTCCCGCTCCGGCTCCCTCTATGCCGCGCCGGCGGCGGCTGCGGCGCTGCCCCACTGCCGGGCGATG GAGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCGCTGCCCAACGCCATCCGCCTGC GGATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAG CAAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACC CCCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGGCTGC TGGCCGACGGCGTCTGCGACAAGTACAACGTGCCGTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAG CCTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTAC CAGTACCCGTACCCCGGCCCCATGGCCCCGCCGGCAGCCAAGATGAGCGCTCATCCCGGGCCCGTCCCCGCGGCCCACG TCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACGGG GGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGAAGACTGGCCCGGCGTGAACAGGACTGCCTTCCCT TCCGCCCAGGCCGACAAAGCCGCCGTGGAAGGGGACATCAAATACCCGCAGCCCGCCCCGGGACTCTCCTCCGTGGGCA GCTTCCTCCCGGCCTGCGCCTATCCCCCCGGCAACCAGCACGGCGTCTACGGCGCGCCCGGCGGCTACATCCCCCCGGG GCACCCCTGGCAGCCGCAGGGCCACCACGGCCCCGGTGTGACGGTGCACGGAGGCGACCTGGCCGGCGCCATGGCCTTC AAGCAGCCCGGCAGGGAAGTCACGGACAGAAAACCCGGCAGCCCCGTGGGGAAGTCCCCGGATCCTCTCAGCCCCATCC ACGGACTCTCGATCCCAGCCTCCTCCTCCTAGAGCCGCGCACCGGGCACACTCGCTTGGAACACACACCTGCAAACCGT GACTGGATCCCGAAGTGCCACCCAACTGTCACCCGAGTGCCACTGCCTCCGAGGGACGAGGAGACCGGCGAGCGGCGAC GTCCTCCCACGGCCGTCCCTGCACCGGGGGACGCGGTGGGGACACTCCTGGGGACACGTTACCTCCATCGGATCGCGGA GGGGTTACGGAAGAGACTCAGCCTTCCCCCTTTATTGCGTCTTTCTGCTTTTTTTTACCCCCTCGCTTTCAGTTTTCCT CTCTCCGCACCGTCCCCCGTGGACCGCCGGCCGCATACCAGCCTCTGTCCCAGCCCCAGAATGGAACCAGCAGCCGGAG TGTAAATGGACAAATAAGCCACAACTTTTTTTGTGATATATTTTTATAATAACAAACCTTAATAAATAAATAATAATGA TAATAATAATAA | Citation | Rallis C, Stamataki D, Pontikakis S, Mankoo BS, Karagogeos D. Isolation of the avian homologue of the homeobox gene Mox2 and analysis of its expression pattern in developing somites and limbs. Mech Dev. 2001 Jun;104(1-2):121-4. | Copyright | Copyright © 2001 Elsevier Science Ireland Ltd. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_015283428.2). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 13-18 | | stage 16 | | stage 16 | | stage 16 | | stage 16 | | Sclerotome Somites
| 25-26 | | stage 26 | | Limb Buds
| all | | |
Entry 11GEISHA Id | Pax-1.Barnes.1996 | Data Source | Publication | Complete cDNA Template Probe | show CTTTCACAATTTTCCCTCCCCATCGCCTCCCTCGCGGGGCACTGACACTCTCCCCGCCCGGCCCATCGCGGCCCGGCAG AGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCCCTGCCCAACGCCATCCGCCTGCG GATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAGC AAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACCC CCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGTCTGCT GGCCGACGGTGTCTGTGACAAGTACAACGTGCCCTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAGC CTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTACC AGTACCCGTACCCCGGCCCCATGGACCCACGGGCAGCCAAGATGGGCGCTGATCCCCCGGGGCCCGTCCCCGCGGCCCA CGTCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACG GGTGGGTACCGAAAGTCACTGGGACAGCGCTTCTGCCCTCGGGGTTTTTCCGTCGGGAAAAGCCCCGACGGCTGAGAGT TGATCCTGACTGCTCGCGGCTCTGTCTGCCCAGGGGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGA AAACTGTCCCGCGTGAACAGGACTGCCTTCCCTTCCGCCCAGGCCGACAAAGCCGCCGAGGAAGGGGACATCAAATACC CGCAGGTAAGGGCGGAGGGGCCGGGCCGGGGGCCGCCGTCAGGGCTGCCACGCGCCTCCGACACGAGTGTCTGTGCCCA GCCCGC | Citation | Barnes GL, Hsu CW, Mariani BD, Tuan RS. Chicken Pax-1 gene: structure and expression during embryonic somite development. Differentiation. 1996 Oct;61(1):13-23. | Copyright | Copyright © 1996 International Society of Differentiation. Published by Elsevier Inc. | Comments | The complete cDNA template sequence was obtained from the information in the publication as described in Barnes et al. 1996. |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 7-12 | | stage 12 | | stage 12 | | stage 12 | | Sclerotome Somites
