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COL4A1
collagen type IV alpha 1 chain
The human orthologue of this gene is associated
with the following human diseases:
Angiopathy, hereditary, with nephropathy, aneurysms, and muscle
Brain small vessel disease with Axenfeld-Rieger anomaly
Brain small vessel disease with hemorrhage
Porencephaly 1
Gene Summary
Expression
Other Species Expression
JBrowse
Gene
Official Symbol
COL4A1
Official Full Name
collagen type IV alpha 1 chain
CGNC ID
12637
also known as
collagen alpha-1(IV) chain|collagen IV a1 chain|collagen, type IV, alpha 1
gene type
protein-coding
Genomic Map
Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNA
NM_001162399
Polypeptide
NP_001155871
Gene Expression
In Situ Hybridization
GEISHA
Orthology
Entrez Gene
Ensembl Gene
Genetic Phenotypes
MOD
Fruit Fly
Human
1282
ENSG00000187498
MIM:611773
MIM:120130
Mouse
12826
ENSMUSG00000031502
All phenotypic alleles (
15
):Chemically induced(
11
) Radiation induced(
2
) Targeted, knock-out(
1
) Targeted, other(
1
)
MGI:88454
Xenopus
100124870
,
373764
6451484
Zebrafish
554269
ENSDARG00000055009
ZDB-GENE-081105-114
ZFIN:ZDB-GENE-081105-114
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene
395530
Ensembl Gene
ENSGALG00000016841
KEGG
gga:395530
GEISHA Id
COLIVA1.Halfter.2008
Data Source
Publication
Complete cDNA Template Probe
show
GCGCCGCGGCCGGCACGGAGGGGAGAGGCGTGCATGTGGGACCGGCCCCGAGGAGCCCCCACGCCGCGCTGAGCCGCCG
GCGCCCCGCCGCCCAGGGACCGACGGAGCAGCGCGGTGCGCGGTAACATGTGGCGTTGGCTGGGCTTCGGGCTGCTGCT
GAGCGCCGAGCTCAGCGCCGTGTCCGCCGCGGGTTGTTCTGGTTGTGGAAAATGTGACTGCAGTGGAGTAAAAGGACAA
AAGGGAGAAAGAGGCCTTCCGGGACTACAGGGTGTGATTGGGTTTCCTGGAATGCAAGGACCTGAAGGTCCCCCTGGGC
CACCAGGACTTAAGGGTGATACTGGAGAACCAGGGCTGCCAGGAACAAAAGGAACAAGAGGCCCACCAGGACCATCAGG
ATTTCCAGGAAACCCAGGCCTCCCTGGCATTCCTGGACAAGATGGCCCTCCTGGTCCACCTGGCATTCCAGGATGTAAT
GGCACAAAGGGTGAAAGAGGTCCAGTAGGTCCCCCAGGTTTACCGGGACTGACTGGAAGCATAGGACCCCCAGGACCTC
CTGGAATTAAGGGAGATCCAGGTGAAGTGATTGGTATTTTACCTCCTAGTGTGCTAAAAGGTGATAAAGGCTTTCCTGG
CCAACCTGGACTACCTGGTCCACCTGGAACTCCAGGGTTTCAGGGACCAATGGGGCCACCAGGGATTCCAGGAGAACCA
GGTCCCCCCGGGCCACCAGGACCCCCAGGCGAGAAGGGCTACATGGGCTTGGGCTTTCAAGGTCCCAAAGGTGAAAAGG
