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COCH
cochlin
The human orthologue of this gene is associated
with the following human disease:
Deafness, autosomal dominant 9
Gene Summary
Expression
Other Species Expression
JBrowse
Gene
Official Symbol
COCH
Official Full Name
cochlin
CGNC ID
49473
also known as
cochlin|Coch-5B2|coagulation factor C homolog, cochlin (Limulus polyphemus)
gene type
protein-coding
Genomic Map
Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNA
NM_204937
Polypeptide
NP_990268
Gene Expression
In Situ Hybridization
GEISHA
Orthology
Entrez Gene
Ensembl Gene
Genetic Phenotypes
MOD
Fruit Fly
Human
1690
ENSG00000100473
MIM:603196
MIM:603196
Mouse
12810
ENSMUSG00000020953
All phenotypic alleles (
5
):Targeted, knock-out(
1
) Targeted, other(
4
)
MGI:1278313
Xenopus
100497833
982365
Zebrafish
368851
ENSDARG00000024032
ZDB-GENE-030616-403
ZFIN:ZDB-GENE-030616-403
Gene Ontology
Molecular Function
Biological Process
regulation of cell shape
,
sensory perception of sound
Cellular Component
extracellular region
Links to other databases
Entrez Gene
395779
Ensembl Gene
ENSGALG00000009920
KEGG
gga:395779
GEISHA Id
COCH5B2.Heller.1998
Data Source
Publication
Complete cDNA Template Probe
show
GTCGGCTGGGTGCGCCGCGCCTCCATTCGCGCCCGGGAGCGTGTCCCGCCGCCATGCAGTTCGCCCCCCTTCTCCTCGG
CGTCTTTCTGCTCTGCGGCTCCGCGCGTGGGAGCGACAGCTCAGCTTCCAATGCTATCACATGCTTTACAAGAGGACTT
GACCTTAGAAAGGAGACAGAAGATGTCCTTTGCCCAGCAAACTGTCCTCTATGGCAATTCTATGTCTTTGGGGATGGAA
TTTATGCCTCTCTTTCCAGTGTCTGTGGAGCTGCCATACACAGAGGGGTGATCACCAACGCAGGAGGAGCTGTAAGAGT
ACAGACTCTCCCAGGACAGGAAAACTACCCGGCTGTACATGCCAATGGGATCCAGTCTCAGGTGCTCTCTAGATGGGCT
TCATCTTTCTCAGTGACTCCAGGTACCAACAACCTAGCGCTTGAAGCAGTGGGACGATCAGTTGCAACAGCACGACCTG
CTACAGGCAAAAGACCTAAGAAGACCCTCGAGAAAAAGGCTGGAAACAAAGACTGTAAAGCTGATATTGCATTTCTCAT
TGATGGAAGTTACAACATCGGCCAACGTAGATTTAATCTGCAGAAAAACTTTGTTGGAAAAGTAGCGGTAATGTTGGGA
ATTGGAACGGAAGGGCCTCATGTTGGAGTTGTACAAGCCAGTGAACATCCAAAAATTGAATTCTACCTGAAAAACTTCA
CTGCTGCAAAAGAGGTTTTGTTTGCCATAAAAGAATTAGGGTTCAGAGGAGGCAATTCCAACACAGGGAAAGCTCTGAA
ACACGCAGCTCAGAAATTCTTCTCTATGGAAAATGGAGCACGCAAAGGAATACCCAAAATCATTGTAGTGTTTCTAGAT
GGCTGGCCCTCAGATGATTTAGAAGAAGCTGGTATAGTGGCCAGAGAATTTGGAGTCAATGTGTTCATTGTATCTGTAG
CAAAACCCACAACAGAGGAACTGGGAATGGTACAGGACATTGGTTTTATTGACAAAGCTGTCTGTCGCAACAATGGCTT
CTTCTCTTACCAAATGCCCAGCTGGTTTGGCACCACCAAATATGTAAAACCTCTTGTCCAGAAATTGTGTTCACATGAG
CAAATGTTGTGTAGCAAGACATGCTATAACTCTGTCAACATAGGCTTCTTGATAGACGGTTCCAGCAGTGTTGGAGAGA
GCAACTTCCGACTCATGCTTGAATTCATCAGCAATGTTGCAAAGGCTTTTGAGATCTCTGATATTGGTTCCAAGATTGC
AACTGTGCAGTTCACATACGATCAGCGTACTGAGTTCAGCTTCACAGACTACACCACAAAGGAAAAGGTCCTCTCTGCT
ATCCGGAACATTCGTTACATGAGCGGCGGCACTGCTACTGGTGATGCCATTTCTTTCACAACCAGAAACGTATTTGGGC
CGGTAAAGGACGGAGCAAACAAAAATTTCCTTGTAATTCTGACTGACGGTCAGTCTTACGACGATGTTAGAGGACCTGC
TGTTGCTGCACAAAAAGCAGGAATAACGGTCTTCTCTGTTGGTGTTGCCTGGGCACCTCTGGATGATCTGAAAGACATG
GCCTCTGAACCAAGGGAATCTCATACCTTCTTCACTAGGGAGTTCACTGGATTGGAGCAGATGGTTCCTGATGTTATTC
GAGGCATCTGTAAAGATTTTTTGGACTCTAAGCAATAACAGAAATCTGCTGTTGGATAGTTTCTGAAACTAAAAATTAT
GAGACTGGAACGGTCCCTCTTAAATACACAAGTTTTATTATGTATACTATCATCCTGTAAGGGAAGGAGAAGGCTACTT
TCTGTA
Citation
Heller S, Sheane CA, Javed Z, Hudspeth AJ. Molecular markers for cell types of the inner ear and candidate genes for hearing disorders. Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11400-5.
Copyright
Copyright © 2012 National Academy of Sciences. All rights reserved.
Comments
As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204937.1)
Stage
Image (click image to view full size)
Location (click to highlight)
Comments (click to highlight)
31-43
stage 43
stage 43
stage 43
stage 43
Ear/Otic Placode
Mouse
Emage
MGI:1278313
MGI GXD
MGI:1278313
Frog
Xenbase
982365
Fruit Fly
BDGP
Zebra Finch
ZEBrA
Zebrafish
ZFIN
ZDB-GENE-030616-403
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