| 13-18 | | stage 15 | | stage 18 | | stage 18 | | Sclerotome Somites
| all | | |
Entry 12Entry 13GEISHA Id | Pax1.Draga.2019 | Data Source | Publication | Complete cDNA Template Probe | show CGGGCGGAGGGTGCCGAGTCCTCTCCAGGTCCCCCCGGCGGCCGCGGGGAGCGGCCGCCGCGGCCATTTAGGAGCGGAG CGGGAGCCAATGGGAGGCCGCCGGGCGCTTCCAGCGTGACGGCCGAGATTGACGTGTTTCCCACGTCAAATTGATCCCA AGTAGCGGCGGGGGCTCCCCGCGAGCGGGGAACCGGCGCGGCGCCGCCACGACAGCCCCGCGGCCGCCGCCCCCCGCAG CCCCGCCGCCGGCTCCCGCTCCGGCTCCCTCTATGCCGCGCCGGCGGCGGCTGCGGCGCTGCCCCACTGCCGGGCGATG GAGCACACGTACGGGGAGGTGAACCAGCTGGGTGGTGTCTTCGTGAACGGGCGTCCGCTGCCCAACGCCATCCGCCTGC GGATCGTGGAGCTGGCCCAGCTCGGCATTCGCCCGTGCGACATCAGCCGCCAGCTGCGGGTCTCGCACGGCTGCGTCAG CAAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCATCGGAGGCAGCAAGCCGCGGGTCACCACC CCCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATCTTCGCCTGGGAGATCCGCGACCGGCTGC TGGCCGACGGCGTCTGCGACAAGTACAACGTGCCGTCGGTCAGCTCCATCAGCAGGATCCTGCGGAACAAAATCGGCAG CCTCTCGCAGCCCGGCGGCCCTTACGACGGCGGCAAGCAGCCCCCCCCGCAGCCCGCCCTGCCCTACAACCCCCTTTAC CAGTACCCGTACCCCGGCCCCATGGCCCCGCCGGCAGCCAAGATGAGCGCTCATCCCGGGCCCGTCCCCGCGGCCCACG TCGGGCTGCCCCGCTCCTGGCCCTCGGCTCACTCTGTCACCAACATCCTGGGCATCCGCACCTTCGTGGAGCAGACGGG GGCTTTGGGTGGCACCGAGGGCTCTGCTTACCCCCCCAAAATGGAAGACTGGCCCGGCGTGAACAGGACTGCCTTCCCT TCCGCCCAGGCCGACAAAGCCGCCGTGGAAGGGGACATCAAATACCCGCAGCCCGCCCCGGGACTCTCCTCCGTGGGCA GCTTCCTCCCGGCCTGCGCCTATCCCCCCGGCAACCAGCACGGCGTCTACGGCGCGCCCGGCGGCTACATCCCCCCGGG GCACCCCTGGCAGCCGCAGGGCCACCACGGCCCCGGTGTGACGGTGCACGGAGGCGACCTGGCCGGCGCCATGGCCTTC AAGCAGCCCGGCAGGGAAGTCACGGACAGAAAACCCGGCAGCCCCGTGGGGAAGTCCCCGGATCCTCTCAGCCCCATCC ACGGACTCTCGATCCCAGCCTCCTCCTCCTAGAGCCGCGCACCGGGCACACTCGCTTGGAACACACACCTGCAAACCGT GACTGGATCCCGAAGTGCCACCCAACTGTCACCCGAGTGCCACTGCCTCCGAGGGACGAGGAGACCGGCGAGCGGCGAC GTCCTCCCACGGCCGTCCCTGCACCGGGGGACGCGGTGGGGACACTCCTGGGGACACGTTACCTCCATCGGATCGCGGA GGGGTTACGGAAGAGACTCAGCCTTCCCCCTTTATTGCGTCTTTCTGCTTTTTTTTACCCCCTCGCTTTCAGTTTTCCT CTCTCCGCACCGTCCCCCGTGGACCGCCGGCCGCATACCAGCCTCTGTCCCAGCCCCAGAATGGAACCAGCAGCCGGAG TGTAAATGGACAAATAAGCCACAACTTTTTTTGTGATATATTTTTATAATAACAAACCTTAATAAATAAATAATAATGA TAATAATAATAA | Citation | Margarethe Draga, Kathrin Heim, Renate Batke, Martin Wegele, Felicitas Pröls, Martin Scaal. Somite development in the avian tail. J Anat. 2019 Oct;235(4):716-724. Epub 2019 Jun 21. DOI: 10.1111/joa.13032. | Copyright | Copyright © 2019 Anatomical Society. | Comments | Authors indicated the probe was kindly provided by Bodo Christ. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, above sequence was obtained from NCBI (XM_015283428.2). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 19-24 | | stage 20 | | stage 20 | | stage 20 | | stage 20 | | stage 20 | | stage 21 | | stage 21 | | stage 21 | | stage 21 | | stage 21 | | stage 22 | | stage 22 | | stage 22 | | stage 22 | | stage 22 | | stage 23 | | stage 23 | | stage 23 | | stage 23 | | stage 23 | | stage 24 | | stage 24 | | stage 24 | | stage 24 | | stage 24 | | Sclerotome Unlabeled
| 25-27 | | stage 25 | | stage 25 | | stage 25 | | stage 25 | | stage 25 | | stage 26 | | stage 26 | | stage 26 | | stage 26 | | stage 26 | | stage 27 | | stage 27 | | stage 27 | | stage 27 | | stage 27 | | Sclerotome
| all | | |
MouseFrogFruit FlyZebra FinchZebrafish
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