Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

RASGEF1B
RasGEF domain family member 1B

Gene

Official Symbol	RASGEF1B
Official Full Name	RasGEF domain family member 1B
CGNC ID	63405
also known as	ras-GEF domain-containing family member 1B
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003641169
Polypeptide	XP_003641217
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	100859744
Ensembl Gene	ENSGALG00000010903
KEGG	gga:100859744

Entry 1

GEISHA Id	RASGEF1B.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCTTCCTTCTCAGTTCACGC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGTCTTTCGATCTCCGTAGCAGC	cDNA Template Length
Forward cDNA Template Probe	show TGGNATTATCCAAGGANCCTTTTGTACAAAAGCCTGGACAAATTCTTCTGGCCCGAATATAATTAAGTCTTTCGAGCTC TATGTGTGTCAGCTGCTGAGCTAATGTGTAGGGATCATTGCAGACAGTGATTATGTCCCTCTGGATGGACTGTGGCTTG GTCTTTAGGACTGTGAGGCGATCTGTGGACGTTGCATTGATTTTTGCAAGTACTTCCTCATACTGGCTAACAGTCGCGA GCTTTCGAAGCAGGTTCTGGAGGAGCTGCTGGACGTTCTTCCGATACATCTCATCACCACTGGTTATTCTTTGTGCCAA CTCCTTTAAGTTTCTCATCATTCTTTCATCTCGAAAATCATAAGGAAATGTCTCTGTCCATTCTGTCAAGAGCTGCAGG ATTTTGGGAGCTATTTTTCGTATTCGGTTCTTGTCCTGGACAGGTTCACTTAGTCTCTGTTGCTCAATGCACAGATGGC AAACTTTGGCCATAAGCTCATAGGGATGCATGAACAAGCGTGAACTGGAAAAGGAAGGA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Epiblast
Headfold
Neural Plate/Tube
Primitive Streak

Low level expression.

7-12

stage 8

stage 9

stage 10

Forebrain
Midbrain
Rhombomeres
Somites

Dorsal view.
Ventral view.

13-18

stage 13

stage 15

Forebrain
Hindbrain
Midbrain
Neural Plate/Tube
Somites

Dorsal view.
Ventral view.

19-24

stage 22

Forebrain
Foregut
Hindbrain
Mesonephros
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Rhombomeres

25-27

stage 27

Forebrain
Foregut
Hindbrain
Mesonephros
Midbrain
Neural Plate/Tube
Somites

Entry 2

GEISHA Id	PRKG2.Alev.2010	Data Source	Publication
Complete cDNA Template Probe	show CCTTCCTTCTCAGTTCACGCTTGTTCATGCATCCCTATGAGCTTATGGCCAAAGTTTGCCATCTGTGCATTGAGCAACA GAGACTAAGTGAGCCTGTCCAGGACAAGAACCGAATACGAAAAATAGCTCCCAAAATCCTGCAGCTCTTGACAGAATGG ACAGAGACATTTCCTTATGATTTTCGAGATGAAAGAATGATGAGAAACTTAAAGGAGTTGGCACAAAGAATAACCAGTG GTGATGAGATGTATCGGAAGAACGTCCAGCAGCTCCTCCAGAACCTGCTTCGAAAGCTCGCAACTGTTAGCCAGTATGA GGAAGTACTTGCAAAAATCAATGCAACGTCCACAGATCGCCTCACAGTCCTAAAGACCAAGCCACAGTCCATCCAGAGG GACATAATCACTGTCTGCAATGATCCCTACACATTAGCTCAGCAGCTGACACACATAGAGCTCGAAAGACTTAATTATA TCGGGCCAGAAGAATTTGTCCAGGCTTTTGTACAAAAGGATCCTTTGGATAATGACAAGAGCTGCTACGGAGATCGAAA G
Citation	Alev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
Copyright	Published by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
Comments	Primer Sequences from Publication: FORWARD PRIMER CCTTCCTTCTCAGTTCACGC; REVERSE PRIMER CTTTCGATCTCCGTAGCAGC Primers are 100% match to RASGEF1B