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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXI2
forkhead box I2

Gene

Official Symbol	FOXI2
Official Full Name	forkhead box I2
CGNC ID
also known as	forkhead box protein I2\|forkhead box protein I1-ema-like
gene type	unknown

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA
Polypeptide
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	101748691
Ensembl Gene
KEGG

Entry 1

GEISHA Id	Foxi2.Khatri.2013	Data Source	Publication
Complete cDNA Template Probe	show GGGAAAAGAGTCACTCTGTCACTGTAGGAAGAAAAGGAAAAGCCTTTGGAGAGCTTGAAAACGAAGACTTAAAGGTGGG CAGCTAAAAGGACAAACACTGTCGAGCAAATCTGTCGCAGACCAAGATGCTCACAGTGTGCTGTGCCTTCTGCAGTGGA ACAGTGACAGGACAGCCCATGTTTTACACTGAACTCCTATTTAGAACAGCTGCTCCCACTTCCTTTCAGCTGAAACGAG GGGAGTGGATTCCAATGTGTGTTGCTCCAGGAGAAATCACAGCCTGATGCTGTTGGTGCGAACTGCCCACCTCTCCATC AGCCTGGCCAGAAAATTAAGGAATGCTTTGTTTGAGTGAATCCCTGTGTTTCAGTCTCTCCACACGAGCCCCTGTCCAC AGCCTCCTTTGGACCCACATTTTATGAGAGAGGAGGATAAGGGATGCAGAAGCACAGCGTTTACAGGATGTCAGCCGCG TGGATTGGCATCGACCAAAGCAGAGTACAAATTCTACCCGAAGTTTAATACCAGCAGTACGAAGTGAAAGCAGTCCGTT CCCTCTCTCCCAGCAGGCGCGCCGGGCCGGCGGCGGACCCTCAGTCAGATCTACCAATACGTGGCCGAGAACTTCCCCT TCTACAAGAAGAGCAAGGCGGGCTGGCAGAACTCCATCCGACACAACCTCTCCCTCAACGACTGCTTCAGGAAGGTCCC GCGGGACGAGGATGACCCGGGTAAAGGCAACTACTGGACGCTGGACCCCAACTGCGAGAAAATGTTCGATAATGGCAAC TTCAGGAGGAAGAGGAAGAGGCGTCCGGAGGCCGGAGACAGCGGAGGGGCCGCGGGGGGCCCCTGTGTGAGCACAGCCC CCGGGCACGGAGAGATGCACTGAGGCGGAGGAAGGAATATTTTTCCCCCTATTAGATGCTGAAAGGAATCACCATGGGG TGAGCTGGGTGAGACGGTGGCTTTCCTTCCCCCTTGACAAGAGCAGCCTGTCCCAGCCTTGCCTGCTGACCTGCCCCAC GGATGCCCGAAGTGCCTTCCTCTCCTCTGTCCAGGTGTGCAGCTGGGATGCCCTCACTGCGATGCACAGCTCTCTGATG TGGTTGGGGTGGTGATGGGCTCACTGAGTGGGGAGGAACAGCAGGACGTGCCCCTGGAGCTGGGCATGGCGTGTGGGGC AGCCAGCCCCCCATCCTCTACGGTACTTCTGAATAAAACCCCTTTATTTTCCCTC
Citation	Khatri SB, Groves AK. Expression of the Foxi2 and Foxi3 transcription factors during development of chicken sensory placodes and pharyngeal arches. Gene Expr Patterns. 2013 Jan-Feb;13(1-2):38-42. DOI: 10.1016/j.gep.2012.10.001. Epub 2012 Oct 31.
Copyright	Copyright © 2012 Elsevier B.V. All rights reserved.
Comments	Authors indicated that cDNA probe for chicken Foxi2 was obtained from the UMIST Chick EST Repository (clone ID chEST912M14).

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

stage 11

stage 12

Ectoderm
Surface Ectoderm

Anterior and lateral to the otic placode region, 8 somites stage
Anterior to the otic placode region, 7 somites stage
Cranial ectoderm excluding otic placode region, 16 somites stage
Cranial ectoderm excluding otic region; 13 somites stage

13-16

stage 13

stage 16

Pharyngeal Arches and Clefts
Surface Ectoderm

Cranial ectoderm excluding the otic cup region, 21 somites stage
Pharyngeal arch region ectoderm

all

Entry 2

GEISHA Id	FOXI2.Freter.2012	Data Source	Publication
Complete cDNA Template Probe	show GCGGCTCGAGCGGGGGGGCACCTGCGGCTTTCTGTAAGCGCGCAGAGGAGTTCGCTCCGATTCGGGAGTATTCGGTATT AGGAGCGCACGTCGGACCACAGCGCGCCGGGCCGGCGGCGGACCCTCAGCCAGATCTACCAATACGTGGCCGAGAACTT CCCCTTCTACAAGAAGAGCAAGGCGGGCTGGCAGAACTCCATCCGACACAACCTCTCCCTCAACGACTGCTTCAGGAAG GTCCCGCGGGACGAGGATGACCCGGGTAAAGGCAACTACTGGACGCTGGACCCCAACTGCGAGAAAATGTTCGATAATG GCAACTTCAGGAGGAAGAGGAAGAGGCGTCCGGAGGCCGGAGACAGCGGAGGGGCCGCGGGGGGCCCCTGTGTGAGCAC AGCCCCCGGGCACGGAGAGATGCACTGAGGCGGAGGAAGGAATATTTTTCCCCCTATTAGATGCTGAAAGGAATCACCA TGGGGTGAGCTGGGTGAGACGGTGGCTTTCCCTCCCCCTTGACAAGAGCAGCCTGTCCCAGCCTTGCCTGCTGACCTCC TGCCCCACGGATGCCCGAAGTGCCTTCCTCTCCTCTGTCCAGGTGTGCAGCTGGGATGCCCTCACTGCGATGCACAGCT CTCTGATGTGGTAGGGGTGGTGATGGGGTCACTGAGTGGGGAGGAACAGCAGGGACGTGCCCCTGGAAGCTGGGGCATG GCGTGTGGGGGCAGCCAGACCCCCAATCTCTACGGTAACTTCTGAATTAAAACCCCTTTATTGCCCCA
Citation	Freter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Freter et al. 2012.