GAGAACAAGGGGTCCAGGGTCCCCCGGGGCCACCAGGACCAGCACCACACATGAAAGAAAAAGGAAGCGAAATCATAAA
GGGAGAAAAGGGTGAGCCAGGTGAAAAGGGTGAACAGGGAGTCCCAGGATTGCCAGGCTCAGGTTACAGAGGAGAAAAG
GGTGAACCTGGGAAGCCCGGTCCACGTGGAAAGCCTGGAAAAGATGGTGAACCAGGACCAAAAGGAGAACCCGGCTTGC
CTGGAGGGTTTGGGATTCCAGGAAGGCCTGGGGAACCTGGTGCTAAGGGTGAAAAAGGTGATCAAGGTCCTCAAGGGCC
TCCAGGAAGAATTATAGATGCTGGACCAATAGATACTTTTGGTGAAAAAGGAGACCCTGGAGTTTCAGGTTTGCCTGGA
CTAAAAGGTCAAAAAGGTGAAAAAGGTTTCCCTGGTGCACAAGGGATCCCAGGAATTCCAGGTCGACCAGTTCCAGACA
TGGTAGGATCACCTGGTGTCCCTGGCCAGAGAGGTGAAAAAGGTGAAAAGGGTTCTCCAGGATTCCCTATACCTGGACC
TCCTGGAAGAGATGGTTTCCCAGGCCCACCCGGGTTGCCCGGCCCACCAGGTCCTCCAGGTGTAACAGATGGAATAGAT
CAATGTCAGCAAGGGCAACCTGGTGCACCAGGTGTACCTGGACCTCCAGGGCAACATGGATTTCCAGGAGAGATGGGAG
AGAAAGGTGAAAAAGGTGAAACCTGTGCCTTGTGTGATAAAGTAGGACCCCCTGGACTTCCAGGACCACAAGGACTACC
GGGTCCAGCAGGTTTTCCGGGACAGTCAGGTTTCAAGGGTGACAGAGGCTTACCTGGACTTGATGGCCTTCCAGGCGTA
CCCGGGCCCCCAGGCGCTCCAGGACTCATTGGCCTCCCTGGGGCAAAAGGAGAACCAGGAGACTTTACTTATGATTCCA
TCCTGAAAGGTGAGAAGGGAGATCCTGGTTTCCCAGGACAACCAGGTATTCCTGGAAGAGAAGGAACACCAGGAAAAGA
CGGATTGCCAGGTCCTCAAGGTCCAAAAGGAGCATCGGGTACAGCTGGCTTGAAAGGAGAACGTGGTCCCCCTGGACAA
CCTGGATTCCCTGGAGTACGTGGTGAAAGAGGTTTACCTGGCTCTCCTGGGGTAGGCACTGCAGGGTTACCTGGTGACA
AAGGAGAGAGAGGTTTTGCTGGAACTCCAGGTTTACCAGGTCTTCCAGGAACAAAAGGTGAAGCAGGACGAACTGTACC
ACTCCCTGGACCTCCTGGGGCAGATGGCCTTCCTGGACCACCTGGTTTCCCTGGACCCCAAGGTGACAAAGGGAATCCT
GGGCTTCCGGGGAGACCTGGCCTGCCAGGAGAAAAAGGTGCTGTTGGGCAGCCAGGTATAGGGTTTCCTGGACCTCCAG
GACCCAAAGGTTTCCCAGGTCAGCCTGGCTCACCTGGTCCTCCGGGTACTCCTGGAACCCCTGGCCTGGATGGTTTTCC
AGGCACACCAGGTTTACAAGGTCAAAAAGGTGAACCTGGAGTGGGTCTCCCTGGTCCTAAAGGGTTACCAGGCATCCCA
GGTCCAGCTGGCATCCCTGGAGAAAAAGGAAATCCAGGGCTGCCTGGCTTACGAGGTGAACAAGGATTCCCAGGTGTAC
CTGGACAACAAGGATTTAGAGGAGATCCAGGCCTCCCTGGACTACAGGGCTTGCCAGGCCCCCAGGGCTCACCAGGAGT
GGGCCCACCGGGATTGCCAGGGCCCGCTGGGCAGCCAGGACCTGAGGGGCCACCAGGATTTCCTGGAATAAAAGGAGAA
AGGGGCTTCCCTGGTATCCCAGGTCTAGATATGCCAGGGCCAAAAGGAGATAAAGGTAGCCAGGGCCAGCCTGGAGTAC
CAGGGTCTGTGGGGCTACCTGGCCTGCCAGGTCCACAAGGATCTGTTGGACTGAAAGGATCAGCAGGAGCCAAAGGAGA
AATGGGAGTTATGGGAACTCCAGGGTTGCCAGGGACTCCTGGACCAGTTGGAGATCGAGGGTTGCCTGGTGAAAAAGGT
AGCCAAGGTTTGAAAGGTGTGGTTGGACCACAGGGTGAACCAGGTGTCAAAGGGGATAAAGGTGAAGCTGGTCTTCCGG
GAATACCTGGAAGCATGGACACCATGGACATGGTTAGTCTCAAAGGCCAAAAGGGAGATCCTGGAGAAAAAGGGGACCT
TGGTCCAACAGGAGAAAAAGGGTTACGTGGGGAGTATGGAGAACCAGGAATTCCAGGAAGGGATGGTGAACCTGGTACT
CCGGGACAACCAGGACCAAAAGGAGATCAAGGCCCCCCAGGGTACCCAGGAGATCCAGGAATTCCAGGGCAGAAAGGAT
CAGTTGGTGAAATGGGTTTGCCAGGAACACCTGGAGAAAAGGGTCTGCCTGGAATACCAGGTTCACCAGGCACACCAGG
GTTCCCTGGGCAAAAAGGTGAAAAAGGAGACAAAGGAGCAGCAGGTTTTCCTGGAATTGGCTTTCCAGGATCTCCTGGT
GAGAAGGGAGAACCAGGAAGAACAGGCAGTCCGGGTTTGTCTGGAGACAAAGGTGAAAAGGGTAATGCAGGAATTCCAG
GAATGCCGGGTGCTCCAGGTCCCAAAGGATCCCCTGGCATTGCAGGATTTCCAGGCAACCCAGGCCTCCATGGAGCAAA
GGGTGAAAAAGGACTTCCTGGCTTAAGTGGCATCCCAGGCTTAAAAGGAGAACCAGGTGAACCTGGTGTTCCTGGTCCT
GCTGGTTCCATTGGTCAGAAGGGTGAACCAGGCTATGATGGGATTCCAGGCACAGCTGGTGCAAAGGGTGAACAAGGTG
TACCAGGTAGAGGAGTTCCAGGATATCCAGGTGCAAAGGGAGATAAAGGTGCAAAGGGTGAAGTGGGTTTCCCAGGATC
CCCAGGAATTCCAGGGATTCCAGGCTTAAAAGGAGAACAAGGGTATGCTGGCCCACCCGGCCCTAAAGGCAACCAAGGT
CTTCCTGGACTACCAGGAAGTGCAATTGAGGGCCCTAAAGGAGACAGAGGACCACAAGGCCAACCCGGCCTTCCAGGTT
TACCAGGTCCAACGGGGCCACCAGGACCTCCAGGTCTGAAGGGAGCTAAAGGAGAGCAGGGAAGCGATGGCTGGCCTGG
AACTCCTGGAGGTCCAGGAGATAAAGGCGATCCAGGTTTCCAGGGACTGCCAGGTAGTCCTGGTTTGCCAGGAGGTGCT
GGTGAAAAGGGTGATCTAGGGCCTCCAGGTGTTCCAGGTGTTCCAGGTCCAAAAGGATCTGCAGGCTTCCCAGGCCTCA
AGGGTGAGCGAGGTGACCAAGGTCTTCCTGGATCTAAAGGTTTACAAGGCCCGCCGGGCCCCCCAGGTGCTTTTCAGCT
TATCAAAGGAGATCCTGGCTTACCTGGCCCGGTAGGACCAGTTGGTCTCAAAGGATTCCCAGGACATCCAGGTCCCAAA
GGACAGCAAGGAGTAACAGGGCCTTCAGGTGTACCTGGACCACCTGGTAGTCCAGGGTTTGATGGCAGACCAGGGCAAA
AAGGAGAAGTTGGTCCTTATGGTCCTCCAGGGCCCAGAGGAATCCCTGGTCCGCCTGGCCCTGAAGGTTTGCCTGGGGC
TATGGGTCCACCAGGTGCAGCATCTGTTGCTCATGGCTTCCTTGTCACCAGACACAGTCAAACCACTGAAGAACCACAA
TGTCCATTTGGAACAAGGCTGATTTACCATGGCTACTCCCTTCTTTATGTACAAGGAAATGAAAGAGCACACGGTCAAG
ATCTGGGCACTGCAGGGAGCTGTCTTCGTAAATTTAGTACTATGCCTTTCTTATTTTGCAATATCAACAATGTATGTAA
CTTTGCATCAAGGAATGACTATTCCTACTGGCTGTCCACTCCTGAACCCATGCCAATGAGTATGGCACCTATCACTGGT
GAAAGTATCAGACCATTCATCAGCAGATGCTCTGTGTGTGAAGCTCCTGCTATGGTAATCGCCGTTCACAGTCAAACAA
TCCAGATACCACCATGTCCTGAAGGCTGGAGTTCCCTTTGGATTGGTTACTCCTTTGTCATGCACACCAGTGCTGGTGC
TGAGGGCTCTGGCCAGGCCCTGGCGTCTCCTGGTTCCTGCCTGGAGGAGTTCCGCAGCGCTCCCTTCATTGAATGCCAT
GGCCGGGGCACCTGCAATTATTATGCAAATGCTTACAGCTTCTGGCTTGCCACTATAGAGAGGAATGAGATGTTCAAGA
AACCGACTCCGTCAACTTTGAAAGCAGGGGATCTGCGCTCCAACGTTAGCCGTTGTCAAGTCTGTATGAGAAATACATA
ATGACTTTTGAATTTCAACTTATTTCACACAATATGGTGCTATTTGTTTAACAGCAATGAAGCCTAGACATATATCATA
TGTACCTCATTGTTGTCCAATATGAAAACAGTAAAGTGCCTTTTAGGAACTTGCATAACTAACACACACTGCTTTACTG
GCCCTGTCCTTGCTGAAGAAGAAAAGAGACAACAAAGATAAGCTTCAAATGTTGACATGCCAAATGGCACTTTTGATCA
AAAAATATATATTTTTTATATAAATGCAATGCACTGATAGAATAAAGAGTCAGCATTCGTCCAGAAAAATGCAAAGGTG
CTAGGAGGTATGCAGTTCTGCCTTATACTGTTGGACTCCCCTTTCTCATTCTTGTATTATATATTTAGATTCATTTTTC
TTCCCCAGATGAGTTTGTTGTTATCATTATTTAGGTGTCTCAAAATCCCAGACTCTTGTGTATGTACTTATTGTTCCTT
ATTGTACAAAGCAATACTAATGTAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTCTGGGATTACAGACTGTGGTTAAGCA
ACAAGTAACCATCTTTTCAAAGCATAGATTGCCATCCCGCAAACCTTTGCTTCTGTTGTAGTCCTTAGCGCTATTGGTT
GTAATGGGACTACACCTGGAAGAGACTTCTGAATCGGTCTCCCAATAGGCAAGTAAGTGTTTCTGCTATGTTGGTACTA
TGCAGCTTCTTCATGCAGTAGAACAAACTTTCCTGTGGAATAAAGAATGATCCAGCAATGGTCAAGAAAAAAAATATAT
AAATGTGTTAGTAATTTATATAGAGATCAACCATTAGTCTTTGAGTTTATCATTTCAGAAAGAAGCTTACAGAAGTTTT
CTTCTTTGCAGTGTCATAAATTCGGTGTTAAATACCATAATATGATGTGAAATGTTCATTTTATATAGGTCATTTCAAT
TCCAAATTTGCAGAGACTGAACCCAGGTTAATAGCTATTTGTGTTTATTATAGTAAATCCCGCTTTGAGCTTGTAGTCT
TTATTCTGTATTTAATATTTTTCAGGGTTTTAAACACTACTCACACACTGAATGACTTGATTTTGAGAAGTATAAGGCC
TTCATTTTGTTAATACCGTGCCAAAAAATTCTTTACAGTGGCCTCATTAATATTTCTAAAGAATTTCTATGCAATGACA
CCAATGTTTGAGCACATCTGCATCCAGAAGTGTTTTACAGACTATCATCATGCAAATACCAAAAGTTTTTTTTTTTTTT
ACAAATGCCGAGGCCTTTGTGTAATTTCTTAAGTGTGTATTATTTCTTACAAAGTCAAGTTTGTAATAAAACTATTTGT
GTAAAAA
Citation
Halfter W, Dong S, Dong A, Eller AW, Nischt R. Origin and turnover of ECM proteins from the inner limiting membrane and vitreous body. Eye (Lond). 2008 Oct;22(10):1207-13. doi: 10.1038/eye.2008.19. Epub 2008 Mar 14.
Copyright
© 2013 The Royal College of Ophthalmologists
Comments
As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001162399.1
Stage
Image (click image to view full size)
Location (click to highlight)
Comments (click to highlight)
25-29
stage 29
stage 29
Eye
Lens
Mouse
Emage
MGI:88454
MGI GXD
MGI:88454
Frog
Xenbase
6451484
Fruit Fly
BDGP
Zebra Finch
ZEBrA
Zebrafish
ZFIN
ZDB-GENE-081105-114
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